Wall clock time and date at job start Fri Apr 10 2020 18:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00214 * 2 1 4 4 C 1.38665 * 119.98438 * 359.97438 * 3 2 1 5 5 C 1.38836 * 120.00632 * 179.97438 * 4 3 2 6 6 N 1.39664 * 120.01616 * 179.97438 * 5 4 3 7 7 S 1.65602 * 120.00003 * 45.00216 * 6 5 4 8 8 O 1.42100 * 106.40050 * 178.53829 * 7 6 5 9 9 O 1.42101 * 106.40128 * 311.46227 * 7 6 5 10 10 C 1.76199 * 107.21615 * 64.99888 * 7 6 5 11 11 H 1.07998 * 119.99909 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99945 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00479 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 119.99913 * 0.02562 * 12 10 7 15 15 H 1.48503 * 109.47183 * 89.99821 * 14 12 10 16 16 H 1.48504 * 109.47067 * 209.99627 * 14 12 10 17 17 H 1.48497 * 109.47454 * 329.99654 * 14 12 10 18 18 C 1.38860 * 119.96795 * 0.02794 * 5 4 3 19 19 C 1.38713 * 119.97191 * 359.97438 * 18 5 4 20 20 N 1.40207 * 120.00101 * 179.97438 * 19 18 5 21 21 C 1.34725 * 126.83817 * 184.73494 * 20 19 18 22 22 N 1.30852 * 108.02619 * 179.89938 * 21 20 19 23 23 C 1.33261 * 109.84654 * 0.38020 * 22 21 20 24 24 N 1.30752 * 108.99740 * 359.76529 * 23 22 21 25 25 C 1.38650 * 119.98399 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47126 * 59.99798 * 1 2 3 27 27 H 1.08998 * 109.47566 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46947 * 300.00378 * 1 2 3 29 29 H 1.08004 * 119.99652 * 359.73059 * 4 3 2 30 30 H 0.97002 * 119.99805 * 225.00338 * 6 5 4 31 31 H 0.96998 * 120.00883 * 180.02562 * 13 12 10 32 32 H 1.08009 * 120.01227 * 180.02562 * 18 5 4 33 33 H 1.07999 * 125.98732 * 0.04073 * 21 20 19 34 34 H 1.07999 * 125.50132 * 179.74879 * 23 22 21 35 35 H 1.08001 * 119.98712 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2905 2.3736 -0.0005 5 6 1.9204 3.6108 0.0000 6 7 1.1597 4.7821 -0.0011 7 16 -0.1430 4.9243 1.0115 8 8 -0.6762 6.2242 0.7991 9 8 -0.9058 3.7359 0.8533 10 6 0.4745 4.9032 2.6616 11 1 1.5355 4.8096 2.8400 12 6 -0.3968 5.0073 3.7251 13 7 0.0639 4.9921 4.9567 14 14 -2.2320 5.1699 3.4164 15 1 -2.8470 3.8192 3.3655 16 1 -2.8510 5.9546 4.5148 17 1 -2.4569 5.8652 2.1237 18 6 3.3071 3.6832 0.0005 19 6 4.0618 2.5193 0.0010 20 7 5.4620 2.5917 0.0009 21 6 6.3241 1.5602 -0.0876 22 7 7.5394 2.0443 -0.0552 23 6 7.4949 3.3711 0.0611 24 7 6.2451 3.7533 0.0995 25 6 3.4307 1.2829 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2120 2.3167 -0.0054 30 1 1.3943 5.5123 -0.5950 31 1 -0.5490 5.0649 5.7049 32 1 3.7979 4.6454 0.0013 33 1 6.0587 0.5168 -0.1730 34 1 8.3527 4.0250 0.1151 35 1 4.0184 0.3768 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192981961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:09 Heat of formation + Delta-G solvation = -7.137282 kcal Electronic energy + Delta-G solvation = -25103.145572 eV Core-core repulsion = 21230.269253 eV Total energy + Delta-G solvation = -3872.876318 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.35198 -41.31326 -39.06482 -37.88993 -36.73852 -36.60690 -35.25040 -33.97372 -32.46137 -30.76778 -30.12599 -28.65320 -28.02748 -25.14037 -24.11346 -22.50584 -22.31034 -21.23040 -20.23145 -19.51081 -18.90785 -17.88481 -17.44628 -17.35981 -17.24105 -17.00748 -16.74262 -16.57264 -16.05511 -15.92111 -15.52824 -15.08037 -15.03437 -14.73040 -14.25351 -13.80170 -13.63400 -13.51070 -13.35985 -13.10312 -12.89502 -12.77221 -12.66571 -12.42848 -12.25355 -12.12809 -11.80114 -11.37580 -11.36116 -11.18940 -10.98208 -10.84783 -9.44811 -9.28354 -9.00456 -7.60685 -0.43710 -0.20411 0.25888 0.92832 1.02864 1.04688 1.12899 1.18817 1.85400 1.87853 2.19672 2.30319 2.38236 2.52777 3.08766 3.35888 3.45796 3.68533 3.88151 3.92472 4.00394 4.04982 4.24534 4.35156 4.42583 4.46791 4.65398 4.83843 4.90740 4.92955 5.21840 5.22739 5.30848 5.37943 5.42361 5.87292 5.94116 6.01367 6.24811 6.46780 6.93585 8.17494 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.004500 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.621223 B = 6220.430184 C = 7057.079397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.309 6.309 3 C 0.174 3.826 4 C -0.257 4.257 5 C 0.214 3.786 6 N -1.050 6.050 7 S 2.697 3.303 8 O -1.015 7.015 9 O -1.004 7.004 10 C -1.037 5.037 11 H 0.099 0.901 12 C 0.109 3.891 13 N -0.852 5.852 14 Si 0.829 3.171 15 H -0.229 1.229 16 H -0.222 1.222 17 H -0.227 1.227 18 C -0.178 4.178 19 C 0.199 3.801 20 N -0.338 5.338 21 C 0.273 3.727 22 N -0.558 5.558 23 C 0.208 3.792 24 N -0.351 5.351 25 C -0.171 4.171 26 H 0.065 0.935 27 H 0.136 0.864 28 H 0.049 0.951 29 H 0.164 0.836 30 H 0.433 0.567 31 H 0.293 0.707 32 H 0.139 0.861 33 H 0.267 0.733 34 H 0.254 0.746 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 -10.052 -11.099 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.221 6.221 3 C 0.126 3.874 4 C -0.280 4.280 5 C 0.116 3.884 6 N -0.799 5.799 7 S 2.798 3.202 8 O -1.005 7.005 9 O -0.994 6.994 10 C -1.169 5.169 11 H 0.117 0.883 12 C -0.108 4.108 13 N -0.482 5.482 14 Si 0.645 3.355 15 H -0.152 1.152 16 H -0.144 1.144 17 H -0.150 1.150 18 C -0.202 4.202 19 C 0.105 3.895 20 N -0.122 5.122 21 C -0.021 4.021 22 N -0.284 5.284 23 C -0.094 4.094 24 N -0.176 5.176 25 C -0.193 4.193 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.068 0.932 29 H 0.181 0.819 30 H 0.271 0.729 31 H 0.103 0.897 32 H 0.157 0.843 33 H 0.282 0.718 34 H 0.270 0.730 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.023 -9.650 -11.028 15.843 hybrid contribution -0.341 0.927 0.698 1.209 sum 5.682 -8.723 -10.330 14.666 Atomic orbital electron populations 1.23436 0.76281 1.06010 1.02306 1.86010 1.23243 1.24889 1.87965 1.18293 0.91401 0.84226 0.93485 1.22203 1.03558 0.91461 1.10757 1.16862 0.89854 0.85214 0.96424 1.53005 1.48666 1.23131 1.55126 1.00796 0.71825 0.72765 0.74816 1.93476 1.77648 1.41861 1.87531 1.93326 1.69285 1.49241 1.87527 1.30786 1.05624 1.66523 1.14002 0.88325 1.25204 1.02838 0.88530 0.94263 1.70016 1.38797 1.39712 0.99626 0.87438 0.80905 0.83074 0.84096 1.15213 1.14431 1.14955 1.20703 0.91842 0.98923 1.08707 1.16777 0.78325 0.93939 1.00474 1.47653 1.04997 1.06123 1.53412 1.27174 0.83768 0.97751 0.93371 1.70702 1.22363 1.10020 1.25317 1.26890 0.95157 0.91840 0.95518 1.78195 1.04816 1.07164 1.27415 1.19998 0.91851 0.96793 1.10642 0.91631 0.84582 0.93178 0.81878 0.72867 0.89668 0.84306 0.71779 0.73018 0.80213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.81 113.37 1.11 1.42 16 2 O -0.31 -7.82 10.49 -92.37 -0.97 -8.79 16 3 C 0.17 5.00 6.68 22.47 0.15 5.15 16 4 C -0.26 -8.91 8.16 22.52 0.18 -8.72 16 5 C 0.21 7.70 6.21 38.19 0.24 7.94 16 6 N -1.05 -39.43 5.76 -51.45 -0.30 -39.73 16 7 S 2.70 127.93 4.16 -56.49 -0.24 127.70 16 8 O -1.01 -51.67 16.02 -128.00 -2.05 -53.72 16 9 O -1.00 -47.71 13.75 -128.00 -1.76 -49.47 16 10 C -1.04 -57.65 10.22 67.73 0.69 -56.96 16 11 H 0.10 5.81 8.06 -2.91 -0.02 5.79 16 12 C 0.11 6.13 5.47 84.65 0.46 6.60 16 13 N -0.85 -48.88 13.96 21.44 0.30 -48.59 16 14 Si 0.83 39.37 26.54 68.60 1.82 41.19 16 15 H -0.23 -10.26 7.11 99.48 0.71 -9.56 16 16 H -0.22 -9.40 7.11 99.48 0.71 -8.69 16 17 H -0.23 -10.99 5.61 99.48 0.56 -10.43 16 18 C -0.18 -5.86 9.60 22.53 0.22 -5.64 16 19 C 0.20 5.63 6.68 38.05 0.25 5.88 16 20 N -0.34 -8.85 3.82 -191.36 -0.73 -9.58 16 21 C 0.27 5.39 11.97 180.26 2.16 7.55 16 22 N -0.56 -12.53 11.19 -203.73 -2.28 -14.81 16 23 C 0.21 4.64 13.03 180.75 2.35 7.00 16 24 N -0.35 -9.94 12.06 -61.21 -0.74 -10.67 16 25 C -0.17 -4.14 9.41 22.51 0.21 -3.93 16 26 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 27 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.34 7.66 -2.39 -0.02 1.32 16 29 H 0.16 5.97 3.81 -2.91 -0.01 5.96 16 30 H 0.43 13.37 8.95 -96.74 -0.87 12.50 16 31 H 0.29 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.14 4.60 7.74 -2.91 -0.02 4.58 16 33 H 0.27 2.37 7.12 -2.91 -0.02 2.34 16 34 H 0.25 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.18 2.73 6.82 -2.91 -0.02 2.71 16 Total: -1.00 -73.92 317.14 1.25 -72.67 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.16 Total: 27.52 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 8.03 Total: -33.72 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -3.75 Total: -123.37 kcal Atomic # 8 Polarization: -107.20 SS G_CDS: -4.78 Total: -111.98 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.82 Total: 41.19 kcal Atomic # 16 Polarization: 127.93 SS G_CDS: -0.24 Total: 127.70 kcal Total: -73.92 1.25 -72.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192981961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.529 kcal (2) G-P(sol) polarization free energy of solvation -73.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds