Wall clock time and date at job start Fri Apr 10 2020 18:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36927 * 120.00184 * 2 1 4 4 H 1.08004 * 120.00649 * 147.78718 * 3 2 1 5 5 C 1.38817 * 120.00168 * 327.78853 * 3 2 1 6 6 N 1.31621 * 120.00242 * 154.16119 * 5 3 2 7 7 Si 1.86796 * 119.99857 * 334.16638 * 5 3 2 8 8 H 1.48510 * 109.46927 * 95.21232 * 7 5 3 9 9 H 1.48497 * 109.47453 * 215.21207 * 7 5 3 10 10 H 1.48507 * 109.47070 * 335.21608 * 7 5 3 11 11 C 1.46501 * 119.99948 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.77873 * 181.78541 * 11 2 1 13 13 C 1.55159 * 110.72147 * 58.54439 * 11 2 1 14 14 C 1.54917 * 101.57982 * 206.13480 * 13 11 2 15 15 N 1.47426 * 104.83083 * 37.01035 * 14 13 11 16 16 C 1.34775 * 125.64361 * 155.82595 * 15 14 13 17 17 O 1.21288 * 119.99795 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.00392 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47375 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47383 * 180.02562 * 19 18 16 21 21 N 1.46493 * 109.47408 * 180.02562 * 20 19 18 22 22 C 1.34778 * 120.00499 * 179.97438 * 21 20 19 23 23 O 1.21285 * 119.99510 * 0.02562 * 22 21 20 24 24 C 1.50699 * 120.00245 * 179.97438 * 22 21 20 25 25 C 1.53003 * 117.49660 * 248.74467 * 24 22 21 26 26 C 1.53003 * 117.49577 * 180.08712 * 24 22 21 27 27 C 1.47013 * 108.70537 * 335.86915 * 15 14 13 28 28 H 1.09002 * 109.46959 * 275.42445 * 1 2 3 29 29 H 1.08997 * 109.47498 * 35.42672 * 1 2 3 30 30 H 1.09004 * 109.47019 * 155.42847 * 1 2 3 31 31 H 0.96996 * 120.00142 * 180.02562 * 6 5 3 32 32 H 1.08997 * 111.00577 * 324.20629 * 13 11 2 33 33 H 1.08996 * 111.00263 * 88.06537 * 13 11 2 34 34 H 1.08998 * 110.36217 * 155.84960 * 14 13 11 35 35 H 1.09003 * 110.36389 * 278.05683 * 14 13 11 36 36 H 1.09001 * 109.47473 * 300.00107 * 18 16 15 37 37 H 1.09007 * 109.47362 * 59.99971 * 18 16 15 38 38 H 1.08997 * 109.47481 * 299.99983 * 19 18 16 39 39 H 1.09005 * 109.46816 * 60.00248 * 19 18 16 40 40 H 1.09004 * 109.46995 * 300.00469 * 20 19 18 41 41 H 1.08995 * 109.47140 * 60.00077 * 20 19 18 42 42 H 0.97007 * 119.99868 * 359.97438 * 21 20 19 43 43 H 1.09002 * 115.54842 * 34.41692 * 24 22 21 44 44 H 1.08993 * 117.49871 * 0.02562 * 25 24 22 45 45 H 1.09003 * 117.49618 * 145.02312 * 25 24 22 46 46 H 1.09004 * 117.49522 * 214.97347 * 26 24 22 47 47 H 1.08996 * 117.50035 * 359.97438 * 26 24 22 48 48 H 1.09000 * 109.88639 * 241.64338 * 27 15 14 49 49 H 1.09002 * 109.88383 * 120.47806 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1050 1.2579 0.4986 5 6 1.6159 2.2955 -0.6408 6 7 1.9536 3.5064 -0.2509 7 14 0.4182 2.0702 -2.0565 8 1 -0.9737 2.1442 -1.5438 9 1 0.6329 3.1417 -3.0619 10 1 0.6430 0.7456 -2.6890 11 6 2.1974 -1.2687 -0.0006 12 1 3.2729 -1.0943 0.0313 13 6 1.8161 -2.1223 -1.2389 14 6 2.1008 -3.5566 -0.7276 15 7 1.6924 -3.5403 0.6889 16 6 1.3237 -4.6160 1.4124 17 8 1.0054 -4.4844 2.5753 18 6 1.3069 -5.9821 0.7766 19 6 0.8554 -7.0188 1.8072 20 6 0.8389 -8.4060 1.1618 21 7 0.4060 -9.3986 2.1484 22 6 0.3150 -10.6979 1.8020 23 8 0.5920 -11.0454 0.6735 24 6 -0.1297 -11.7190 2.8171 25 6 0.9101 -12.7301 3.3043 26 6 -0.2108 -13.1778 2.3629 27 6 1.7530 -2.1564 1.1811 28 1 -0.3633 0.0972 1.0231 29 1 -0.3634 0.8374 -0.5957 30 1 -0.3633 -0.9346 -0.4274 31 1 1.5803 4.2818 -0.6984 32 1 0.7625 -1.9987 -1.4891 33 1 2.4498 -1.8785 -2.0915 34 1 1.5086 -4.2825 -1.2848 35 1 3.1626 -3.7869 -0.8155 36 1 0.6157 -5.9822 -0.0662 37 1 2.3082 -6.2317 0.4253 38 1 1.5469 -7.0188 2.6497 39 1 -0.1458 -6.7694 2.1588 40 1 0.1476 -8.4064 0.3190 41 1 1.8402 -8.6551 0.8105 42 1 0.1849 -9.1207 3.0511 43 1 -0.8721 -11.3739 3.5369 44 1 1.9159 -12.6564 2.8910 45 1 0.8516 -13.0506 4.3445 46 1 -1.0062 -13.7926 2.7842 47 1 0.0571 -13.3988 1.3297 48 1 2.4770 -2.0829 1.9927 49 1 0.7689 -1.8436 1.5301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190491623.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:16 Heat of formation + Delta-G solvation = -19.665548 kcal Electronic energy + Delta-G solvation = -26730.386905 eV Core-core repulsion = 22887.139644 eV Total energy + Delta-G solvation = -3843.247261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.33414 -39.94373 -37.81200 -36.84926 -35.69410 -35.01355 -32.99939 -31.84117 -30.28319 -28.76037 -27.43332 -26.24268 -24.69002 -23.42477 -22.89334 -22.49817 -21.95967 -20.43091 -19.43053 -19.04900 -17.85366 -17.13870 -17.04748 -16.52396 -16.29767 -16.02413 -15.57432 -15.18411 -15.15040 -14.55937 -14.41828 -14.09821 -13.69170 -13.22295 -13.14391 -12.98679 -12.83152 -12.49545 -12.47069 -12.37400 -12.19598 -12.02505 -11.89881 -11.78049 -11.50520 -11.23615 -11.10311 -11.05901 -10.98724 -10.91194 -10.58430 -10.25782 -10.23551 -10.01255 -9.76586 -9.58324 -9.45847 -8.56772 -8.47711 -7.02946 -6.07564 -3.43606 2.11213 2.67121 2.69106 3.12558 3.26378 3.39642 3.42087 3.45819 4.21715 4.31437 4.34716 4.40479 4.45750 4.63524 4.67209 4.68998 4.75830 4.89177 4.99095 5.12063 5.13344 5.18599 5.25230 5.27779 5.34790 5.37938 5.39427 5.46265 5.62350 5.65429 5.68652 5.76357 5.83252 5.86453 6.05635 6.06543 6.16362 6.26739 6.38384 6.41869 6.56511 6.66800 6.73254 7.10285 7.65062 7.84521 7.90846 8.23103 8.26749 8.86295 9.62269 9.98877 11.07828 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.039507 B = 0.001795 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.571885 B =15595.638127 C =15805.505868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.596 5.596 3 C -0.275 4.275 4 H 0.083 0.917 5 C 0.036 3.964 6 N -0.894 5.894 7 Si 0.882 3.118 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.271 1.271 11 C 0.172 3.828 12 H 0.089 0.911 13 C -0.158 4.158 14 C 0.099 3.901 15 N -0.614 5.614 16 C 0.524 3.476 17 O -0.548 6.548 18 C -0.132 4.132 19 C -0.116 4.116 20 C 0.118 3.882 21 N -0.725 5.725 22 C 0.541 3.459 23 O -0.542 6.542 24 C -0.197 4.197 25 C -0.153 4.153 26 C -0.148 4.148 27 C 0.089 3.911 28 H 0.021 0.979 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.404 0.596 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -29.028 3.528 29.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.318 5.318 3 C -0.403 4.403 4 H 0.101 0.899 5 C -0.165 4.165 6 N -0.534 5.534 7 Si 0.713 3.287 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.196 1.196 11 C 0.063 3.937 12 H 0.107 0.893 13 C -0.198 4.198 14 C -0.024 4.024 15 N -0.348 5.348 16 C 0.312 3.688 17 O -0.426 6.426 18 C -0.173 4.173 19 C -0.154 4.154 20 C -0.005 4.005 21 N -0.377 5.377 22 C 0.328 3.672 23 O -0.419 6.419 24 C -0.218 4.218 25 C -0.190 4.190 26 C -0.185 4.185 27 C -0.035 4.035 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.238 0.762 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.126 0.874 48 H 0.083 0.917 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.658 -29.015 3.349 29.328 hybrid contribution -0.892 0.352 -0.473 1.069 sum -3.549 -28.663 2.876 29.025 Atomic orbital electron populations 1.21322 0.84665 0.98659 0.98852 1.44022 1.00554 1.01369 1.85833 1.18795 1.06095 0.85496 1.29952 0.89933 1.25323 0.98192 0.94989 0.98030 1.69909 1.45849 0.97582 1.40085 0.86904 0.80412 0.77304 0.84049 1.21537 1.23101 1.19632 1.21456 0.96949 0.85331 0.89997 0.89335 1.23442 1.02720 0.93112 1.00544 1.22367 0.99749 0.99072 0.81218 1.48549 1.65884 1.07860 1.12503 1.20201 0.77028 0.85373 0.86164 1.90701 1.48984 1.86085 1.16819 1.21508 1.04141 0.91925 0.99717 1.21518 1.03712 0.91693 0.98464 1.21401 1.00640 0.86936 0.91562 1.45923 1.69171 1.07002 1.15586 1.19684 0.76884 0.82599 0.88049 1.90706 1.49643 1.80262 1.21323 1.22213 1.05340 0.91628 1.02658 1.22961 0.95195 1.00412 1.00437 1.22972 1.00923 0.93348 1.01288 1.22666 1.02300 0.79765 0.98780 0.96088 0.94176 0.94618 0.92596 0.90854 0.89976 0.91162 0.91247 0.88693 0.88655 0.90337 0.90352 0.91252 0.91264 0.76187 0.85763 0.88211 0.87678 0.87848 0.87370 0.91742 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.34 8.32 59.84 0.50 2.84 16 2 N -0.60 -13.50 2.58 -171.38 -0.44 -13.94 16 3 C -0.28 -7.42 9.88 -15.06 -0.15 -7.57 16 4 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 5 C 0.04 1.00 5.29 -17.43 -0.09 0.91 16 6 N -0.89 -26.68 13.97 55.49 0.78 -25.91 16 7 Si 0.88 21.65 25.06 -169.99 -4.26 17.39 16 8 H -0.29 -6.92 6.64 56.52 0.38 -6.54 16 9 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 C 0.17 3.12 3.43 -66.09 -0.23 2.90 16 12 H 0.09 1.61 7.95 -51.93 -0.41 1.20 16 13 C -0.16 -2.35 6.60 -24.58 -0.16 -2.51 16 14 C 0.10 1.14 6.69 -2.52 -0.02 1.13 16 15 N -0.61 -8.72 3.33 -170.52 -0.57 -9.28 16 16 C 0.52 7.24 7.85 -10.99 -0.09 7.16 16 17 O -0.55 -9.61 16.31 5.55 0.09 -9.52 16 18 C -0.13 -1.18 4.71 -27.89 -0.13 -1.32 16 19 C -0.12 -0.96 4.62 -26.73 -0.12 -1.08 16 20 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 21 N -0.73 -5.43 5.56 -60.30 -0.33 -5.77 16 22 C 0.54 5.05 7.61 -10.99 -0.08 4.97 16 23 O -0.54 -7.19 16.26 5.55 0.09 -7.10 16 24 C -0.20 -1.25 6.19 -91.77 -0.57 -1.82 16 25 C -0.15 -0.81 10.24 -26.69 -0.27 -1.08 16 26 C -0.15 -0.89 10.05 -26.69 -0.27 -1.16 16 27 C 0.09 1.52 6.50 -3.07 -0.02 1.50 16 28 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 29 H 0.04 0.93 2.63 -51.93 -0.14 0.79 16 30 H 0.04 0.66 6.37 -51.93 -0.33 0.33 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 32 H 0.07 1.16 6.36 -51.93 -0.33 0.83 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.64 7.47 -51.93 -0.39 0.26 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 37 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.40 2.11 8.47 -40.82 -0.35 1.76 16 43 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.11 0.83 7.67 -51.93 -0.40 0.43 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.07 1.34 6.90 -51.93 -0.36 0.98 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -34.42 391.30 -8.66 -43.08 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.18 Total: -0.61 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.73 Total: 5.77 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.57 Total: -54.90 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.18 Total: -16.62 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.26 Total: 17.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.42 -8.66 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190491623.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.414 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds