Wall clock time and date at job start Fri Apr 10 2020 18:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00214 * 2 1 4 4 C 1.38665 * 119.98438 * 359.97438 * 3 2 1 5 5 C 1.38836 * 120.00632 * 179.97438 * 4 3 2 6 6 N 1.39664 * 120.01616 * 179.97438 * 5 4 3 7 7 S 1.65602 * 120.00003 * 45.00216 * 6 5 4 8 8 O 1.42100 * 106.40050 * 178.53829 * 7 6 5 9 9 O 1.42101 * 106.40128 * 311.46227 * 7 6 5 10 10 C 1.76199 * 107.21615 * 64.99888 * 7 6 5 11 11 H 1.07998 * 119.99909 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99945 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00479 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 119.99913 * 0.02562 * 12 10 7 15 15 H 1.48503 * 109.47183 * 89.99821 * 14 12 10 16 16 H 1.48504 * 109.47067 * 209.99627 * 14 12 10 17 17 H 1.48497 * 109.47454 * 329.99654 * 14 12 10 18 18 C 1.38860 * 119.96795 * 0.02794 * 5 4 3 19 19 C 1.38713 * 119.97191 * 359.97438 * 18 5 4 20 20 N 1.40207 * 120.00101 * 179.97438 * 19 18 5 21 21 C 1.34725 * 126.83817 * 184.73494 * 20 19 18 22 22 N 1.30852 * 108.02619 * 179.89938 * 21 20 19 23 23 C 1.33261 * 109.84654 * 0.38020 * 22 21 20 24 24 N 1.30752 * 108.99740 * 359.76529 * 23 22 21 25 25 C 1.38650 * 119.98399 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47126 * 59.99798 * 1 2 3 27 27 H 1.08998 * 109.47566 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46947 * 300.00378 * 1 2 3 29 29 H 1.08004 * 119.99652 * 359.73059 * 4 3 2 30 30 H 0.97002 * 119.99805 * 225.00338 * 6 5 4 31 31 H 0.96998 * 120.00883 * 180.02562 * 13 12 10 32 32 H 1.08009 * 120.01227 * 180.02562 * 18 5 4 33 33 H 1.07999 * 125.98732 * 0.04073 * 21 20 19 34 34 H 1.07999 * 125.50132 * 179.74879 * 23 22 21 35 35 H 1.08001 * 119.98712 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2905 2.3736 -0.0005 5 6 1.9204 3.6108 0.0000 6 7 1.1597 4.7821 -0.0011 7 16 -0.1430 4.9243 1.0115 8 8 -0.6762 6.2242 0.7991 9 8 -0.9058 3.7359 0.8533 10 6 0.4745 4.9032 2.6616 11 1 1.5355 4.8096 2.8400 12 6 -0.3968 5.0073 3.7251 13 7 0.0639 4.9921 4.9567 14 14 -2.2320 5.1699 3.4164 15 1 -2.8470 3.8192 3.3655 16 1 -2.8510 5.9546 4.5148 17 1 -2.4569 5.8652 2.1237 18 6 3.3071 3.6832 0.0005 19 6 4.0618 2.5193 0.0010 20 7 5.4620 2.5917 0.0009 21 6 6.3241 1.5602 -0.0876 22 7 7.5394 2.0443 -0.0552 23 6 7.4949 3.3711 0.0611 24 7 6.2451 3.7533 0.0995 25 6 3.4307 1.2829 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2120 2.3167 -0.0054 30 1 1.3943 5.5123 -0.5950 31 1 -0.5490 5.0649 5.7049 32 1 3.7979 4.6454 0.0013 33 1 6.0587 0.5168 -0.1730 34 1 8.3527 4.0250 0.1151 35 1 4.0184 0.3768 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192981961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:10 Heat of formation + Delta-G solvation = 17.101849 kcal Electronic energy + Delta-G solvation = -25102.094484 eV Core-core repulsion = 21230.269253 eV Total energy + Delta-G solvation = -3871.825231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.38365 -40.14993 -37.90565 -36.02539 -35.33823 -34.74307 -33.17684 -32.82101 -31.47070 -29.58303 -28.93085 -27.00994 -26.55839 -24.09448 -22.97609 -21.36793 -21.25338 -19.48472 -18.91380 -17.73967 -17.14776 -16.73972 -16.23762 -16.06735 -15.91174 -15.66315 -15.54105 -15.13560 -15.05702 -14.24648 -14.12200 -13.72044 -13.49240 -13.03472 -12.93164 -12.57881 -12.38023 -11.94902 -11.81341 -11.57773 -11.40414 -11.31346 -11.13232 -10.84303 -10.79433 -10.51207 -10.23152 -10.01171 -9.99037 -9.79752 -9.34042 -9.16613 -8.21122 -8.06988 -6.91862 -5.49168 0.68504 1.30795 1.73958 1.97910 2.08004 2.78950 2.96735 3.05568 3.13752 3.33424 3.71711 3.81527 3.88951 4.12630 4.43735 4.46571 4.79065 4.89765 5.03505 5.09771 5.21450 5.27692 5.37970 5.43847 5.48585 5.68160 5.80212 5.89182 6.04757 6.14592 6.24834 6.32388 6.53963 6.65456 6.89580 7.30415 7.35903 7.43247 7.87758 8.09635 8.56336 10.20288 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.004500 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.621223 B = 6220.430184 C = 7057.079397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.313 6.313 3 C 0.175 3.825 4 C -0.237 4.237 5 C 0.238 3.762 6 N -1.060 6.060 7 S 2.667 3.333 8 O -0.995 6.995 9 O -1.002 7.002 10 C -1.011 5.011 11 H 0.124 0.876 12 C 0.154 3.846 13 N -0.816 5.816 14 Si 0.802 3.198 15 H -0.244 1.244 16 H -0.253 1.253 17 H -0.221 1.221 18 C -0.166 4.166 19 C 0.195 3.805 20 N -0.322 5.322 21 C 0.262 3.738 22 N -0.542 5.542 23 C 0.200 3.800 24 N -0.307 5.307 25 C -0.188 4.188 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.176 0.824 30 H 0.420 0.580 31 H 0.283 0.717 32 H 0.144 0.856 33 H 0.224 0.776 34 H 0.222 0.778 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -8.152 -10.180 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.226 6.226 3 C 0.128 3.872 4 C -0.259 4.259 5 C 0.139 3.861 6 N -0.805 5.805 7 S 2.770 3.230 8 O -0.985 6.985 9 O -0.992 6.992 10 C -1.146 5.146 11 H 0.142 0.858 12 C -0.066 4.066 13 N -0.444 5.444 14 Si 0.621 3.379 15 H -0.168 1.168 16 H -0.177 1.177 17 H -0.143 1.143 18 C -0.190 4.190 19 C 0.102 3.898 20 N -0.106 5.106 21 C -0.033 4.033 22 N -0.268 5.268 23 C -0.102 4.102 24 N -0.133 5.133 25 C -0.210 4.210 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.193 0.807 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.162 0.838 33 H 0.240 0.760 34 H 0.238 0.762 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.487 -7.755 -10.137 13.893 hybrid contribution -0.385 0.445 0.474 0.756 sum 5.102 -7.310 -9.663 13.147 Atomic orbital electron populations 1.23215 0.77241 1.03843 1.03093 1.85998 1.22311 1.25918 1.88327 1.18151 0.90690 0.84414 0.93956 1.22196 1.03767 0.90625 1.09295 1.16735 0.89366 0.85586 0.94378 1.53573 1.49200 1.21925 1.55768 1.01804 0.71562 0.73486 0.76103 1.93511 1.76680 1.40825 1.87488 1.93331 1.68722 1.49374 1.87724 1.30235 1.06520 1.66795 1.11065 0.85787 1.24403 0.99170 0.88794 0.94252 1.69976 1.37059 1.38613 0.98751 0.87865 0.84759 0.81831 0.83405 1.16811 1.17655 1.14334 1.20715 0.92265 0.98128 1.07930 1.16704 0.77623 0.94011 1.01503 1.47639 1.05356 1.05483 1.52073 1.26218 0.84537 0.96611 0.95930 1.70623 1.21822 1.09846 1.24537 1.26167 0.94962 0.91395 0.97668 1.78210 1.03708 1.05917 1.25432 1.19639 0.92305 0.95862 1.13239 0.92177 0.88210 0.90998 0.80724 0.74514 0.90669 0.83820 0.76031 0.76176 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.31 10.49 -19.41 -0.20 -4.51 16 3 C 0.18 2.66 6.68 -39.27 -0.26 2.39 16 4 C -0.24 -4.10 8.16 -39.20 -0.32 -4.42 16 5 C 0.24 4.23 6.21 -83.84 -0.52 3.71 16 6 N -1.06 -19.51 5.76 32.39 0.19 -19.33 16 7 S 2.67 62.46 4.16 -107.50 -0.45 62.01 16 8 O -0.99 -25.19 16.02 -57.17 -0.92 -26.11 16 9 O -1.00 -23.70 13.75 -57.17 -0.79 -24.49 16 10 C -1.01 -27.30 10.22 30.60 0.31 -26.99 16 11 H 0.12 3.48 8.06 -52.49 -0.42 3.05 16 12 C 0.15 4.28 5.47 -17.82 -0.10 4.18 16 13 N -0.82 -22.98 13.96 55.43 0.77 -22.21 16 14 Si 0.80 19.56 26.54 -169.99 -4.51 15.05 16 15 H -0.24 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.25 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.22 -5.46 5.61 56.52 0.32 -5.15 16 18 C -0.17 -2.73 9.60 -39.18 -0.38 -3.10 16 19 C 0.19 2.89 6.68 -83.64 -0.56 2.33 16 20 N -0.32 -4.50 3.82 -11.84 -0.05 -4.55 16 21 C 0.26 3.00 11.97 -90.37 -1.08 1.92 16 22 N -0.54 -6.80 11.19 -15.74 -0.18 -6.97 16 23 C 0.20 2.42 13.03 -91.76 -1.20 1.23 16 24 N -0.31 -4.50 12.06 29.30 0.35 -4.14 16 25 C -0.19 -2.53 9.41 -39.22 -0.37 -2.90 16 26 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.97 7.66 -51.93 -0.40 0.58 16 29 H 0.18 3.17 3.81 -52.48 -0.20 2.97 16 30 H 0.42 6.34 8.95 -34.48 -0.31 6.03 16 31 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.14 2.30 7.74 -52.48 -0.41 1.90 16 33 H 0.22 1.54 7.12 -52.49 -0.37 1.17 16 34 H 0.22 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.14 1.38 6.82 -52.49 -0.36 1.03 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -33.65 317.14 -7.40 -41.05 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -2.93 Total: 9.82 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -3.48 Total: -20.40 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 1.09 Total: -57.19 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -1.91 Total: -55.11 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.51 Total: 15.05 kcal Atomic # 16 Polarization: 62.46 SS G_CDS: -0.45 Total: 62.01 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.65 -7.40 -41.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192981961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.149 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds