Wall clock time and date at job start Fri Apr 10 2020 18:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.32943 * 2 1 4 4 C 1.52671 * 109.38360 * 240.21581 * 2 1 3 5 5 N 1.46039 * 111.05019 * 290.96040 * 4 2 1 6 6 C 1.34799 * 121.21272 * 322.31344 * 5 4 2 7 7 O 1.21595 * 120.41942 * 182.73077 * 6 5 4 8 8 C 1.47574 * 119.15374 * 2.70854 * 6 5 4 9 9 C 1.39480 * 121.09187 * 197.66617 * 8 6 5 10 10 C 1.37729 * 119.68080 * 179.68299 * 9 8 6 11 11 C 1.39243 * 120.09800 * 0.53611 * 10 9 8 12 12 N 1.39047 * 119.85951 * 179.74406 * 11 10 9 13 13 S 1.65596 * 120.00251 * 313.52231 * 12 11 10 14 14 O 1.42099 * 106.40677 * 184.97467 * 13 12 11 15 15 O 1.42103 * 106.40477 * 52.05048 * 13 12 11 16 16 C 1.76203 * 107.21929 * 298.51541 * 13 12 11 17 17 H 1.08005 * 119.99674 * 11.47006 * 16 13 12 18 18 C 1.37869 * 120.00408 * 191.47619 * 16 13 12 19 19 N 1.31516 * 120.00204 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 120.00450 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46930 * 59.99557 * 20 18 16 22 22 H 1.48494 * 109.47581 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46856 * 300.00034 * 20 18 16 24 24 C 1.39280 * 120.27322 * 359.47157 * 11 10 9 25 25 C 1.37432 * 119.88642 * 0.27551 * 24 11 10 26 26 H 1.08997 * 109.47516 * 300.21852 * 1 2 3 27 27 H 1.09007 * 109.47067 * 60.22295 * 1 2 3 28 28 H 1.08997 * 109.47344 * 180.21598 * 1 2 3 29 29 H 1.09001 * 109.46962 * 179.78199 * 3 2 1 30 30 H 1.09001 * 109.46802 * 299.77919 * 3 2 1 31 31 H 1.08998 * 109.47468 * 59.77951 * 3 2 1 32 32 H 1.08997 * 109.14694 * 170.56542 * 4 2 1 33 33 H 1.08994 * 109.12727 * 51.34337 * 4 2 1 34 34 H 0.96996 * 119.39243 * 142.29286 * 5 4 2 35 35 H 1.07998 * 120.15993 * 359.97078 * 9 8 6 36 36 H 1.07996 * 119.94958 * 180.28662 * 10 9 8 37 37 H 0.96995 * 120.00085 * 133.51966 * 12 11 10 38 38 H 0.96992 * 120.00776 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.06087 * 180.29261 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0364 1.4437 0.0000 4 6 2.0367 -0.7154 -1.2499 5 7 1.7509 -2.1462 -1.1876 6 6 1.8418 -2.8268 -0.0276 7 8 1.6489 -4.0271 -0.0013 8 6 2.1791 -2.0968 1.2097 9 6 2.6390 -2.7707 2.3410 10 6 2.9515 -2.0596 3.4784 11 6 2.7979 -0.6758 3.5011 12 7 3.1098 0.0365 4.6537 13 16 2.5706 -0.4944 6.1267 14 8 2.9485 0.4958 7.0732 15 8 2.9606 -1.8570 6.2295 16 6 0.8094 -0.4839 6.0721 17 1 0.2992 -0.3465 5.1301 18 6 0.0827 -0.6511 7.2317 19 7 0.7039 -0.8190 8.3787 20 14 -1.7844 -0.6394 7.1739 21 1 -2.2592 -1.7355 6.2917 22 1 -2.3233 -0.8380 8.5433 23 1 -2.2548 0.6642 6.6406 24 6 2.3386 -0.0018 2.3721 25 6 2.0301 -0.7055 1.2326 26 1 -0.3634 0.5172 0.8880 27 1 -0.3633 0.5104 -0.8920 28 1 -0.3634 -1.0276 0.0039 29 1 3.1264 1.4464 0.0039 30 1 1.6750 1.9555 -0.8920 31 1 1.6686 1.9578 0.8880 32 1 3.1135 -0.5690 -1.3339 33 1 1.5485 -0.2909 -2.1271 34 1 1.4905 -2.6153 -1.9957 35 1 2.7539 -3.8444 2.3237 36 1 3.3123 -2.5765 4.3553 37 1 3.6434 0.8444 4.5951 38 1 0.1928 -0.9370 9.1945 39 1 2.2252 1.0721 2.3919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:13 Heat of formation + Delta-G solvation = -136.430967 kcal Electronic energy + Delta-G solvation = -25906.804281 eV Core-core repulsion = 22131.861711 eV Total energy + Delta-G solvation = -3774.942570 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02113 -39.69167 -38.40868 -37.48436 -36.28882 -35.70590 -35.18557 -34.59626 -31.30490 -30.39872 -28.31861 -28.11923 -27.08630 -24.63252 -24.35362 -21.65378 -21.20287 -20.25299 -19.22178 -18.96531 -18.36028 -18.01404 -17.62671 -17.03820 -16.58068 -16.10031 -15.89863 -15.76863 -15.51670 -15.11638 -15.07898 -14.74495 -14.20394 -14.04126 -13.99222 -13.73925 -13.42309 -13.05388 -13.02599 -12.98883 -12.70294 -12.64143 -12.61025 -12.36105 -12.30120 -12.17092 -12.02373 -11.84252 -11.33942 -11.27307 -11.02221 -10.98618 -10.11615 -9.88293 -9.36195 -8.79165 -7.54036 -0.33289 0.20650 0.31858 1.30672 1.33903 1.46192 1.72313 2.15851 2.28126 2.52004 2.71223 2.76564 3.39791 3.52816 3.57184 3.69153 3.87285 4.06569 4.11726 4.23917 4.29681 4.36677 4.53843 4.65061 4.79780 4.82859 4.88715 4.91934 4.94246 5.07884 5.16680 5.20412 5.23669 5.29539 5.37679 5.45168 5.52493 5.75534 5.84055 5.95849 6.13778 6.24121 6.73014 7.18168 8.15908 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.004383 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.876178 B = 6387.152315 C = 6619.290183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C -0.140 4.140 4 C 0.119 3.881 5 N -0.709 5.709 6 C 0.568 3.432 7 O -0.585 6.585 8 C -0.176 4.176 9 C -0.042 4.042 10 C -0.186 4.186 11 C 0.189 3.811 12 N -1.058 6.058 13 S 2.711 3.289 14 O -1.022 7.022 15 O -1.031 7.031 16 C -1.032 5.032 17 H 0.116 0.884 18 C 0.075 3.925 19 N -0.886 5.886 20 Si 0.984 3.016 21 H -0.258 1.258 22 H -0.261 1.261 23 H -0.245 1.245 24 C -0.140 4.140 25 C -0.015 4.015 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.414 0.586 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.430 0.570 38 H 0.300 0.700 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 7.259 -22.266 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 C -0.197 4.197 4 C -0.004 4.004 5 N -0.361 5.361 6 C 0.357 3.643 7 O -0.467 6.467 8 C -0.180 4.180 9 C -0.061 4.061 10 C -0.208 4.208 11 C 0.091 3.909 12 N -0.806 5.806 13 S 2.813 3.187 14 O -1.012 7.012 15 O -1.021 7.021 16 C -1.166 5.166 17 H 0.134 0.866 18 C -0.139 4.139 19 N -0.517 5.517 20 Si 0.802 3.198 21 H -0.182 1.182 22 H -0.185 1.185 23 H -0.168 1.168 24 C -0.162 4.162 25 C -0.017 4.017 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.149 0.851 34 H 0.252 0.748 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.268 0.732 38 H 0.111 0.889 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.338 6.389 -21.093 22.041 hybrid contribution -0.891 -0.253 0.404 1.010 sum -0.553 6.135 -20.689 21.587 Atomic orbital electron populations 1.21914 0.92391 1.01575 1.03754 1.19940 0.96873 0.97076 0.90436 1.21928 1.02048 0.91566 1.04171 1.21728 1.02170 0.78004 0.98482 1.45575 1.69654 1.11127 1.09726 1.18199 0.75629 0.85703 0.84773 1.90782 1.52725 1.16098 1.87087 1.19802 1.08919 0.94358 0.94913 1.20984 0.94175 1.00199 0.90789 1.21858 1.04526 0.94126 1.00242 1.17810 0.95002 0.90703 0.87364 1.53268 1.66492 1.38868 1.22005 1.00401 0.76520 0.72142 0.69603 1.93342 1.86090 1.62001 1.59782 1.93304 1.85565 1.38034 1.85185 1.30680 1.17808 1.65837 1.02290 0.86574 1.25917 1.07548 0.87712 0.92707 1.69984 1.41191 1.39836 1.00676 0.85243 0.74507 0.80790 0.79238 1.18178 1.18466 1.16817 1.21216 1.01481 1.01979 0.91481 1.20084 0.94419 0.91286 0.95872 0.92597 0.88562 0.94489 0.91228 0.88867 0.91589 0.90130 0.85111 0.74816 0.84927 0.84531 0.73165 0.88950 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.34 71.98 0.60 -1.53 16 2 C -0.04 -0.63 0.72 -53.08 -0.04 -0.67 16 3 C -0.14 -1.33 7.64 71.98 0.55 -0.78 16 4 C 0.12 1.28 5.68 86.36 0.49 1.77 16 5 N -0.71 -12.51 5.29 -467.75 -2.48 -14.99 16 6 C 0.57 16.38 7.54 86.70 0.65 17.03 16 7 O -0.59 -21.57 17.44 -4.01 -0.07 -21.64 16 8 C -0.18 -5.38 5.78 -20.10 -0.12 -5.49 16 9 C -0.04 -1.49 9.63 22.45 0.22 -1.28 16 10 C -0.19 -7.37 9.20 22.39 0.21 -7.16 16 11 C 0.19 6.82 6.12 38.49 0.24 7.05 16 12 N -1.06 -40.73 5.73 -51.33 -0.29 -41.02 16 13 S 2.71 142.24 5.05 -56.49 -0.29 141.95 16 14 O -1.02 -59.31 17.57 -128.00 -2.25 -61.56 16 15 O -1.03 -59.49 15.12 -128.00 -1.94 -61.42 16 16 C -1.03 -56.07 9.60 67.73 0.65 -55.42 16 17 H 0.12 5.79 7.81 -2.91 -0.02 5.77 16 18 C 0.08 4.13 5.45 84.65 0.46 4.59 16 19 N -0.89 -52.01 12.84 21.44 0.28 -51.73 16 20 Si 0.98 41.08 29.54 68.60 2.03 43.10 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 23 H -0.24 -9.41 7.11 99.48 0.71 -8.70 16 24 C -0.14 -3.85 9.07 22.33 0.20 -3.64 16 25 C -0.01 -0.37 4.76 -19.68 -0.09 -0.47 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.04 0.73 7.72 -2.39 -0.02 0.71 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.72 6.62 -2.39 -0.02 0.70 16 32 H 0.08 0.76 8.11 -2.39 -0.02 0.74 16 33 H 0.13 0.39 8.12 -2.39 -0.02 0.37 16 34 H 0.41 5.61 8.92 -92.71 -0.83 4.78 16 35 H 0.13 4.67 7.84 -2.91 -0.02 4.65 16 36 H 0.14 6.15 5.69 -2.91 -0.02 6.14 16 37 H 0.43 13.26 8.95 -96.76 -0.87 12.40 16 38 H 0.30 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.17 3.47 6.16 -2.91 -0.02 3.45 16 Total: -1.00 -82.10 336.25 -1.56 -83.66 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.57 Total: 29.64 kcal Atomic # 6 Polarization: -50.02 SS G_CDS: 4.02 Total: -46.00 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -2.49 Total: -107.74 kcal Atomic # 8 Polarization: -140.36 SS G_CDS: -4.26 Total: -144.61 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 142.24 SS G_CDS: -0.29 Total: 141.95 kcal Total: -82.10 -1.56 -83.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.768 kcal (2) G-P(sol) polarization free energy of solvation -82.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds