Wall clock time and date at job start Fri Apr 10 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.09189 * 2 1 4 4 C 1.50188 * 109.24165 * 241.03317 * 2 1 3 5 5 C 1.38733 * 118.65030 * 38.85887 * 4 2 1 6 6 C 1.38081 * 120.49411 * 180.40865 * 5 4 2 7 7 C 1.38131 * 119.90583 * 359.97438 * 6 5 4 8 8 C 1.38697 * 119.79716 * 359.97438 * 7 6 5 9 9 N 1.39666 * 119.89195 * 180.02562 * 8 7 6 10 10 S 1.65602 * 119.99993 * 326.18185 * 9 8 7 11 11 O 1.42109 * 106.39988 * 181.33717 * 10 9 8 12 12 O 1.42101 * 106.40279 * 314.25858 * 10 9 8 13 13 C 1.76200 * 107.21980 * 67.80294 * 10 9 8 14 14 H 1.08003 * 119.99979 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00120 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00091 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99869 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46830 * 90.00158 * 17 15 13 19 19 H 1.48497 * 109.47098 * 209.99965 * 17 15 13 20 20 H 1.48496 * 109.47334 * 330.00219 * 17 15 13 21 21 C 1.37691 * 121.42145 * 219.23806 * 4 2 1 22 22 C 1.50257 * 121.68980 * 359.56848 * 21 4 2 23 23 N 1.45283 * 112.00298 * 21.55249 * 22 21 4 24 24 C 1.33449 * 123.52595 * 337.99464 * 23 22 21 25 25 O 1.21288 * 118.58622 * 180.57738 * 24 23 22 26 26 H 1.09006 * 109.47032 * 300.81167 * 1 2 3 27 27 H 1.08999 * 109.47454 * 60.81407 * 1 2 3 28 28 H 1.09006 * 109.47287 * 180.81631 * 1 2 3 29 29 H 1.08999 * 109.46917 * 179.18163 * 3 2 1 30 30 H 1.08995 * 109.47453 * 299.18639 * 3 2 1 31 31 H 1.09009 * 109.46854 * 59.18377 * 3 2 1 32 32 H 1.08000 * 119.75244 * 0.40192 * 5 4 2 33 33 H 1.08000 * 120.04555 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.10071 * 179.97438 * 7 6 5 35 35 H 0.97004 * 120.00180 * 146.17838 * 9 8 7 36 36 H 0.96994 * 119.99989 * 179.97438 * 16 15 13 37 37 H 1.09005 * 108.97910 * 260.90431 * 22 21 4 38 38 H 1.09002 * 108.91069 * 142.15856 * 22 21 4 39 39 H 0.97001 * 118.23635 * 157.96563 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4458 0.0000 4 6 2.0250 -0.6867 -1.2406 5 6 1.3491 -0.4739 -2.4333 6 6 1.7662 -1.0927 -3.5951 7 6 2.8645 -1.9301 -3.5733 8 6 3.5439 -2.1449 -2.3833 9 7 4.6550 -2.9908 -2.3591 10 16 4.7095 -4.3148 -3.3524 11 8 5.9349 -4.9772 -3.0712 12 8 3.4417 -4.9480 -3.2469 13 6 4.8332 -3.7211 -5.0067 14 1 4.8588 -2.6586 -5.1986 15 6 4.8973 -4.6129 -6.0562 16 7 4.8666 -5.9068 -5.8225 17 14 5.0277 -3.9834 -7.8101 18 1 6.4589 -3.8320 -8.1765 19 1 4.3803 -4.9504 -8.7325 20 1 4.3479 -2.6674 -7.9156 21 6 3.1208 -1.5200 -1.2112 22 6 3.8825 -1.7777 0.0581 23 7 3.0837 -1.4974 1.2388 24 6 2.0213 -0.6900 1.2352 25 8 1.4249 -0.5109 2.2761 26 1 -0.3633 0.5264 0.8827 27 1 -0.3634 0.5011 -0.8972 28 1 -0.3634 -1.0276 0.0146 29 1 3.1203 1.4531 0.0147 30 1 1.6758 1.9531 -0.8971 31 1 1.6517 1.9614 0.8827 32 1 0.4902 0.1806 -2.4532 33 1 1.2344 -0.9222 -4.5195 34 1 3.1933 -2.4160 -4.4801 35 1 5.3948 -2.8028 -1.7606 36 1 4.9113 -6.5341 -6.5609 37 1 4.7707 -1.1460 0.0729 38 1 4.1911 -2.8230 0.0788 39 1 3.3360 -1.9203 2.0745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:23 Heat of formation + Delta-G solvation = -132.579810 kcal Electronic energy + Delta-G solvation = -26073.067013 eV Core-core repulsion = 22298.291442 eV Total energy + Delta-G solvation = -3774.775571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22633 -40.08729 -37.58622 -37.11928 -36.55281 -36.27960 -35.30915 -34.81583 -31.67880 -29.75911 -28.34587 -28.19639 -27.60439 -25.09555 -23.67383 -22.22669 -21.08360 -19.77984 -19.49132 -18.98925 -18.45290 -18.02182 -17.47182 -16.87637 -16.68432 -16.18218 -16.07440 -15.74923 -15.44911 -15.15697 -14.97430 -14.72469 -14.23119 -14.13634 -14.02641 -13.65035 -13.36575 -13.11154 -13.08679 -12.99579 -12.83588 -12.66719 -12.62542 -12.54440 -12.36918 -12.27397 -12.13552 -11.90283 -11.56133 -11.23673 -10.92801 -10.82425 -10.35652 -9.59609 -9.10136 -8.77496 -7.51821 0.07755 0.30638 0.45236 1.36864 1.37660 1.49875 1.53848 2.17653 2.19843 2.56277 2.74719 2.75932 3.33183 3.42242 3.55488 3.59608 3.96614 4.03146 4.13514 4.21515 4.27380 4.39431 4.46070 4.50322 4.60474 4.77949 4.83024 4.88481 4.93948 4.98017 5.13080 5.22178 5.26799 5.28208 5.37733 5.47159 5.61812 5.74264 5.84475 5.96401 6.15359 6.25303 6.74486 7.08778 8.18180 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.004192 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.666321 B = 6678.377340 C = 7457.421880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 C -0.127 4.127 4 C -0.054 4.054 5 C -0.129 4.129 6 C -0.080 4.080 7 C -0.196 4.196 8 C 0.180 3.820 9 N -1.057 6.057 10 S 2.708 3.292 11 O -1.034 7.034 12 O -1.027 7.027 13 C -1.031 5.031 14 H 0.131 0.869 15 C 0.075 3.925 16 N -0.891 5.891 17 Si 0.990 3.010 18 H -0.257 1.257 19 H -0.266 1.266 20 H -0.241 1.241 21 C -0.143 4.143 22 C 0.149 3.851 23 N -0.707 5.707 24 C 0.525 3.475 25 O -0.582 6.582 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.426 0.574 36 H 0.300 0.700 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 15.710 5.433 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.037 4.037 3 C -0.184 4.184 4 C -0.055 4.055 5 C -0.148 4.148 6 C -0.098 4.098 7 C -0.217 4.217 8 C 0.082 3.918 9 N -0.804 5.804 10 S 2.810 3.190 11 O -1.024 7.024 12 O -1.017 7.017 13 C -1.165 5.165 14 H 0.149 0.851 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.808 3.192 18 H -0.182 1.182 19 H -0.190 1.190 20 H -0.163 1.163 21 C -0.147 4.147 22 C 0.025 3.975 23 N -0.358 5.358 24 C 0.312 3.688 25 O -0.463 6.463 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.262 0.738 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.272 14.684 5.960 16.702 hybrid contribution 1.024 -0.436 -0.559 1.245 sum -4.249 14.248 5.402 15.819 Atomic orbital electron populations 1.21869 0.90001 1.02542 1.04284 1.19376 0.98810 0.97250 0.88229 1.21816 1.01496 0.90716 1.04385 1.19226 0.94365 0.96486 0.95389 1.21346 1.01082 1.01588 0.90742 1.21241 0.94294 0.94368 0.99926 1.21977 0.99806 1.02215 0.97696 1.17329 0.88497 0.92259 0.93708 1.53545 1.25882 1.43605 1.57344 1.00480 0.71770 0.71205 0.75495 1.93343 1.48203 1.73609 1.87250 1.93357 1.45535 1.74394 1.88428 1.30817 1.66747 1.04530 1.14368 0.85070 1.25983 0.87478 0.93597 1.06846 1.69980 1.40798 1.03666 1.37776 0.85125 0.80025 0.79986 0.74111 1.18152 1.19043 1.16329 1.19379 0.99322 1.02615 0.93419 1.20037 0.93344 1.02893 0.81225 1.45224 1.29964 1.47479 1.13137 1.20224 0.79465 0.78383 0.90702 1.90706 1.56987 1.64521 1.34096 0.91086 0.88267 0.93539 0.92251 0.88743 0.91127 0.81978 0.82772 0.84191 0.73752 0.88969 0.87628 0.89176 0.75215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 7.61 71.98 0.55 -1.94 16 2 C -0.03 -0.73 0.78 -54.12 -0.04 -0.77 16 3 C -0.13 -2.11 8.33 71.98 0.60 -1.51 16 4 C -0.05 -1.32 4.70 -20.04 -0.09 -1.42 16 5 C -0.13 -2.85 9.02 22.35 0.20 -2.65 16 6 C -0.08 -2.12 10.04 22.21 0.22 -1.90 16 7 C -0.20 -6.88 8.96 22.35 0.20 -6.68 16 8 C 0.18 6.21 6.15 38.29 0.24 6.44 16 9 N -1.06 -39.38 5.20 -51.20 -0.27 -39.64 16 10 S 2.71 138.19 4.64 -56.49 -0.26 137.93 16 11 O -1.03 -58.80 18.02 -128.00 -2.31 -61.11 16 12 O -1.03 -59.24 17.45 -128.00 -2.23 -61.47 16 13 C -1.03 -52.37 7.59 67.73 0.51 -51.86 16 14 H 0.13 5.89 6.84 -2.91 -0.02 5.87 16 15 C 0.07 3.89 5.46 84.65 0.46 4.36 16 16 N -0.89 -50.69 13.19 21.45 0.28 -50.41 16 17 Si 0.99 38.40 29.54 68.60 2.03 40.43 16 18 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 19 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 20 H -0.24 -8.48 7.11 99.48 0.71 -7.78 16 21 C -0.14 -4.05 5.82 -19.85 -0.12 -4.16 16 22 C 0.15 3.44 6.23 85.72 0.53 3.98 16 23 N -0.71 -16.39 5.45 -472.98 -2.58 -18.97 16 24 C 0.52 13.85 6.61 87.57 0.58 14.43 16 25 O -0.58 -18.59 16.92 -3.05 -0.05 -18.64 16 26 H 0.07 1.39 7.78 -2.38 -0.02 1.37 16 27 H 0.10 1.30 6.32 -2.39 -0.02 1.28 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.18 8.13 -2.39 -0.02 1.16 16 31 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.16 2.34 6.25 -2.91 -0.02 2.32 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.14 5.58 4.43 -2.91 -0.01 5.57 16 35 H 0.43 12.74 7.97 -96.74 -0.77 11.96 16 36 H 0.30 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.09 2.09 7.40 -2.39 -0.02 2.08 16 39 H 0.41 8.19 8.82 -92.71 -0.82 7.37 16 Total: -1.00 -77.65 331.92 -2.01 -79.65 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -0.46 Total: 35.92 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 3.85 Total: -43.68 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -2.56 Total: -109.02 kcal Atomic # 8 Polarization: -136.63 SS G_CDS: -4.59 Total: -141.22 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 138.19 SS G_CDS: -0.26 Total: 137.93 kcal Total: -77.65 -2.01 -79.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.929 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds