Wall clock time and date at job start Fri Apr 10 2020 18:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.32943 * 2 1 4 4 C 1.52671 * 109.38360 * 240.21581 * 2 1 3 5 5 N 1.46039 * 111.05019 * 290.96040 * 4 2 1 6 6 C 1.34799 * 121.21272 * 322.31344 * 5 4 2 7 7 O 1.21595 * 120.41942 * 182.73077 * 6 5 4 8 8 C 1.47574 * 119.15374 * 2.70854 * 6 5 4 9 9 C 1.39480 * 121.09187 * 197.66617 * 8 6 5 10 10 C 1.37729 * 119.68080 * 179.68299 * 9 8 6 11 11 C 1.39243 * 120.09800 * 0.53611 * 10 9 8 12 12 N 1.39047 * 119.85951 * 179.74406 * 11 10 9 13 13 S 1.65596 * 120.00251 * 313.52231 * 12 11 10 14 14 O 1.42099 * 106.40677 * 184.97467 * 13 12 11 15 15 O 1.42103 * 106.40477 * 52.05048 * 13 12 11 16 16 C 1.76203 * 107.21929 * 298.51541 * 13 12 11 17 17 H 1.08005 * 119.99674 * 11.47006 * 16 13 12 18 18 C 1.37869 * 120.00408 * 191.47619 * 16 13 12 19 19 N 1.31516 * 120.00204 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 120.00450 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46930 * 59.99557 * 20 18 16 22 22 H 1.48494 * 109.47581 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46856 * 300.00034 * 20 18 16 24 24 C 1.39280 * 120.27322 * 359.47157 * 11 10 9 25 25 C 1.37432 * 119.88642 * 0.27551 * 24 11 10 26 26 H 1.08997 * 109.47516 * 300.21852 * 1 2 3 27 27 H 1.09007 * 109.47067 * 60.22295 * 1 2 3 28 28 H 1.08997 * 109.47344 * 180.21598 * 1 2 3 29 29 H 1.09001 * 109.46962 * 179.78199 * 3 2 1 30 30 H 1.09001 * 109.46802 * 299.77919 * 3 2 1 31 31 H 1.08998 * 109.47468 * 59.77951 * 3 2 1 32 32 H 1.08997 * 109.14694 * 170.56542 * 4 2 1 33 33 H 1.08994 * 109.12727 * 51.34337 * 4 2 1 34 34 H 0.96996 * 119.39243 * 142.29286 * 5 4 2 35 35 H 1.07998 * 120.15993 * 359.97078 * 9 8 6 36 36 H 1.07996 * 119.94958 * 180.28662 * 10 9 8 37 37 H 0.96995 * 120.00085 * 133.51966 * 12 11 10 38 38 H 0.96992 * 120.00776 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.06087 * 180.29261 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0364 1.4437 0.0000 4 6 2.0367 -0.7154 -1.2499 5 7 1.7509 -2.1462 -1.1876 6 6 1.8418 -2.8268 -0.0276 7 8 1.6489 -4.0271 -0.0013 8 6 2.1791 -2.0968 1.2097 9 6 2.6390 -2.7707 2.3410 10 6 2.9515 -2.0596 3.4784 11 6 2.7979 -0.6758 3.5011 12 7 3.1098 0.0365 4.6537 13 16 2.5706 -0.4944 6.1267 14 8 2.9485 0.4958 7.0732 15 8 2.9606 -1.8570 6.2295 16 6 0.8094 -0.4839 6.0721 17 1 0.2992 -0.3465 5.1301 18 6 0.0827 -0.6511 7.2317 19 7 0.7039 -0.8190 8.3787 20 14 -1.7844 -0.6394 7.1739 21 1 -2.2592 -1.7355 6.2917 22 1 -2.3233 -0.8380 8.5433 23 1 -2.2548 0.6642 6.6406 24 6 2.3386 -0.0018 2.3721 25 6 2.0301 -0.7055 1.2326 26 1 -0.3634 0.5172 0.8880 27 1 -0.3633 0.5104 -0.8920 28 1 -0.3634 -1.0276 0.0039 29 1 3.1264 1.4464 0.0039 30 1 1.6750 1.9555 -0.8920 31 1 1.6686 1.9578 0.8880 32 1 3.1135 -0.5690 -1.3339 33 1 1.5485 -0.2909 -2.1271 34 1 1.4905 -2.6153 -1.9957 35 1 2.7539 -3.8444 2.3237 36 1 3.3123 -2.5765 4.3553 37 1 3.6434 0.8444 4.5951 38 1 0.1928 -0.9370 9.1945 39 1 2.2252 1.0721 2.3919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:14 Heat of formation + Delta-G solvation = -107.729807 kcal Electronic energy + Delta-G solvation = -25905.559705 eV Core-core repulsion = 22131.861711 eV Total energy + Delta-G solvation = -3773.697994 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.93918 -38.42039 -37.34750 -35.41621 -34.32174 -34.16407 -33.60327 -33.15629 -30.12873 -29.07863 -27.43891 -26.36519 -26.22946 -23.35888 -23.18895 -20.55512 -19.37390 -18.87682 -17.72158 -17.59470 -17.02297 -16.52200 -16.23809 -15.53060 -15.07031 -14.76155 -14.64640 -14.26456 -14.05747 -13.95233 -13.76578 -13.63587 -13.21085 -12.67718 -12.65898 -12.23094 -12.13859 -12.07982 -11.74489 -11.44858 -11.40006 -11.24741 -11.20722 -10.90345 -10.71953 -10.67222 -10.48337 -10.30823 -9.94382 -9.77678 -9.30950 -9.18888 -8.97783 -8.65509 -7.95914 -6.78055 -5.42265 1.01324 1.58695 2.06702 2.94566 3.05132 3.09857 3.15701 3.19352 3.97830 4.00123 4.27062 4.37531 4.49131 4.56498 4.63515 4.82028 4.93795 5.12086 5.15580 5.35095 5.45383 5.45903 5.58482 5.61553 5.63516 5.68860 5.72910 5.85763 5.95737 6.10606 6.19115 6.28021 6.37270 6.51767 6.57483 6.79000 6.89035 7.11083 7.15252 7.24325 7.65716 7.87750 8.22797 8.79917 10.15493 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.004383 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.876178 B = 6387.152315 C = 6619.290183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.141 4.141 4 C 0.126 3.874 5 N -0.729 5.729 6 C 0.572 3.428 7 O -0.541 6.541 8 C -0.171 4.171 9 C -0.029 4.029 10 C -0.162 4.162 11 C 0.214 3.786 12 N -1.074 6.074 13 S 2.700 3.300 14 O -0.987 6.987 15 O -0.999 6.999 16 C -1.012 5.012 17 H 0.103 0.897 18 C 0.134 3.866 19 N -0.840 5.840 20 Si 0.921 3.079 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.264 1.264 24 C -0.152 4.152 25 C -0.026 4.026 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.401 0.599 35 H 0.137 0.863 36 H 0.166 0.834 37 H 0.414 0.586 38 H 0.293 0.707 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 4.874 -18.658 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 C -0.199 4.199 4 C 0.001 3.999 5 N -0.382 5.382 6 C 0.362 3.638 7 O -0.419 6.419 8 C -0.175 4.175 9 C -0.049 4.049 10 C -0.183 4.183 11 C 0.115 3.885 12 N -0.816 5.816 13 S 2.802 3.198 14 O -0.977 6.977 15 O -0.989 6.989 16 C -1.147 5.147 17 H 0.122 0.878 18 C -0.085 4.085 19 N -0.470 5.470 20 Si 0.744 3.256 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.188 1.188 24 C -0.173 4.173 25 C -0.028 4.028 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.237 0.763 35 H 0.155 0.845 36 H 0.183 0.817 37 H 0.248 0.752 38 H 0.103 0.897 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.960 3.958 -17.447 17.998 hybrid contribution -1.468 0.485 -0.553 1.642 sum 0.492 4.443 -18.000 18.547 Atomic orbital electron populations 1.21888 0.92651 1.02622 1.02480 1.19753 0.96837 0.95722 0.92032 1.21901 1.01619 0.93536 1.02796 1.21366 1.00687 0.80075 0.97745 1.45646 1.71789 1.09908 1.10837 1.18245 0.75599 0.86206 0.83800 1.90803 1.50449 1.14327 1.86360 1.19550 1.09762 0.93125 0.95046 1.20988 0.93340 1.00189 0.90383 1.22039 1.02605 0.93230 1.00444 1.17623 0.93061 0.91023 0.86841 1.54081 1.66189 1.38157 1.23222 1.01075 0.76745 0.73107 0.68903 1.93399 1.85709 1.61316 1.57321 1.93335 1.85253 1.36282 1.84010 1.30335 1.16812 1.65973 1.01540 0.87828 1.24729 1.01917 0.88575 0.93247 1.69898 1.38910 1.38500 0.99649 0.86183 0.81153 0.79908 0.78317 1.18654 1.19987 1.18802 1.20930 1.03181 1.00542 0.92686 1.19559 0.96649 0.92090 0.94468 0.91565 0.92002 0.92330 0.91796 0.91907 0.91152 0.91515 0.89619 0.76314 0.84492 0.81660 0.75157 0.89686 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.34 37.16 0.31 -1.04 16 2 C -0.04 -0.41 0.72 -155.89 -0.11 -0.52 16 3 C -0.14 -1.05 7.64 37.16 0.28 -0.76 16 4 C 0.13 1.00 5.68 -4.46 -0.03 0.97 16 5 N -0.73 -7.59 5.29 -61.82 -0.33 -7.92 16 6 C 0.57 8.54 7.54 -12.44 -0.09 8.44 16 7 O -0.54 -9.89 17.44 5.28 0.09 -9.80 16 8 C -0.17 -2.65 5.78 -104.99 -0.61 -3.26 16 9 C -0.03 -0.50 9.63 -39.30 -0.38 -0.88 16 10 C -0.16 -3.04 9.20 -39.39 -0.36 -3.40 16 11 C 0.21 3.81 6.12 -83.83 -0.51 3.30 16 12 N -1.07 -20.32 5.73 32.42 0.19 -20.13 16 13 S 2.70 68.31 5.05 -107.50 -0.54 67.77 16 14 O -0.99 -27.68 17.57 -57.17 -1.00 -28.69 16 15 O -1.00 -27.23 15.12 -57.17 -0.86 -28.10 16 16 C -1.01 -27.08 9.60 30.60 0.29 -26.79 16 17 H 0.10 2.58 7.81 -52.48 -0.41 2.17 16 18 C 0.13 3.66 5.45 -17.82 -0.10 3.56 16 19 N -0.84 -24.06 12.84 55.43 0.71 -23.35 16 20 Si 0.92 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 24 C -0.15 -2.22 9.07 -39.49 -0.36 -2.58 16 25 C -0.03 -0.35 4.76 -104.34 -0.50 -0.85 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.67 7.72 -51.93 -0.40 0.27 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.56 6.62 -51.93 -0.34 0.21 16 32 H 0.07 0.50 8.11 -51.93 -0.42 0.07 16 33 H 0.09 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.40 3.40 8.92 -40.82 -0.36 3.03 16 35 H 0.14 2.21 7.84 -52.49 -0.41 1.80 16 36 H 0.17 3.40 5.69 -52.49 -0.30 3.10 16 37 H 0.41 6.39 8.95 -34.46 -0.31 6.08 16 38 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.13 1.64 6.16 -52.48 -0.32 1.31 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -35.58 336.25 -8.39 -43.97 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.53 Total: 9.67 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -2.16 Total: -23.81 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.57 Total: -51.40 kcal Atomic # 8 Polarization: -64.81 SS G_CDS: -1.78 Total: -66.59 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 68.31 SS G_CDS: -0.54 Total: 67.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.58 -8.39 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.762 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds