Wall clock time and date at job start Fri Apr 10 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.09189 * 2 1 4 4 C 1.50188 * 109.24165 * 241.03317 * 2 1 3 5 5 C 1.38733 * 118.65030 * 38.85887 * 4 2 1 6 6 C 1.38081 * 120.49411 * 180.40865 * 5 4 2 7 7 C 1.38131 * 119.90583 * 359.97438 * 6 5 4 8 8 C 1.38697 * 119.79716 * 359.97438 * 7 6 5 9 9 N 1.39666 * 119.89195 * 180.02562 * 8 7 6 10 10 S 1.65602 * 119.99993 * 326.18185 * 9 8 7 11 11 O 1.42109 * 106.39988 * 181.33717 * 10 9 8 12 12 O 1.42101 * 106.40279 * 314.25858 * 10 9 8 13 13 C 1.76200 * 107.21980 * 67.80294 * 10 9 8 14 14 H 1.08003 * 119.99979 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00120 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00091 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99869 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46830 * 90.00158 * 17 15 13 19 19 H 1.48497 * 109.47098 * 209.99965 * 17 15 13 20 20 H 1.48496 * 109.47334 * 330.00219 * 17 15 13 21 21 C 1.37691 * 121.42145 * 219.23806 * 4 2 1 22 22 C 1.50257 * 121.68980 * 359.56848 * 21 4 2 23 23 N 1.45283 * 112.00298 * 21.55249 * 22 21 4 24 24 C 1.33449 * 123.52595 * 337.99464 * 23 22 21 25 25 O 1.21288 * 118.58622 * 180.57738 * 24 23 22 26 26 H 1.09006 * 109.47032 * 300.81167 * 1 2 3 27 27 H 1.08999 * 109.47454 * 60.81407 * 1 2 3 28 28 H 1.09006 * 109.47287 * 180.81631 * 1 2 3 29 29 H 1.08999 * 109.46917 * 179.18163 * 3 2 1 30 30 H 1.08995 * 109.47453 * 299.18639 * 3 2 1 31 31 H 1.09009 * 109.46854 * 59.18377 * 3 2 1 32 32 H 1.08000 * 119.75244 * 0.40192 * 5 4 2 33 33 H 1.08000 * 120.04555 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.10071 * 179.97438 * 7 6 5 35 35 H 0.97004 * 120.00180 * 146.17838 * 9 8 7 36 36 H 0.96994 * 119.99989 * 179.97438 * 16 15 13 37 37 H 1.09005 * 108.97910 * 260.90431 * 22 21 4 38 38 H 1.09002 * 108.91069 * 142.15856 * 22 21 4 39 39 H 0.97001 * 118.23635 * 157.96563 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4458 0.0000 4 6 2.0250 -0.6867 -1.2406 5 6 1.3491 -0.4739 -2.4333 6 6 1.7662 -1.0927 -3.5951 7 6 2.8645 -1.9301 -3.5733 8 6 3.5439 -2.1449 -2.3833 9 7 4.6550 -2.9908 -2.3591 10 16 4.7095 -4.3148 -3.3524 11 8 5.9349 -4.9772 -3.0712 12 8 3.4417 -4.9480 -3.2469 13 6 4.8332 -3.7211 -5.0067 14 1 4.8588 -2.6586 -5.1986 15 6 4.8973 -4.6129 -6.0562 16 7 4.8666 -5.9068 -5.8225 17 14 5.0277 -3.9834 -7.8101 18 1 6.4589 -3.8320 -8.1765 19 1 4.3803 -4.9504 -8.7325 20 1 4.3479 -2.6674 -7.9156 21 6 3.1208 -1.5200 -1.2112 22 6 3.8825 -1.7777 0.0581 23 7 3.0837 -1.4974 1.2388 24 6 2.0213 -0.6900 1.2352 25 8 1.4249 -0.5109 2.2761 26 1 -0.3633 0.5264 0.8827 27 1 -0.3634 0.5011 -0.8972 28 1 -0.3634 -1.0276 0.0146 29 1 3.1203 1.4531 0.0147 30 1 1.6758 1.9531 -0.8971 31 1 1.6517 1.9614 0.8827 32 1 0.4902 0.1806 -2.4532 33 1 1.2344 -0.9222 -4.5195 34 1 3.1933 -2.4160 -4.4801 35 1 5.3948 -2.8028 -1.7606 36 1 4.9113 -6.5341 -6.5609 37 1 4.7707 -1.1460 0.0729 38 1 4.1911 -2.8230 0.0788 39 1 3.3360 -1.9203 2.0745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:24 Heat of formation + Delta-G solvation = -104.870311 kcal Electronic energy + Delta-G solvation = -26071.865439 eV Core-core repulsion = 22298.291442 eV Total energy + Delta-G solvation = -3773.573997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15475 -38.90305 -36.06999 -35.59428 -35.29441 -34.21697 -33.75738 -33.22416 -30.53720 -28.53539 -27.36776 -26.65142 -26.33021 -24.04913 -22.46671 -21.05363 -19.37388 -18.39442 -18.08877 -17.70353 -17.02550 -16.54694 -16.02701 -15.67207 -15.07365 -15.00719 -14.57895 -14.25602 -14.05823 -13.98403 -13.65736 -13.59822 -13.23523 -13.05610 -12.38946 -12.32930 -12.25118 -12.07816 -11.87793 -11.49436 -11.35912 -11.32704 -11.14464 -10.98906 -10.70914 -10.68165 -10.53360 -10.42809 -10.22626 -9.75493 -9.38733 -9.29648 -8.99551 -8.47400 -7.81151 -6.87289 -5.52062 1.45599 1.58197 1.99185 2.56590 2.97585 3.05298 3.10246 3.17465 3.89318 3.93193 4.31937 4.35704 4.46222 4.48729 4.61870 4.90914 4.96103 5.15618 5.29899 5.38153 5.47120 5.47824 5.51625 5.57346 5.68108 5.70931 5.81322 5.89939 5.95676 6.04675 6.14561 6.25849 6.41946 6.49585 6.68511 6.74658 6.82460 7.09514 7.17445 7.19408 7.60211 7.74933 8.12437 8.69902 10.07004 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.004192 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.666321 B = 6678.377340 C = 7457.421880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 C -0.130 4.130 4 C -0.052 4.052 5 C -0.144 4.144 6 C -0.079 4.079 7 C -0.166 4.166 8 C 0.210 3.790 9 N -1.071 6.071 10 S 2.699 3.301 11 O -0.996 6.996 12 O -0.987 6.987 13 C -1.022 5.022 14 H 0.111 0.889 15 C 0.134 3.866 16 N -0.840 5.840 17 Si 0.923 3.077 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.260 1.260 21 C -0.141 4.141 22 C 0.153 3.847 23 N -0.713 5.713 24 C 0.533 3.467 25 O -0.552 6.552 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.166 0.834 35 H 0.411 0.589 36 H 0.294 0.706 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 12.776 6.125 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.037 4.037 3 C -0.187 4.187 4 C -0.053 4.053 5 C -0.163 4.163 6 C -0.097 4.097 7 C -0.186 4.186 8 C 0.110 3.890 9 N -0.812 5.812 10 S 2.800 3.200 11 O -0.986 6.986 12 O -0.977 6.977 13 C -1.155 5.155 14 H 0.129 0.871 15 C -0.085 4.085 16 N -0.468 5.468 17 Si 0.746 3.254 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.146 4.146 22 C 0.029 3.971 23 N -0.364 5.364 24 C 0.319 3.681 25 O -0.430 6.430 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.183 0.817 35 H 0.245 0.755 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.398 11.752 6.622 14.189 hybrid contribution 0.803 0.406 -0.889 1.265 sum -3.595 12.158 5.733 13.915 Atomic orbital electron populations 1.21831 0.90996 1.03088 1.02838 1.19282 0.98074 0.96333 0.90038 1.21796 1.01480 0.92336 1.03129 1.18935 0.95007 0.97084 0.94303 1.20946 1.00918 1.02526 0.91956 1.20936 0.95344 0.95377 0.98080 1.21972 0.97821 1.00497 0.98342 1.17150 0.88189 0.91079 0.92544 1.54376 1.24497 1.44559 1.57767 1.01160 0.73211 0.70644 0.75009 1.93404 1.47031 1.71578 1.86589 1.93421 1.44116 1.72370 1.87767 1.30519 1.67432 1.03390 1.14207 0.87094 1.24755 0.88391 0.93614 1.01735 1.69879 1.38938 1.02004 1.36015 0.86117 0.79417 0.79723 0.80145 1.19086 1.19858 1.18374 1.19172 0.98865 1.03070 0.93479 1.19906 0.92827 1.02139 0.82227 1.45235 1.30367 1.48053 1.12775 1.19805 0.79518 0.78367 0.90364 1.90718 1.56015 1.63318 1.32962 0.91070 0.91083 0.92050 0.92193 0.90854 0.91480 0.85748 0.85320 0.81732 0.75550 0.89572 0.90461 0.89207 0.76075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 7.61 37.16 0.28 -1.16 16 2 C -0.03 -0.42 0.78 -157.51 -0.12 -0.54 16 3 C -0.13 -1.31 8.33 37.16 0.31 -1.00 16 4 C -0.05 -0.71 4.70 -104.89 -0.49 -1.21 16 5 C -0.14 -1.86 9.02 -39.46 -0.36 -2.22 16 6 C -0.08 -1.14 10.04 -39.68 -0.40 -1.54 16 7 C -0.17 -2.95 8.96 -39.45 -0.35 -3.31 16 8 C 0.21 3.66 6.15 -83.68 -0.51 3.15 16 9 N -1.07 -19.70 5.20 32.47 0.17 -19.54 16 10 S 2.70 66.71 4.64 -107.50 -0.50 66.21 16 11 O -1.00 -27.29 18.02 -57.17 -1.03 -28.32 16 12 O -0.99 -27.33 17.45 -57.17 -1.00 -28.33 16 13 C -1.02 -25.62 7.59 30.60 0.23 -25.39 16 14 H 0.11 2.49 6.84 -52.48 -0.36 2.13 16 15 C 0.13 3.47 5.46 -17.82 -0.10 3.37 16 16 N -0.84 -23.22 13.19 55.43 0.73 -22.49 16 17 Si 0.92 19.06 29.54 -169.99 -5.02 14.04 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 C -0.14 -2.11 5.82 -104.60 -0.61 -2.72 16 22 C 0.15 1.88 6.23 -6.06 -0.04 1.84 16 23 N -0.71 -8.76 5.45 -63.20 -0.34 -9.11 16 24 C 0.53 7.47 6.61 -12.02 -0.08 7.39 16 25 O -0.55 -9.11 16.92 5.55 0.09 -9.02 16 26 H 0.07 0.79 7.78 -51.93 -0.40 0.38 16 27 H 0.07 0.63 6.32 -51.93 -0.33 0.30 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.12 1.24 6.25 -52.49 -0.33 0.92 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.17 3.24 4.43 -52.49 -0.23 3.01 16 35 H 0.41 6.11 7.97 -34.47 -0.27 5.84 16 36 H 0.29 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.07 7.40 -51.93 -0.38 0.69 16 39 H 0.40 4.23 8.82 -40.82 -0.36 3.87 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -34.64 331.92 -8.48 -43.11 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.34 Total: 11.74 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -2.24 Total: -23.31 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.56 Total: -51.13 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -1.93 Total: -65.66 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 66.71 SS G_CDS: -0.50 Total: 66.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.64 -8.48 -43.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.756 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds