Wall clock time and date at job start Fri Apr 10 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00147 * 2 1 4 4 H 1.48502 * 109.47381 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.46999 * 30.00055 * 3 2 1 6 6 H 1.48500 * 109.47110 * 150.00078 * 3 2 1 7 7 C 1.37873 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08012 * 120.00027 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00306 * 179.97438 * 7 2 1 10 10 O 1.42102 * 106.39964 * 66.46055 * 9 7 2 11 11 O 1.42094 * 106.40306 * 293.54125 * 9 7 2 12 12 N 1.65602 * 107.21680 * 179.97438 * 9 7 2 13 13 C 1.47578 * 134.48896 * 90.00516 * 12 9 7 14 14 C 1.53949 * 86.11517 * 155.35514 * 13 12 9 15 15 N 1.46903 * 113.74088 * 137.95111 * 14 13 12 16 16 C 1.46475 * 110.99864 * 175.00064 * 15 14 13 17 17 C 1.53184 * 109.82722 * 162.95683 * 16 15 14 18 18 S 1.81818 * 108.67783 * 62.68167 * 17 16 15 19 19 O 1.42092 * 108.70335 * 61.93572 * 18 17 16 20 20 O 1.42103 * 108.70047 * 193.28764 * 18 17 16 21 21 C 1.81820 * 101.01797 * 307.68166 * 18 17 16 22 22 C 1.46509 * 110.94440 * 49.21775 * 15 14 13 23 23 C 1.47585 * 134.49279 * 269.99792 * 12 9 7 24 24 H 0.97006 * 119.99865 * 359.97438 * 1 2 3 25 25 H 1.08996 * 113.77303 * 41.05914 * 13 12 9 26 26 H 1.08997 * 113.87061 * 269.66566 * 13 12 9 27 27 H 1.09002 * 113.74479 * 269.15074 * 14 13 12 28 28 H 1.09002 * 109.40111 * 42.86906 * 16 15 14 29 29 H 1.09003 * 109.39765 * 283.04659 * 16 15 14 30 30 H 1.08999 * 109.60266 * 182.43644 * 17 16 15 31 31 H 1.08995 * 109.60047 * 302.91982 * 17 16 15 32 32 H 1.09000 * 109.60043 * 172.07838 * 21 18 17 33 33 H 1.09003 * 109.60085 * 292.55739 * 21 18 17 34 34 H 1.09006 * 109.46282 * 76.94191 * 22 15 14 35 35 H 1.08995 * 109.34107 * 317.11477 * 22 15 14 36 36 H 1.09000 * 113.76525 * 90.34310 * 23 12 9 37 37 H 1.08998 * 113.77070 * 318.94399 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 16 3.7665 -1.1941 -0.0012 10 8 4.1683 -0.6499 1.2485 11 8 4.1673 -0.6494 -1.2509 12 7 4.2566 -2.7759 -0.0011 13 6 4.5624 -3.7640 -1.0538 14 6 5.4476 -4.4557 -0.0012 15 7 5.3315 -5.9201 -0.0009 16 6 6.2818 -6.5218 0.9374 17 6 5.8703 -7.9662 1.2391 18 16 5.9431 -8.9265 -0.3031 19 8 7.2824 -8.9258 -0.7775 20 8 5.2770 -10.1653 -0.1002 21 6 4.9336 -7.8911 -1.4052 22 6 5.4689 -6.4567 -1.3572 23 6 4.5632 -3.7636 1.0518 24 1 -0.4850 0.8401 0.0004 25 1 5.1203 -3.3518 -1.8945 26 1 3.7030 -4.3582 -1.3640 27 1 6.4819 -4.1115 -0.0028 28 1 6.2898 -5.9467 1.8633 29 1 7.2791 -6.5138 0.4976 30 1 6.5547 -8.3963 1.9703 31 1 4.8539 -7.9822 1.6323 32 1 4.9978 -8.2715 -2.4246 33 1 3.8960 -7.9056 -1.0717 34 1 6.5204 -6.4528 -1.6445 35 1 4.9020 -5.8353 -2.0504 36 1 3.7028 -4.3569 1.3615 37 1 5.1217 -3.3511 1.8921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:38 Heat of formation + Delta-G solvation = -126.876363 kcal Electronic energy + Delta-G solvation = -23994.125547 eV Core-core repulsion = 20219.208153 eV Total energy + Delta-G solvation = -3774.917394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.069 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -40.82736 -38.23402 -37.68025 -37.55275 -37.02116 -36.50735 -35.19921 -32.79692 -31.41075 -28.55504 -27.68403 -27.31745 -24.69073 -22.92371 -21.31997 -20.59854 -19.71138 -19.22358 -18.71810 -18.08694 -17.26247 -17.22417 -16.90771 -16.83800 -16.52495 -16.18213 -15.59177 -15.49576 -15.04903 -14.84007 -14.70858 -14.05185 -13.87456 -13.64275 -13.56501 -13.45363 -13.23306 -13.15926 -13.06142 -13.03987 -12.84263 -12.74342 -12.66158 -12.60598 -12.33172 -11.75316 -11.66275 -11.53044 -11.35325 -11.23588 -10.95859 -9.88532 -9.47029 -8.98473 -7.54063 -0.85184 0.04345 1.03217 1.12425 1.19279 1.80213 1.87030 2.34795 2.40200 2.62959 2.78639 3.13591 3.23674 3.38183 3.69489 3.77828 3.82935 3.88624 4.07360 4.15402 4.28748 4.34721 4.39294 4.57767 4.72311 4.72759 4.78625 4.87890 4.93626 5.00547 5.10024 5.28896 5.32273 5.61623 5.86040 5.95412 6.00842 6.52390 8.19573 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.003057 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.010653 B = 9155.619874 C = 9322.332189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.106 3.894 3 Si 0.825 3.175 4 H -0.239 1.239 5 H -0.220 1.220 6 H -0.227 1.227 7 C -1.044 5.044 8 H 0.102 0.898 9 S 2.718 3.282 10 O -1.024 7.024 11 O -1.025 7.025 12 N -1.044 6.044 13 C 0.119 3.881 14 C 0.072 3.928 15 N -0.548 5.548 16 C 0.055 3.945 17 C -0.579 4.579 18 S 2.414 3.586 19 O -0.979 6.979 20 O -0.988 6.988 21 C -0.582 4.582 22 C 0.048 3.952 23 C 0.130 3.870 24 H 0.291 0.709 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.876 -15.831 0.330 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.110 4.110 3 Si 0.642 3.358 4 H -0.162 1.162 5 H -0.142 1.142 6 H -0.150 1.150 7 C -1.176 5.176 8 H 0.120 0.880 9 S 2.820 3.180 10 O -1.014 7.014 11 O -1.016 7.016 12 N -0.885 5.885 13 C -0.006 4.006 14 C -0.038 4.038 15 N -0.274 5.274 16 C -0.074 4.074 17 C -0.711 4.711 18 S 2.601 3.399 19 O -0.976 6.976 20 O -0.985 6.985 21 C -0.714 4.714 22 C -0.080 4.080 23 C 0.005 3.995 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.187 -15.735 0.306 19.905 hybrid contribution -0.781 1.301 -0.140 1.523 sum 11.406 -14.434 0.166 18.398 Atomic orbital electron populations 1.70021 1.07545 1.30470 1.40593 1.25212 0.95641 1.01565 0.88600 0.87493 0.82933 0.82751 0.82640 1.16198 1.14160 1.14984 1.31231 1.18841 1.01410 1.66140 0.88009 0.99889 0.75057 0.70910 0.72145 1.93419 1.85016 1.76954 1.46009 1.93363 1.85029 1.77045 1.46149 1.59862 1.84244 1.26341 1.18012 1.23159 0.98634 0.87002 0.91783 1.23606 0.98897 0.85296 0.95990 1.61369 1.53101 1.04531 1.08426 1.21961 0.93893 0.92406 0.99128 1.30079 1.13750 1.07523 1.19768 1.07849 0.75392 0.76599 0.80032 1.93540 1.35920 1.87737 1.80420 1.93546 1.76923 1.42029 1.86030 1.30104 1.16118 1.08170 1.16979 1.22006 1.01957 0.93306 0.90739 1.23033 0.98586 0.86422 0.91476 0.89869 0.89050 0.88128 0.87671 0.86646 0.91351 0.82572 0.82425 0.82750 0.82573 0.91147 0.87006 0.88383 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.61 13.96 21.45 0.30 -49.32 16 2 C 0.11 6.10 5.47 84.65 0.46 6.56 16 3 Si 0.82 40.82 26.54 68.60 1.82 42.64 16 4 H -0.24 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.22 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.23 -11.49 5.61 99.48 0.56 -10.94 16 7 C -1.04 -58.55 10.29 67.73 0.70 -57.85 16 8 H 0.10 5.86 8.06 -2.90 -0.02 5.84 16 9 S 2.72 131.83 4.73 -56.49 -0.27 131.57 16 10 O -1.02 -53.28 15.99 -128.00 -2.05 -55.32 16 11 O -1.03 -53.06 16.80 -128.00 -2.15 -55.21 16 12 N -1.04 -36.32 4.11 -530.14 -2.18 -38.50 16 13 C 0.12 2.94 7.18 86.48 0.62 3.56 16 14 C 0.07 1.32 3.41 46.67 0.16 1.48 16 15 N -0.55 -7.21 4.41 -878.39 -3.88 -11.08 16 16 C 0.05 0.54 5.38 86.45 0.46 1.00 16 17 C -0.58 -4.75 6.57 72.04 0.47 -4.28 16 18 S 2.41 32.74 5.34 -56.49 -0.30 32.44 16 19 O -0.98 -20.03 18.10 -127.39 -2.31 -22.33 16 20 O -0.99 -21.52 18.11 -127.39 -2.31 -23.83 16 21 C -0.58 -5.43 6.58 72.04 0.47 -4.96 16 22 C 0.05 0.54 5.26 86.44 0.45 1.00 16 23 C 0.13 3.25 8.77 86.48 0.76 4.01 16 24 H 0.29 15.16 8.31 -92.70 -0.77 14.39 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.10 2.21 7.54 -2.39 -0.02 2.19 16 27 H 0.11 1.62 8.10 -2.39 -0.02 1.60 16 28 H 0.12 0.92 7.97 -2.39 -0.02 0.90 16 29 H 0.07 0.61 7.93 -2.39 -0.02 0.59 16 30 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 0.70 7.93 -2.38 -0.02 0.68 16 35 H 0.11 1.18 6.07 -2.39 -0.01 1.16 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -83.65 325.72 -7.82 -91.46 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 0.93 Total: 6.95 kcal Atomic # 6 Polarization: -54.04 SS G_CDS: 4.57 Total: -49.47 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -5.76 Total: -98.89 kcal Atomic # 8 Polarization: -147.88 SS G_CDS: -8.81 Total: -156.69 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.82 Total: 42.64 kcal Atomic # 16 Polarization: 164.58 SS G_CDS: -0.57 Total: 164.01 kcal Total: -83.65 -7.82 -91.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.413 kcal (2) G-P(sol) polarization free energy of solvation -83.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds