Wall clock time and date at job start Fri Apr 10 2020 18:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36927 * 120.00184 * 2 1 4 4 H 1.08004 * 120.00649 * 147.78718 * 3 2 1 5 5 C 1.38817 * 120.00168 * 327.78853 * 3 2 1 6 6 N 1.31621 * 120.00242 * 154.16119 * 5 3 2 7 7 Si 1.86796 * 119.99857 * 334.16638 * 5 3 2 8 8 H 1.48510 * 109.46927 * 95.21232 * 7 5 3 9 9 H 1.48497 * 109.47453 * 215.21207 * 7 5 3 10 10 H 1.48507 * 109.47070 * 335.21608 * 7 5 3 11 11 C 1.46501 * 119.99948 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.77873 * 181.78541 * 11 2 1 13 13 C 1.55159 * 110.72147 * 58.54439 * 11 2 1 14 14 C 1.54917 * 101.57982 * 206.13480 * 13 11 2 15 15 N 1.47426 * 104.83083 * 37.01035 * 14 13 11 16 16 C 1.34775 * 125.64361 * 155.82595 * 15 14 13 17 17 O 1.21288 * 119.99795 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.00392 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47375 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47383 * 180.02562 * 19 18 16 21 21 N 1.46493 * 109.47408 * 180.02562 * 20 19 18 22 22 C 1.34778 * 120.00499 * 179.97438 * 21 20 19 23 23 O 1.21285 * 119.99510 * 0.02562 * 22 21 20 24 24 C 1.50699 * 120.00245 * 179.97438 * 22 21 20 25 25 C 1.53003 * 117.49660 * 248.74467 * 24 22 21 26 26 C 1.53003 * 117.49577 * 180.08712 * 24 22 21 27 27 C 1.47013 * 108.70537 * 335.86915 * 15 14 13 28 28 H 1.09002 * 109.46959 * 275.42445 * 1 2 3 29 29 H 1.08997 * 109.47498 * 35.42672 * 1 2 3 30 30 H 1.09004 * 109.47019 * 155.42847 * 1 2 3 31 31 H 0.96996 * 120.00142 * 180.02562 * 6 5 3 32 32 H 1.08997 * 111.00577 * 324.20629 * 13 11 2 33 33 H 1.08996 * 111.00263 * 88.06537 * 13 11 2 34 34 H 1.08998 * 110.36217 * 155.84960 * 14 13 11 35 35 H 1.09003 * 110.36389 * 278.05683 * 14 13 11 36 36 H 1.09001 * 109.47473 * 300.00107 * 18 16 15 37 37 H 1.09007 * 109.47362 * 59.99971 * 18 16 15 38 38 H 1.08997 * 109.47481 * 299.99983 * 19 18 16 39 39 H 1.09005 * 109.46816 * 60.00248 * 19 18 16 40 40 H 1.09004 * 109.46995 * 300.00469 * 20 19 18 41 41 H 1.08995 * 109.47140 * 60.00077 * 20 19 18 42 42 H 0.97007 * 119.99868 * 359.97438 * 21 20 19 43 43 H 1.09002 * 115.54842 * 34.41692 * 24 22 21 44 44 H 1.08993 * 117.49871 * 0.02562 * 25 24 22 45 45 H 1.09003 * 117.49618 * 145.02312 * 25 24 22 46 46 H 1.09004 * 117.49522 * 214.97347 * 26 24 22 47 47 H 1.08996 * 117.50035 * 359.97438 * 26 24 22 48 48 H 1.09000 * 109.88639 * 241.64338 * 27 15 14 49 49 H 1.09002 * 109.88383 * 120.47806 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1050 1.2579 0.4986 5 6 1.6159 2.2955 -0.6408 6 7 1.9536 3.5064 -0.2509 7 14 0.4182 2.0702 -2.0565 8 1 -0.9737 2.1442 -1.5438 9 1 0.6329 3.1417 -3.0619 10 1 0.6430 0.7456 -2.6890 11 6 2.1974 -1.2687 -0.0006 12 1 3.2729 -1.0943 0.0313 13 6 1.8161 -2.1223 -1.2389 14 6 2.1008 -3.5566 -0.7276 15 7 1.6924 -3.5403 0.6889 16 6 1.3237 -4.6160 1.4124 17 8 1.0054 -4.4844 2.5753 18 6 1.3069 -5.9821 0.7766 19 6 0.8554 -7.0188 1.8072 20 6 0.8389 -8.4060 1.1618 21 7 0.4060 -9.3986 2.1484 22 6 0.3150 -10.6979 1.8020 23 8 0.5920 -11.0454 0.6735 24 6 -0.1297 -11.7190 2.8171 25 6 0.9101 -12.7301 3.3043 26 6 -0.2108 -13.1778 2.3629 27 6 1.7530 -2.1564 1.1811 28 1 -0.3633 0.0972 1.0231 29 1 -0.3634 0.8374 -0.5957 30 1 -0.3633 -0.9346 -0.4274 31 1 1.5803 4.2818 -0.6984 32 1 0.7625 -1.9987 -1.4891 33 1 2.4498 -1.8785 -2.0915 34 1 1.5086 -4.2825 -1.2848 35 1 3.1626 -3.7869 -0.8155 36 1 0.6157 -5.9822 -0.0662 37 1 2.3082 -6.2317 0.4253 38 1 1.5469 -7.0188 2.6497 39 1 -0.1458 -6.7694 2.1588 40 1 0.1476 -8.4064 0.3190 41 1 1.8402 -8.6551 0.8105 42 1 0.1849 -9.1207 3.0511 43 1 -0.8721 -11.3739 3.5369 44 1 1.9159 -12.6564 2.8910 45 1 0.8516 -13.0506 4.3445 46 1 -1.0062 -13.7926 2.7842 47 1 0.0571 -13.3988 1.3297 48 1 2.4770 -2.0829 1.9927 49 1 0.7689 -1.8436 1.5301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190491623.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:15 Heat of formation + Delta-G solvation = -43.788216 kcal Electronic energy + Delta-G solvation = -26731.432942 eV Core-core repulsion = 22887.139644 eV Total energy + Delta-G solvation = -3844.293299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.19042 -40.90839 -39.11334 -37.40850 -36.65210 -36.40144 -33.94859 -33.59334 -31.64300 -29.92341 -28.40856 -28.03175 -25.69690 -24.60264 -23.80058 -23.30838 -22.67430 -21.14044 -20.87714 -20.06440 -19.00778 -18.46412 -18.08913 -17.87691 -17.16548 -17.06637 -16.59588 -16.22557 -16.03286 -15.79134 -15.23530 -15.14696 -14.96843 -14.69472 -14.58747 -14.39879 -14.09877 -13.63820 -13.52747 -13.33703 -13.23911 -13.14119 -12.98625 -12.60122 -12.45230 -12.44270 -12.42377 -12.35798 -12.06013 -11.89794 -11.61404 -11.54562 -11.45220 -11.41129 -11.01175 -10.87221 -10.62774 -10.12570 -9.64876 -8.92572 -8.22377 -5.55005 1.31553 1.42493 1.45919 1.53829 1.64031 1.89354 2.22967 2.41805 2.92534 2.99532 3.29730 3.47521 3.71300 3.78061 3.86351 3.93323 3.97701 4.00651 4.00920 4.22206 4.24031 4.31442 4.34071 4.40058 4.48237 4.54516 4.61331 4.68606 4.70484 4.74518 4.76386 4.85092 4.92310 4.95744 4.99293 5.03442 5.11869 5.17964 5.22397 5.24322 5.27178 5.36076 5.43268 5.86705 6.13179 6.51227 6.58374 6.90077 7.15687 7.20528 7.58576 7.98270 8.97226 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.039507 B = 0.001795 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.571885 B =15595.638127 C =15805.505868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.608 5.608 3 C -0.266 4.266 4 H 0.047 0.953 5 C -0.022 4.022 6 N -0.945 5.945 7 Si 0.949 3.051 8 H -0.280 1.280 9 H -0.311 1.311 10 H -0.251 1.251 11 C 0.164 3.836 12 H 0.081 0.919 13 C -0.150 4.150 14 C 0.106 3.894 15 N -0.616 5.616 16 C 0.519 3.481 17 O -0.593 6.593 18 C -0.123 4.123 19 C -0.105 4.105 20 C 0.124 3.876 21 N -0.717 5.717 22 C 0.535 3.465 23 O -0.589 6.589 24 C -0.202 4.202 25 C -0.143 4.143 26 C -0.155 4.155 27 C 0.100 3.900 28 H 0.015 0.985 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.263 0.737 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.415 0.585 43 H 0.150 0.850 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.085 0.915 48 H 0.049 0.951 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 -32.186 2.477 32.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.331 5.331 3 C -0.395 4.395 4 H 0.065 0.935 5 C -0.219 4.219 6 N -0.589 5.589 7 Si 0.779 3.221 8 H -0.208 1.208 9 H -0.240 1.240 10 H -0.175 1.175 11 C 0.056 3.944 12 H 0.099 0.901 13 C -0.190 4.190 14 C -0.016 4.016 15 N -0.349 5.349 16 C 0.310 3.690 17 O -0.474 6.474 18 C -0.163 4.163 19 C -0.143 4.143 20 C 0.000 4.000 21 N -0.369 5.369 22 C 0.323 3.677 23 O -0.470 6.470 24 C -0.223 4.223 25 C -0.181 4.181 26 C -0.192 4.192 27 C -0.026 4.026 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.252 0.748 43 H 0.168 0.832 44 H 0.106 0.894 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.625 -32.226 2.302 32.510 hybrid contribution -0.518 1.308 -0.007 1.407 sum -4.143 -30.917 2.295 31.278 Atomic orbital electron populations 1.21340 0.83870 0.99673 0.98553 1.44056 1.01192 1.01593 1.86280 1.18705 1.04876 0.87395 1.28512 0.93515 1.25957 1.01002 0.94528 1.00429 1.70040 1.48646 0.98519 1.41681 0.85813 0.78355 0.77670 0.80294 1.20814 1.23977 1.17460 1.21567 0.96190 0.84132 0.92478 0.90089 1.23322 1.02544 0.94299 0.98818 1.22543 1.01979 0.97651 0.79415 1.48634 1.66005 1.06533 1.13740 1.21111 0.75558 0.86663 0.85665 1.90686 1.50825 1.86847 1.19016 1.21559 1.06374 0.88385 0.99971 1.21385 1.03037 0.91705 0.98172 1.21310 1.00555 0.86625 0.91516 1.45905 1.68235 1.06578 1.16156 1.20233 0.76128 0.83393 0.87983 1.90681 1.51891 1.81035 1.23346 1.22311 1.06464 0.90983 1.02517 1.23043 0.94255 0.99269 1.01489 1.23019 1.02106 0.93574 1.00493 1.22268 1.00486 0.81896 0.97938 0.96709 0.95597 0.91358 0.92770 0.91277 0.88988 0.87311 0.88891 0.86235 0.86067 0.91049 0.91158 0.91423 0.91360 0.74799 0.83203 0.89418 0.85188 0.85682 0.89647 0.93283 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.56 8.32 127.77 1.06 5.62 16 2 N -0.61 -27.41 2.58 -696.14 -1.80 -29.20 16 3 C -0.27 -14.66 9.88 84.04 0.83 -13.83 16 4 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 5 C -0.02 -1.28 5.29 84.86 0.45 -0.83 16 6 N -0.95 -58.33 13.97 21.65 0.30 -58.03 16 7 Si 0.95 44.83 25.06 68.60 1.72 46.54 16 8 H -0.28 -12.81 6.64 99.48 0.66 -12.15 16 9 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 10 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 11 C 0.16 5.80 3.43 46.18 0.16 5.95 16 12 H 0.08 2.95 7.95 -2.39 -0.02 2.93 16 13 C -0.15 -3.94 6.60 31.99 0.21 -3.73 16 14 C 0.11 1.96 6.69 86.86 0.58 2.54 16 15 N -0.62 -15.86 3.33 -811.78 -2.70 -18.56 16 16 C 0.52 13.11 7.85 87.66 0.69 13.79 16 17 O -0.59 -20.34 16.31 -3.05 -0.05 -20.39 16 18 C -0.12 -1.73 4.71 29.85 0.14 -1.59 16 19 C -0.10 -1.48 4.62 30.59 0.14 -1.33 16 20 C 0.12 1.67 5.67 86.38 0.49 2.16 16 21 N -0.72 -9.48 5.56 -463.07 -2.57 -12.05 16 22 C 0.53 9.36 7.61 87.66 0.67 10.03 16 23 O -0.59 -15.45 16.26 -3.04 -0.05 -15.50 16 24 C -0.20 -2.17 6.19 -11.54 -0.07 -2.25 16 25 C -0.14 -1.25 10.24 30.62 0.31 -0.94 16 26 C -0.15 -1.65 10.05 30.62 0.31 -1.34 16 27 C 0.10 3.35 6.50 86.73 0.56 3.91 16 28 H 0.01 0.62 8.06 -2.39 -0.02 0.60 16 29 H 0.03 1.16 2.63 -2.39 -0.01 1.15 16 30 H 0.07 2.37 6.37 -2.38 -0.02 2.35 16 31 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.07 1.90 6.36 -2.39 -0.02 1.89 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.11 1.29 7.47 -2.39 -0.02 1.27 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 1.19 7.85 -2.39 -0.02 1.17 16 37 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 39 H 0.07 1.13 8.10 -2.38 -0.02 1.11 16 40 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.42 3.49 8.47 -92.70 -0.79 2.70 16 43 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.08 1.32 7.67 -2.39 -0.02 1.30 16 48 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.05 1.86 6.90 -2.39 -0.02 1.85 16 Total: -1.00 -78.84 391.30 1.50 -77.34 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.12 Total: 11.67 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 6.53 Total: 18.17 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -6.77 Total: -117.85 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.10 Total: -35.88 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.72 Total: 46.54 kcal Total: -78.84 1.50 -77.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190491623.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.551 kcal (2) G-P(sol) polarization free energy of solvation -78.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds