Wall clock time and date at job start Fri Apr 10 2020 18:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 119.99964 * 2 1 4 4 H 1.07999 * 119.99777 * 203.48560 * 3 2 1 5 5 C 1.38816 * 120.00103 * 23.49128 * 3 2 1 6 6 N 1.31613 * 119.99720 * 15.10178 * 5 3 2 7 7 Si 1.86793 * 119.99866 * 195.10477 * 5 3 2 8 8 H 1.48499 * 109.47566 * 0.02562 * 7 5 3 9 9 H 1.48509 * 109.47025 * 119.99697 * 7 5 3 10 10 H 1.48496 * 109.47386 * 239.99495 * 7 5 3 11 11 C 1.46500 * 119.99916 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64084 * 178.31753 * 11 2 1 13 13 C 1.55162 * 110.71796 * 301.45299 * 11 2 1 14 14 C 1.54906 * 101.58216 * 154.04719 * 13 11 2 15 15 N 1.47429 * 104.82963 * 322.98977 * 14 13 11 16 16 C 1.34778 * 125.64774 * 204.09643 * 15 14 13 17 17 O 1.21283 * 120.00184 * 180.02562 * 16 15 14 18 18 C 1.50698 * 119.99838 * 359.74741 * 16 15 14 19 19 N 1.46507 * 109.47163 * 180.27937 * 18 16 15 20 20 C 1.34770 * 120.00037 * 180.02562 * 19 18 16 21 21 O 1.21279 * 120.00417 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00040 * 179.97438 * 20 19 18 23 23 C 1.54268 * 110.03452 * 297.16599 * 22 20 19 24 24 C 1.54888 * 104.19814 * 217.10218 * 23 22 20 25 25 C 1.54892 * 102.74781 * 37.94103 * 24 23 22 26 26 C 1.53869 * 110.03651 * 179.97438 * 22 20 19 27 27 C 1.47016 * 108.70443 * 24.35725 * 15 14 13 28 28 H 1.08996 * 109.46882 * 275.21171 * 1 2 3 29 29 H 1.09002 * 109.47088 * 35.20946 * 1 2 3 30 30 H 1.09007 * 109.47143 * 155.20916 * 1 2 3 31 31 H 0.97004 * 119.99799 * 180.02562 * 6 5 3 32 32 H 1.08999 * 111.00653 * 35.97030 * 13 11 2 33 33 H 1.09000 * 111.03800 * 272.13227 * 13 11 2 34 34 H 1.09000 * 110.37080 * 204.15475 * 14 13 11 35 35 H 1.09001 * 110.46258 * 81.87303 * 14 13 11 36 36 H 1.09001 * 109.47012 * 300.27226 * 18 16 15 37 37 H 1.08993 * 109.47836 * 60.27809 * 18 16 15 38 38 H 0.96996 * 119.99580 * 359.97438 * 19 18 16 39 39 H 1.09003 * 110.01674 * 58.60766 * 22 20 19 40 40 H 1.09004 * 110.48194 * 335.78524 * 23 22 20 41 41 H 1.09001 * 110.48379 * 98.42125 * 23 22 20 42 42 H 1.08992 * 110.75663 * 279.62877 * 24 23 22 43 43 H 1.08991 * 110.75670 * 156.25158 * 24 23 22 44 44 H 1.09001 * 110.48772 * 203.38140 * 25 24 23 45 45 H 1.09002 * 110.48680 * 80.73471 * 25 24 23 46 46 H 1.08999 * 110.03975 * 238.57323 * 26 22 20 47 47 H 1.09003 * 110.03109 * 359.97438 * 26 22 20 48 48 H 1.08999 * 109.88377 * 118.12971 * 27 15 14 49 49 H 1.09006 * 109.88617 * 239.29701 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1626 1.2246 -0.3727 5 6 1.5419 2.3383 0.4792 6 7 0.4428 2.2523 1.1980 7 14 2.2840 4.0108 0.1037 8 1 3.5092 3.8359 -0.7169 9 1 1.2997 4.8320 -0.6463 10 1 2.6325 4.6945 1.3750 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 -0.0304 13 6 1.8161 -2.1233 1.2371 14 6 2.1053 -3.5569 0.7263 15 7 1.6993 -3.5415 -0.6909 16 6 1.3359 -4.6182 -1.4156 17 8 1.0200 -4.4875 -2.5793 18 6 1.3281 -5.9854 -0.7817 19 7 0.9060 -6.9800 -1.7711 20 6 0.8238 -8.2803 -1.4267 21 8 1.0997 -8.6273 -0.2978 22 6 0.3891 -9.3034 -2.4443 23 6 -1.0553 -9.0132 -2.9017 24 6 -1.6863 -10.4164 -3.0804 25 6 -1.0758 -11.2181 -1.9041 26 6 0.3766 -10.7053 -1.8102 27 6 1.7626 -2.1581 -1.1845 28 1 -0.3633 0.0933 1.0234 29 1 -0.3633 0.8397 -0.5925 30 1 -0.3634 -0.9330 -0.4309 31 1 0.0178 3.0576 1.5326 32 1 0.7618 -2.0023 1.4856 33 1 2.4473 -1.8783 2.0913 34 1 1.5139 -4.2843 1.2824 35 1 3.1674 -3.7857 0.8142 36 1 2.3302 -6.2275 -0.4279 37 1 0.6344 -5.9922 0.0590 38 1 0.6850 -6.7025 -2.6739 39 1 1.0631 -9.2874 -3.3008 40 1 -1.5908 -8.4484 -2.1385 41 1 -1.0544 -8.4720 -3.8478 42 1 -1.3957 -10.8517 -4.0364 43 1 -2.7715 -10.3661 -2.9915 44 1 -1.0898 -12.2859 -2.1222 45 1 -1.6147 -11.0094 -0.9799 46 1 1.0436 -11.3697 -2.3596 47 1 0.6855 -10.6458 -0.7665 48 1 2.4909 -2.0856 -1.9922 49 1 0.7803 -1.8457 -1.5392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190317492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:09 Heat of formation + Delta-G solvation = -55.406691 kcal Electronic energy + Delta-G solvation = -27479.600689 eV Core-core repulsion = 23634.803576 eV Total energy + Delta-G solvation = -3844.797113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.59146 -39.75154 -37.75474 -37.22799 -34.89796 -34.61909 -31.80699 -30.29869 -29.83023 -29.00621 -28.51255 -26.88450 -26.07786 -23.60432 -22.38871 -22.03969 -21.01463 -20.09942 -19.41067 -19.13913 -17.87262 -17.13968 -16.64709 -16.45759 -16.26219 -15.67686 -15.41317 -15.30483 -14.75228 -14.24626 -14.18731 -13.73911 -13.59555 -13.42592 -13.38393 -13.02972 -12.55153 -12.40834 -12.38788 -12.02314 -11.80361 -11.67523 -11.45086 -11.44794 -11.42937 -11.12046 -11.05044 -10.83874 -10.83344 -10.64849 -10.53890 -10.28409 -10.02239 -9.99162 -9.93632 -9.84132 -9.37550 -8.64115 -8.49109 -6.86818 -5.81902 -3.29358 2.39669 2.56657 2.65096 3.27626 3.33292 3.41434 3.43139 4.12656 4.24371 4.35735 4.42019 4.43134 4.83640 4.94870 5.01199 5.09457 5.10665 5.13336 5.19427 5.23740 5.27373 5.29654 5.32831 5.47981 5.49759 5.50565 5.59657 5.67585 5.75550 5.81018 5.82978 5.92762 5.95842 6.00976 6.14299 6.20060 6.31379 6.44574 6.55761 6.72799 6.80627 7.26279 7.27734 7.56647 7.64619 7.73353 7.97721 8.09328 8.29907 9.12714 9.75446 10.24245 11.22827 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.035086 B = 0.002058 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.856963 B =13600.448263 C =13795.345116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.150 4.150 14 C 0.094 3.906 15 N -0.605 5.605 16 C 0.519 3.481 17 O -0.547 6.547 18 C 0.104 3.896 19 N -0.717 5.717 20 C 0.521 3.479 21 O -0.541 6.541 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.119 4.119 27 C 0.086 3.914 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.003 0.997 31 H 0.253 0.747 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.412 0.588 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 -23.645 -5.454 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.191 4.191 14 C -0.029 4.029 15 N -0.339 5.339 16 C 0.306 3.694 17 O -0.426 6.426 18 C -0.023 4.023 19 N -0.371 5.371 20 C 0.307 3.693 21 O -0.419 6.419 22 C -0.133 4.133 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.157 4.157 27 C -0.038 4.038 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.250 0.750 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.109 0.891 48 H 0.081 0.919 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.929 -23.668 -5.230 24.257 hybrid contribution 0.246 1.235 -0.448 1.337 sum -0.683 -22.433 -5.678 23.151 Atomic orbital electron populations 1.20810 0.82536 0.95668 0.99707 1.43866 1.01820 0.99887 1.84969 1.19239 0.98885 0.85261 1.35757 0.91164 1.25031 0.98068 0.98652 0.97643 1.70081 1.21018 1.27388 1.36121 0.86178 0.78513 0.84147 0.77627 1.20220 1.21551 1.21690 1.21304 0.96447 0.86008 0.90041 0.90230 1.23395 1.03050 0.92238 1.00405 1.22489 0.99794 0.99843 0.80768 1.48435 1.65066 1.07729 1.12620 1.20053 0.77592 0.85424 0.86295 1.90682 1.49558 1.85718 1.16611 1.21039 1.02862 0.86026 0.92405 1.45752 1.69235 1.06332 1.15823 1.20620 0.76668 0.82676 0.89289 1.90673 1.49527 1.80074 1.21586 1.21946 0.98892 0.94738 0.97747 1.22383 0.93230 0.98128 1.01734 1.22503 1.00047 0.94817 0.98774 1.22381 0.95676 0.99523 0.98645 1.22183 0.97255 0.93126 1.03137 1.22811 1.02532 0.79296 0.99123 0.94714 0.94102 0.97854 0.93672 0.90522 0.90119 0.91029 0.91152 0.88473 0.88481 0.74987 0.88226 0.91012 0.90608 0.91194 0.91249 0.91498 0.91477 0.91406 0.89141 0.91870 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.72 7.70 59.85 0.46 4.18 16 2 N -0.59 -13.85 2.93 -171.37 -0.50 -14.35 16 3 C -0.26 -6.88 9.59 -15.06 -0.14 -7.03 16 4 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 5 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 6 N -0.90 -25.49 10.86 55.49 0.60 -24.89 16 7 Si 0.91 21.26 29.58 -169.99 -5.03 16.23 16 8 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.17 3.25 3.42 -66.09 -0.23 3.02 16 12 H 0.08 1.48 7.93 -51.93 -0.41 1.06 16 13 C -0.15 -2.39 6.65 -24.58 -0.16 -2.56 16 14 C 0.09 1.18 6.69 -2.53 -0.02 1.16 16 15 N -0.61 -8.96 3.33 -170.51 -0.57 -9.53 16 16 C 0.52 7.52 7.92 -10.99 -0.09 7.43 16 17 O -0.55 -9.47 15.99 5.55 0.09 -9.38 16 18 C 0.10 1.21 5.16 -5.19 -0.03 1.18 16 19 N -0.72 -7.89 5.47 -61.47 -0.34 -8.22 16 20 C 0.52 5.83 6.99 -10.99 -0.08 5.75 16 21 O -0.54 -7.74 15.21 5.56 0.08 -7.66 16 22 C -0.11 -0.92 3.30 -90.66 -0.30 -1.21 16 23 C -0.12 -0.84 6.31 -25.07 -0.16 -1.00 16 24 C -0.12 -0.77 6.91 -24.74 -0.17 -0.94 16 25 C -0.12 -0.86 6.83 -25.04 -0.17 -1.03 16 26 C -0.12 -0.96 6.40 -25.59 -0.16 -1.12 16 27 C 0.09 1.51 6.41 -3.06 -0.02 1.49 16 28 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 29 H 0.04 1.05 7.43 -51.93 -0.39 0.66 16 30 H 0.00 0.06 6.30 -51.93 -0.33 -0.26 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.08 1.34 7.28 -51.93 -0.38 0.97 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.10 1.08 7.85 -51.93 -0.41 0.67 16 38 H 0.41 4.36 7.44 -40.82 -0.30 4.05 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.93 6.39 -51.93 -0.33 0.59 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.46 6.15 -51.93 -0.32 1.15 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -31.34 385.19 -9.45 -40.78 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.24 Total: 1.85 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -1.35 Total: 9.37 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.80 Total: -57.00 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.17 Total: -17.04 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.34 -9.45 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190317492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.623 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds