Wall clock time and date at job start Fri Apr 10 2020 18:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00147 * 2 1 4 4 H 1.48502 * 109.47381 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.46999 * 30.00055 * 3 2 1 6 6 H 1.48500 * 109.47110 * 150.00078 * 3 2 1 7 7 C 1.37873 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08012 * 120.00027 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00306 * 179.97438 * 7 2 1 10 10 O 1.42102 * 106.39964 * 66.46055 * 9 7 2 11 11 O 1.42094 * 106.40306 * 293.54125 * 9 7 2 12 12 N 1.65602 * 107.21680 * 179.97438 * 9 7 2 13 13 C 1.47578 * 134.48896 * 90.00516 * 12 9 7 14 14 C 1.53949 * 86.11517 * 155.35514 * 13 12 9 15 15 N 1.46903 * 113.74088 * 137.95111 * 14 13 12 16 16 C 1.46475 * 110.99864 * 175.00064 * 15 14 13 17 17 C 1.53184 * 109.82722 * 162.95683 * 16 15 14 18 18 S 1.81818 * 108.67783 * 62.68167 * 17 16 15 19 19 O 1.42092 * 108.70335 * 61.93572 * 18 17 16 20 20 O 1.42103 * 108.70047 * 193.28764 * 18 17 16 21 21 C 1.81820 * 101.01797 * 307.68166 * 18 17 16 22 22 C 1.46509 * 110.94440 * 49.21775 * 15 14 13 23 23 C 1.47585 * 134.49279 * 269.99792 * 12 9 7 24 24 H 0.97006 * 119.99865 * 359.97438 * 1 2 3 25 25 H 1.08996 * 113.77303 * 41.05914 * 13 12 9 26 26 H 1.08997 * 113.87061 * 269.66566 * 13 12 9 27 27 H 1.09002 * 113.74479 * 269.15074 * 14 13 12 28 28 H 1.09002 * 109.40111 * 42.86906 * 16 15 14 29 29 H 1.09003 * 109.39765 * 283.04659 * 16 15 14 30 30 H 1.08999 * 109.60266 * 182.43644 * 17 16 15 31 31 H 1.08995 * 109.60047 * 302.91982 * 17 16 15 32 32 H 1.09000 * 109.60043 * 172.07838 * 21 18 17 33 33 H 1.09003 * 109.60085 * 292.55739 * 21 18 17 34 34 H 1.09006 * 109.46282 * 76.94191 * 22 15 14 35 35 H 1.08995 * 109.34107 * 317.11477 * 22 15 14 36 36 H 1.09000 * 113.76525 * 90.34310 * 23 12 9 37 37 H 1.08998 * 113.77070 * 318.94399 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 16 3.7665 -1.1941 -0.0012 10 8 4.1683 -0.6499 1.2485 11 8 4.1673 -0.6494 -1.2509 12 7 4.2566 -2.7759 -0.0011 13 6 4.5624 -3.7640 -1.0538 14 6 5.4476 -4.4557 -0.0012 15 7 5.3315 -5.9201 -0.0009 16 6 6.2818 -6.5218 0.9374 17 6 5.8703 -7.9662 1.2391 18 16 5.9431 -8.9265 -0.3031 19 8 7.2824 -8.9258 -0.7775 20 8 5.2770 -10.1653 -0.1002 21 6 4.9336 -7.8911 -1.4052 22 6 5.4689 -6.4567 -1.3572 23 6 4.5632 -3.7636 1.0518 24 1 -0.4850 0.8401 0.0004 25 1 5.1203 -3.3518 -1.8945 26 1 3.7030 -4.3582 -1.3640 27 1 6.4819 -4.1115 -0.0028 28 1 6.2898 -5.9467 1.8633 29 1 7.2791 -6.5138 0.4976 30 1 6.5547 -8.3963 1.9703 31 1 4.8539 -7.9822 1.6323 32 1 4.9978 -8.2715 -2.4246 33 1 3.8960 -7.9056 -1.0717 34 1 6.5204 -6.4528 -1.6445 35 1 4.9020 -5.8353 -2.0504 36 1 3.7028 -4.3569 1.3615 37 1 5.1217 -3.3511 1.8921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:43 Heat of formation + Delta-G solvation = -91.555868 kcal Electronic energy + Delta-G solvation = -23992.593936 eV Core-core repulsion = 20219.208153 eV Total energy + Delta-G solvation = -3773.385783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.069 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.91917 -37.46686 -36.77321 -36.31131 -35.69435 -34.51467 -33.07306 -32.29003 -30.66492 -26.60097 -26.42367 -26.31034 -24.09755 -22.22739 -20.32808 -19.12773 -18.77093 -17.68538 -17.35610 -16.79575 -16.64898 -16.18227 -15.94513 -15.80740 -15.27451 -14.85483 -14.81650 -13.90339 -13.63310 -13.54054 -13.23631 -13.04090 -12.88888 -12.82116 -12.56678 -12.45958 -12.30893 -12.26308 -12.16579 -12.08460 -11.47046 -11.24357 -10.98340 -10.79100 -10.74715 -10.67995 -10.55820 -10.42227 -9.88251 -9.27567 -9.25559 -8.87275 -8.41186 -6.85003 -5.38947 -0.28615 1.82874 2.33157 3.02493 3.12899 3.20224 3.22854 3.33980 3.74084 3.89831 3.96844 4.03782 4.30001 4.33606 4.48944 4.53382 4.71149 4.78925 4.84077 4.98038 5.08682 5.27489 5.29228 5.36146 5.38281 5.44491 5.51866 5.63261 5.75578 5.79653 5.96597 6.51754 6.64578 6.83643 6.85609 7.44504 8.16814 8.65778 10.27549 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.003057 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.010653 B = 9155.619874 C = 9322.332189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.152 3.848 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.018 5.018 8 H 0.120 0.880 9 S 2.694 3.306 10 O -1.001 7.001 11 O -1.004 7.004 12 N -1.033 6.033 13 C 0.131 3.869 14 C 0.045 3.955 15 N -0.546 5.546 16 C 0.063 3.937 17 C -0.594 4.594 18 S 2.410 3.590 19 O -0.942 6.942 20 O -0.945 6.945 21 C -0.594 4.594 22 C 0.057 3.943 23 C 0.141 3.859 24 H 0.281 0.719 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.731 -15.396 0.092 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.153 5.153 8 H 0.138 0.862 9 S 2.798 3.202 10 O -0.991 6.991 11 O -0.995 6.995 12 N -0.869 5.869 13 C 0.005 3.995 14 C -0.065 4.065 15 N -0.272 5.272 16 C -0.066 4.066 17 C -0.725 4.725 18 S 2.593 3.407 19 O -0.939 6.939 20 O -0.942 6.942 21 C -0.724 4.724 22 C -0.071 4.071 23 C 0.015 3.985 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.067 -15.278 0.076 18.866 hybrid contribution -0.416 1.306 -0.071 1.372 sum 10.651 -13.972 0.005 17.569 Atomic orbital electron populations 1.69989 1.06593 1.29074 1.39531 1.24443 0.94805 0.98819 0.88654 0.87874 0.83583 0.84566 0.81868 1.16971 1.17771 1.14234 1.30580 1.15878 1.02123 1.66673 0.86178 1.00904 0.76903 0.69218 0.73173 1.93463 1.85422 1.74962 1.45285 1.93404 1.85447 1.75110 1.45499 1.60221 1.85348 1.26940 1.14392 1.22731 0.97296 0.87936 0.91543 1.24000 0.99224 0.83900 0.99355 1.61468 1.52164 1.06144 1.07437 1.21790 0.93854 0.92046 0.98924 1.30197 1.12233 1.08832 1.21197 1.08202 0.76370 0.76833 0.79300 1.93591 1.33901 1.87068 1.79359 1.93600 1.76458 1.39001 1.85164 1.30198 1.16186 1.09566 1.16445 1.21858 1.01098 0.92873 0.91321 1.22640 0.97384 0.87307 0.91188 0.90862 0.89901 0.89344 0.89419 0.87881 0.92183 0.84532 0.83774 0.84421 0.83742 0.92058 0.87507 0.89203 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.61 13.96 55.43 0.77 -22.84 16 2 C 0.15 4.35 5.47 -17.82 -0.10 4.25 16 3 Si 0.80 20.34 26.54 -169.99 -4.51 15.83 16 4 H -0.25 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.25 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.22 -5.67 5.61 56.52 0.32 -5.35 16 7 C -1.02 -28.14 10.29 30.60 0.31 -27.83 16 8 H 0.12 3.36 8.06 -52.48 -0.42 2.94 16 9 S 2.69 65.85 4.73 -107.50 -0.51 65.34 16 10 O -1.00 -26.27 15.99 -57.17 -0.91 -27.18 16 11 O -1.00 -26.22 16.80 -57.17 -0.96 -27.18 16 12 N -1.03 -18.70 4.11 -118.92 -0.49 -19.19 16 13 C 0.13 1.77 7.18 -2.97 -0.02 1.75 16 14 C 0.04 0.48 3.41 -69.92 -0.24 0.24 16 15 N -0.55 -4.53 4.41 -228.99 -1.01 -5.54 16 16 C 0.06 0.42 5.38 -3.96 -0.02 0.40 16 17 C -0.59 -3.34 6.57 37.25 0.24 -3.09 16 18 S 2.41 18.31 5.34 -107.50 -0.57 17.73 16 19 O -0.94 -10.18 18.10 -57.81 -1.05 -11.22 16 20 O -0.95 -10.62 18.11 -57.81 -1.05 -11.67 16 21 C -0.59 -3.54 6.58 37.25 0.24 -3.30 16 22 C 0.06 0.41 5.26 -3.94 -0.02 0.39 16 23 C 0.14 1.93 8.77 -2.97 -0.03 1.91 16 24 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.09 1.07 7.54 -51.93 -0.39 0.68 16 27 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 28 H 0.10 0.62 7.97 -51.93 -0.41 0.21 16 29 H 0.06 0.37 7.93 -51.93 -0.41 -0.04 16 30 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 35 H 0.11 0.73 6.07 -51.93 -0.32 0.42 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -38.44 325.72 -9.97 -48.41 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.97 Total: -2.12 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 0.38 Total: -25.28 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.73 Total: -47.57 kcal Atomic # 8 Polarization: -73.28 SS G_CDS: -3.97 Total: -77.25 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.51 Total: 15.83 kcal Atomic # 16 Polarization: 84.16 SS G_CDS: -1.08 Total: 83.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -38.44 -9.97 -48.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.147 kcal (2) G-P(sol) polarization free energy of solvation -38.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds