Wall clock time and date at job start Fri Apr 10 2020 18:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.08850 * 2 1 4 4 C 1.50415 * 109.14745 * 119.17890 * 2 1 3 5 5 C 1.38540 * 118.66317 * 321.11021 * 4 2 1 6 6 C 1.38708 * 120.28186 * 179.87549 * 5 4 2 7 7 N 1.39673 * 120.17675 * 179.97438 * 6 5 4 8 8 S 1.65599 * 120.00617 * 133.85302 * 7 6 5 9 9 O 1.42101 * 106.40283 * 184.89404 * 8 7 6 10 10 O 1.42099 * 106.39655 * 51.97566 * 8 7 6 11 11 C 1.76195 * 107.21653 * 298.43614 * 8 7 6 12 12 H 1.07997 * 120.00273 * 11.47288 * 11 8 7 13 13 C 1.37881 * 119.99851 * 191.47217 * 11 8 7 14 14 N 1.31512 * 120.00146 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99972 * 179.97438 * 13 11 8 16 16 H 1.48511 * 109.46852 * 60.00693 * 15 13 11 17 17 H 1.48496 * 109.47158 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47504 * 300.00404 * 15 13 11 19 19 C 1.38939 * 119.65837 * 0.26296 * 6 5 4 20 20 C 1.37866 * 119.79974 * 359.51057 * 19 6 5 21 21 C 1.37889 * 121.37820 * 141.04562 * 4 2 1 22 22 C 1.50296 * 121.62221 * 0.22363 * 21 4 2 23 23 N 1.45266 * 112.00929 * 338.41245 * 22 21 4 24 24 C 1.33448 * 123.56375 * 22.04788 * 23 22 21 25 25 O 1.21283 * 118.57486 * 179.41088 * 24 23 22 26 26 H 1.08994 * 109.46937 * 300.81719 * 1 2 3 27 27 H 1.08994 * 109.47025 * 60.82357 * 1 2 3 28 28 H 1.09002 * 109.46390 * 180.81946 * 1 2 3 29 29 H 1.08997 * 109.46908 * 179.18125 * 3 2 1 30 30 H 1.09000 * 109.47293 * 299.18007 * 3 2 1 31 31 H 1.09000 * 109.47110 * 59.18333 * 3 2 1 32 32 H 1.08006 * 119.86672 * 359.89580 * 5 4 2 33 33 H 0.97003 * 119.99822 * 313.85880 * 7 6 5 34 34 H 0.96996 * 120.00297 * 179.97438 * 14 13 11 35 35 H 1.08005 * 120.10238 * 179.77248 * 19 6 5 36 36 H 1.08000 * 119.75892 * 180.26404 * 20 19 6 37 37 H 1.08996 * 108.97313 * 99.06283 * 22 21 4 38 38 H 1.09004 * 108.96860 * 217.76287 * 22 21 4 39 39 H 0.97000 * 118.22022 * 202.07525 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0304 1.4459 0.0000 4 6 2.0234 -0.6928 1.2406 5 6 1.3476 -0.4838 2.4318 6 6 1.7720 -1.1078 3.5956 7 7 1.0893 -0.8951 4.7954 8 16 0.7034 -2.1790 5.7675 9 8 -0.0754 -1.6549 6.8342 10 8 1.9076 -2.9060 5.9686 11 6 -0.3646 -3.2314 4.8420 12 1 -0.4928 -3.0727 3.7815 13 6 -1.0365 -4.2575 5.4718 14 7 -0.8807 -4.4505 6.7634 15 14 -2.1693 -5.3728 4.4908 16 1 -1.3915 -6.0544 3.4250 17 1 -2.7676 -6.3885 5.3939 18 1 -3.2496 -4.5621 3.8738 19 6 2.8834 -1.9408 3.5630 20 6 3.5492 -2.1487 2.3738 21 6 3.1237 -1.5232 1.2098 22 6 3.8867 -1.7737 -0.0607 23 7 3.0868 -1.4930 -1.2404 24 6 2.0213 -0.6896 -1.2352 25 8 1.4250 -0.5102 -2.2760 26 1 -0.3633 0.5264 0.8825 27 1 -0.3633 0.5010 -0.8972 28 1 -0.3632 -1.0276 0.0147 29 1 3.1203 1.4532 0.0147 30 1 1.6758 1.9531 -0.8972 31 1 1.6517 1.9614 0.8826 32 1 0.4863 0.1675 2.4544 33 1 0.8410 0.0047 5.0592 34 1 -1.3537 -5.1721 7.2065 35 1 3.2224 -2.4274 4.4657 36 1 4.4105 -2.7998 2.3483 37 1 4.7721 -1.1381 -0.0735 38 1 4.2008 -2.8171 -0.0855 39 1 3.3407 -1.9126 -2.0772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192986258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:31 Heat of formation + Delta-G solvation = -106.689145 kcal Electronic energy + Delta-G solvation = -25881.189692 eV Core-core repulsion = 22107.536824 eV Total energy + Delta-G solvation = -3773.652868 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.13281 -38.88855 -36.11034 -35.56379 -35.27223 -34.16480 -33.70654 -33.14607 -29.92047 -29.40191 -27.38502 -26.24664 -26.18650 -23.94074 -22.35666 -21.29818 -19.26943 -18.71026 -17.99158 -17.56200 -17.03488 -16.40385 -15.89651 -15.67082 -15.06955 -15.05457 -14.60412 -14.22691 -13.96785 -13.80631 -13.73595 -13.65184 -13.38612 -13.18476 -12.31995 -12.20442 -12.11190 -12.05040 -12.00317 -11.48061 -11.36657 -11.29987 -11.25120 -10.93374 -10.67751 -10.60611 -10.47826 -10.27746 -9.97820 -9.75297 -9.31477 -9.27573 -8.95680 -8.61462 -7.87508 -6.78180 -5.42041 1.38512 1.52993 2.11623 2.53746 3.04817 3.09153 3.13081 3.15356 3.85789 3.98342 4.31999 4.41038 4.44835 4.57400 4.64061 4.88599 4.94445 5.07474 5.24303 5.32635 5.45587 5.52223 5.57751 5.59842 5.71823 5.77361 5.79279 5.90986 5.98348 6.14763 6.17788 6.29453 6.40117 6.50853 6.62539 6.70830 6.90525 7.11894 7.13643 7.24574 7.69641 7.88694 8.08746 8.80019 10.15192 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.004378 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.534762 B = 6394.296890 C = 6936.381577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 C -0.130 4.130 4 C -0.057 4.057 5 C -0.135 4.135 6 C 0.188 3.812 7 N -1.075 6.075 8 S 2.703 3.297 9 O -0.989 6.989 10 O -1.002 7.002 11 C -1.013 5.013 12 H 0.103 0.897 13 C 0.134 3.866 14 N -0.841 5.841 15 Si 0.920 3.080 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.263 1.263 19 C -0.142 4.142 20 C -0.084 4.084 21 C -0.130 4.130 22 C 0.158 3.842 23 N -0.718 5.718 24 C 0.534 3.466 25 O -0.550 6.550 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.413 0.587 34 H 0.292 0.708 35 H 0.162 0.838 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.180 7.274 -12.281 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.038 4.038 3 C -0.187 4.187 4 C -0.058 4.058 5 C -0.157 4.157 6 C 0.090 3.910 7 N -0.819 5.819 8 S 2.805 3.195 9 O -0.979 6.979 10 O -0.992 6.992 11 C -1.147 5.147 12 H 0.121 0.879 13 C -0.084 4.084 14 N -0.470 5.470 15 Si 0.744 3.256 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.188 1.188 19 C -0.163 4.163 20 C -0.103 4.103 21 C -0.131 4.131 22 C 0.034 3.966 23 N -0.369 5.369 24 C 0.321 3.679 25 O -0.428 6.428 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.247 0.753 34 H 0.103 0.897 35 H 0.179 0.821 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 8.116 7.115 -11.497 15.769 hybrid contribution -0.933 -0.657 -1.011 1.525 sum 7.183 6.458 -12.508 15.804 Atomic orbital electron populations 1.21865 0.90927 1.03317 1.03009 1.19328 0.98194 0.96275 0.89956 1.21793 1.01359 0.92378 1.03218 1.18989 0.95489 0.97658 0.93681 1.21065 1.00510 1.03458 0.90680 1.17375 0.90990 0.96847 0.85756 1.54115 1.70091 1.25074 1.32636 1.00947 0.74249 0.71900 0.72436 1.93398 1.71207 1.79606 1.53701 1.93324 1.49545 1.71162 1.85162 1.30359 1.46200 1.29555 1.08594 0.87854 1.24728 0.93861 0.95376 0.94479 1.69901 1.38272 1.29797 1.09046 0.86198 0.80060 0.79306 0.80072 1.18736 1.20003 1.18768 1.21959 0.93713 0.99969 1.00659 1.20775 0.99858 0.98619 0.91085 1.19392 0.97948 1.00823 0.94971 1.19946 0.92656 1.01807 0.82178 1.45268 1.30223 1.48583 1.12808 1.19788 0.79480 0.78278 0.90343 1.90723 1.56048 1.63059 1.32998 0.90990 0.90999 0.91891 0.92209 0.91452 0.90848 0.85152 0.75334 0.89719 0.82055 0.85295 0.90680 0.89342 0.76240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 7.59 37.16 0.28 -1.37 16 2 C -0.03 -0.43 0.78 -157.40 -0.12 -0.55 16 3 C -0.13 -1.32 8.34 37.16 0.31 -1.01 16 4 C -0.06 -0.77 4.72 -104.78 -0.49 -1.27 16 5 C -0.14 -2.01 8.97 -39.30 -0.35 -2.36 16 6 C 0.19 3.28 6.13 -83.85 -0.51 2.77 16 7 N -1.08 -20.35 5.77 32.38 0.19 -20.16 16 8 S 2.70 67.99 5.06 -107.50 -0.54 67.44 16 9 O -0.99 -27.79 17.57 -57.17 -1.00 -28.79 16 10 O -1.00 -26.83 15.17 -57.17 -0.87 -27.70 16 11 C -1.01 -27.00 9.61 30.60 0.29 -26.71 16 12 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 13 C 0.13 3.65 5.45 -17.82 -0.10 3.55 16 14 N -0.84 -23.97 12.84 55.43 0.71 -23.25 16 15 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 16 16 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 19 C -0.14 -2.45 9.23 -39.46 -0.36 -2.81 16 20 C -0.08 -1.14 9.62 -39.50 -0.38 -1.52 16 21 C -0.13 -1.63 5.81 -104.73 -0.61 -2.24 16 22 C 0.16 1.45 6.98 -6.05 -0.04 1.41 16 23 N -0.72 -7.55 5.45 -63.20 -0.34 -7.89 16 24 C 0.53 7.12 6.60 -12.03 -0.08 7.04 16 25 O -0.55 -8.90 16.88 5.55 0.09 -8.81 16 26 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 27 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 1.70 6.29 -52.48 -0.33 1.37 16 33 H 0.41 6.48 8.96 -34.47 -0.31 6.17 16 34 H 0.29 7.51 8.31 -40.82 -0.34 7.18 16 35 H 0.16 3.10 5.74 -52.48 -0.30 2.80 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.40 3.49 8.82 -40.82 -0.36 3.13 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -35.27 336.36 -8.42 -43.69 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.54 Total: 10.20 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -2.17 Total: -25.07 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.55 Total: -51.31 kcal Atomic # 8 Polarization: -63.52 SS G_CDS: -1.78 Total: -65.30 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 67.99 SS G_CDS: -0.54 Total: 67.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.27 -8.42 -43.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.996 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds