Wall clock time and date at job start Fri Apr 10 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00153 * 2 1 4 4 H 1.48500 * 109.47228 * 89.99405 * 3 2 1 5 5 H 1.48494 * 109.47260 * 209.99902 * 3 2 1 6 6 H 1.48497 * 109.46861 * 329.99861 * 3 2 1 7 7 C 1.37882 * 119.99783 * 179.72123 * 2 1 3 8 8 H 1.08003 * 119.99963 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00239 * 0.02562 * 7 2 1 10 10 O 1.42105 * 106.40297 * 293.54008 * 9 7 2 11 11 O 1.42096 * 106.40404 * 66.45819 * 9 7 2 12 12 N 1.65595 * 107.22164 * 180.02562 * 9 7 2 13 13 C 1.46970 * 120.59481 * 269.72200 * 12 9 7 14 14 C 1.53815 * 108.39858 * 124.75564 * 13 12 9 15 15 N 1.46964 * 108.57975 * 49.63803 * 14 13 12 16 16 C 1.34772 * 120.59468 * 124.62657 * 15 14 13 17 17 O 1.21548 * 120.00162 * 176.24604 * 16 15 14 18 18 C 1.47848 * 119.99885 * 356.24599 * 16 15 14 19 19 C 1.39574 * 120.14505 * 51.25361 * 18 16 15 20 20 C 1.37960 * 119.85007 * 179.74699 * 19 18 16 21 21 C 1.38359 * 120.14443 * 0.53372 * 20 19 18 22 22 C 1.38354 * 120.29552 * 359.74200 * 21 20 19 23 23 C 1.37962 * 120.14141 * 359.97438 * 22 21 20 24 24 C 1.46967 * 118.81085 * 304.64892 * 15 14 13 25 25 C 1.46964 * 120.59394 * 89.99893 * 12 9 7 26 26 H 0.97006 * 120.00125 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.60658 * 244.53776 * 13 12 9 28 28 H 1.08996 * 109.60432 * 5.04700 * 13 12 9 29 29 H 1.09001 * 109.73822 * 289.84855 * 14 13 12 30 30 H 1.08998 * 109.53196 * 169.30609 * 14 13 12 31 31 H 1.08004 * 120.07095 * 0.02562 * 19 18 16 32 32 H 1.08004 * 119.92618 * 180.27791 * 20 19 18 33 33 H 1.08002 * 119.84895 * 179.76311 * 21 20 19 34 34 H 1.07992 * 119.93080 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.06952 * 180.02562 * 23 22 21 36 36 H 1.09007 * 109.61293 * 295.47924 * 24 15 14 37 37 H 1.09003 * 109.74930 * 175.05879 * 24 15 14 38 38 H 1.08998 * 109.61216 * 354.95066 * 25 12 9 39 39 H 1.09000 * 109.61175 * 115.29421 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0058 8 1 3.0846 -1.1941 0.0062 9 16 1.1236 -2.7200 0.0126 10 8 0.4509 -2.7895 1.2624 11 8 0.4519 -2.8011 -1.2370 12 7 2.2482 -3.9354 0.0193 13 6 2.7527 -4.4948 -1.2426 14 6 4.2871 -4.3874 -1.2422 15 7 4.7942 -4.9302 0.0259 16 6 5.7089 -5.9199 0.0314 17 8 6.1715 -6.3141 1.0841 18 6 6.1497 -6.5263 -1.2429 19 6 6.5865 -5.7148 -2.2911 20 6 7.0014 -6.2873 -3.4758 21 6 6.9747 -7.6620 -3.6299 22 6 6.5374 -8.4718 -2.5969 23 6 6.1253 -7.9124 -1.4050 24 6 4.2855 -4.3747 1.2879 25 6 2.7553 -4.4782 1.2874 26 1 -0.4850 -0.8401 -0.0004 27 1 2.4565 -5.5406 -1.3235 28 1 2.3452 -3.9306 -2.0815 29 1 4.5831 -3.3426 -1.3373 30 1 4.6929 -4.9623 -2.0746 31 1 6.6039 -4.6413 -2.1734 32 1 7.3440 -5.6607 -4.2861 33 1 7.2970 -8.1049 -4.5607 34 1 6.5186 -9.5441 -2.7237 35 1 5.7846 -8.5456 -0.5992 36 1 4.5814 -3.3290 1.3730 37 1 4.6901 -4.9388 2.1282 38 1 2.3495 -3.9033 2.1198 39 1 2.4568 -5.5221 1.3840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192932930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:29 Heat of formation + Delta-G solvation = -110.176862 kcal Electronic energy + Delta-G solvation = -25771.091182 eV Core-core repulsion = 21997.287076 eV Total energy + Delta-G solvation = -3773.804106 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63104 -39.52197 -38.53313 -37.80602 -36.59089 -35.47941 -34.96064 -32.95902 -31.94297 -31.65619 -28.27554 -27.71900 -25.33578 -24.67183 -23.42604 -22.74301 -21.44906 -20.79045 -19.58639 -18.65375 -17.93363 -17.50682 -17.14169 -16.95331 -16.87251 -16.62028 -15.76195 -15.70575 -15.57866 -15.51463 -15.27757 -14.75171 -14.65200 -14.39120 -14.24581 -13.76037 -13.43630 -13.32222 -13.07868 -12.97928 -12.92789 -12.75587 -12.63214 -12.57507 -12.33827 -12.06832 -11.96160 -11.94226 -11.20793 -11.08855 -10.92334 -10.35398 -9.92625 -9.87286 -9.56044 -9.35226 -7.63752 0.01098 0.03504 0.41473 1.46709 1.50958 1.51592 1.74989 1.82950 2.30867 2.48148 2.59683 2.80285 3.32415 3.45095 3.66365 3.73189 3.94117 3.96784 4.01621 4.11004 4.21494 4.24865 4.28565 4.34365 4.46636 4.51557 4.55604 4.59508 4.75333 4.81966 4.87644 4.98995 5.07433 5.27123 5.39653 5.41410 5.45300 5.54043 5.68165 5.80343 5.97002 6.22890 6.48441 6.93635 7.94724 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.003756 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.795379 B = 7452.481114 C = 7724.398633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.037 3.963 3 Si 1.121 2.879 4 H -0.258 1.258 5 H -0.247 1.247 6 H -0.269 1.269 7 C -1.092 5.092 8 H 0.123 0.877 9 S 2.694 3.306 10 O -1.042 7.042 11 O -1.038 7.038 12 N -1.001 6.001 13 C 0.104 3.896 14 C 0.088 3.912 15 N -0.597 5.597 16 C 0.560 3.440 17 O -0.577 6.577 18 C -0.145 4.145 19 C -0.100 4.100 20 C -0.121 4.121 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.088 4.088 24 C 0.101 3.899 25 C 0.111 3.889 26 H 0.256 0.744 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.437 -12.567 -8.331 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.173 4.173 3 Si 0.935 3.065 4 H -0.182 1.182 5 H -0.171 1.171 6 H -0.193 1.193 7 C -1.227 5.227 8 H 0.141 0.859 9 S 2.798 3.202 10 O -1.032 7.032 11 O -1.028 7.028 12 N -0.839 5.839 13 C -0.022 4.022 14 C -0.036 4.036 15 N -0.328 5.328 16 C 0.350 3.650 17 O -0.458 6.458 18 C -0.148 4.148 19 C -0.118 4.118 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.141 4.141 23 C -0.107 4.107 24 C -0.023 4.023 25 C -0.015 4.015 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.476 -11.377 -7.770 20.720 hybrid contribution -0.029 -1.345 0.485 1.430 sum 15.447 -12.721 -7.285 21.295 Atomic orbital electron populations 1.70985 1.08609 1.30746 1.40516 1.27746 0.95010 1.08336 0.86243 0.83045 0.75054 0.69031 0.79344 1.18224 1.17066 1.19339 1.31864 1.09117 1.13018 1.68681 0.85911 1.00669 0.73282 0.74546 0.71693 1.93361 1.74671 1.88473 1.46700 1.93359 1.74545 1.88422 1.46436 1.57467 1.61306 1.53183 1.11980 1.22013 0.94450 1.00366 0.85380 1.22692 0.93228 1.01286 0.86387 1.47975 1.40784 1.35991 1.08043 1.18878 0.78289 0.78383 0.89453 1.90742 1.57397 1.63443 1.34216 1.19810 1.05959 0.95337 0.93696 1.21513 0.97529 1.00258 0.92511 1.21489 0.99048 0.95931 0.97383 1.21767 0.96359 0.93675 0.99653 1.21426 0.98638 1.01638 0.92399 1.21255 0.98090 0.92702 0.98641 1.22000 0.92878 1.00264 0.87152 1.21786 0.93986 1.00358 0.85413 0.93316 0.89978 0.88401 0.89405 0.85326 0.84399 0.82623 0.82583 0.83109 0.86093 0.90066 0.87623 0.88883 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.64 13.66 21.45 0.29 -53.34 16 2 C 0.04 2.04 5.46 84.66 0.46 2.50 16 3 Si 1.12 45.23 29.90 68.60 2.05 47.28 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 7 C -1.09 -57.37 9.75 67.74 0.66 -56.71 16 8 H 0.12 5.75 7.81 -2.91 -0.02 5.73 16 9 S 2.69 137.68 4.34 -56.49 -0.25 137.44 16 10 O -1.04 -59.40 16.34 -128.00 -2.09 -61.49 16 11 O -1.04 -58.02 16.32 -128.00 -2.09 -60.11 16 12 N -1.00 -37.96 3.26 -511.42 -1.67 -39.63 16 13 C 0.10 3.15 6.58 86.56 0.57 3.72 16 14 C 0.09 2.13 5.62 86.57 0.49 2.61 16 15 N -0.60 -16.26 2.95 -820.54 -2.42 -18.68 16 16 C 0.56 15.88 7.23 86.79 0.63 16.50 16 17 O -0.58 -20.26 16.48 -3.87 -0.06 -20.32 16 18 C -0.15 -3.23 5.00 -20.09 -0.10 -3.33 16 19 C -0.10 -1.70 7.36 22.53 0.17 -1.53 16 20 C -0.12 -1.48 10.03 22.23 0.22 -1.26 16 21 C -0.10 -1.07 10.04 22.33 0.22 -0.85 16 22 C -0.12 -1.69 10.03 22.23 0.22 -1.46 16 23 C -0.09 -1.73 9.75 22.53 0.22 -1.51 16 24 C 0.10 2.94 6.58 86.41 0.57 3.51 16 25 C 0.11 3.66 6.55 86.42 0.57 4.22 16 26 H 0.26 16.37 6.52 -92.70 -0.60 15.77 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.10 3.12 7.08 -2.39 -0.02 3.10 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.13 2.40 4.50 -2.39 -0.01 2.39 16 31 H 0.14 2.09 7.11 -2.91 -0.02 2.07 16 32 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 34 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.11 2.99 7.02 -2.39 -0.02 2.97 16 38 H 0.09 3.29 7.09 -2.39 -0.02 3.28 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -79.42 336.45 -0.09 -79.51 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 1.24 Total: 22.93 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 4.90 Total: -33.59 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -3.79 Total: -111.65 kcal Atomic # 8 Polarization: -137.68 SS G_CDS: -4.24 Total: -141.92 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.05 Total: 47.28 kcal Atomic # 16 Polarization: 137.68 SS G_CDS: -0.25 Total: 137.44 kcal Total: -79.42 -0.09 -79.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192932930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.667 kcal (2) G-P(sol) polarization free energy of solvation -79.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds