Wall clock time and date at job start Fri Apr 10 2020 18:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.08850 * 2 1 4 4 C 1.50415 * 109.14745 * 119.17890 * 2 1 3 5 5 C 1.38540 * 118.66317 * 321.11021 * 4 2 1 6 6 C 1.38708 * 120.28186 * 179.87549 * 5 4 2 7 7 N 1.39673 * 120.17675 * 179.97438 * 6 5 4 8 8 S 1.65599 * 120.00617 * 133.85302 * 7 6 5 9 9 O 1.42101 * 106.40283 * 184.89404 * 8 7 6 10 10 O 1.42099 * 106.39655 * 51.97566 * 8 7 6 11 11 C 1.76195 * 107.21653 * 298.43614 * 8 7 6 12 12 H 1.07997 * 120.00273 * 11.47288 * 11 8 7 13 13 C 1.37881 * 119.99851 * 191.47217 * 11 8 7 14 14 N 1.31512 * 120.00146 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99972 * 179.97438 * 13 11 8 16 16 H 1.48511 * 109.46852 * 60.00693 * 15 13 11 17 17 H 1.48496 * 109.47158 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47504 * 300.00404 * 15 13 11 19 19 C 1.38939 * 119.65837 * 0.26296 * 6 5 4 20 20 C 1.37866 * 119.79974 * 359.51057 * 19 6 5 21 21 C 1.37889 * 121.37820 * 141.04562 * 4 2 1 22 22 C 1.50296 * 121.62221 * 0.22363 * 21 4 2 23 23 N 1.45266 * 112.00929 * 338.41245 * 22 21 4 24 24 C 1.33448 * 123.56375 * 22.04788 * 23 22 21 25 25 O 1.21283 * 118.57486 * 179.41088 * 24 23 22 26 26 H 1.08994 * 109.46937 * 300.81719 * 1 2 3 27 27 H 1.08994 * 109.47025 * 60.82357 * 1 2 3 28 28 H 1.09002 * 109.46390 * 180.81946 * 1 2 3 29 29 H 1.08997 * 109.46908 * 179.18125 * 3 2 1 30 30 H 1.09000 * 109.47293 * 299.18007 * 3 2 1 31 31 H 1.09000 * 109.47110 * 59.18333 * 3 2 1 32 32 H 1.08006 * 119.86672 * 359.89580 * 5 4 2 33 33 H 0.97003 * 119.99822 * 313.85880 * 7 6 5 34 34 H 0.96996 * 120.00297 * 179.97438 * 14 13 11 35 35 H 1.08005 * 120.10238 * 179.77248 * 19 6 5 36 36 H 1.08000 * 119.75892 * 180.26404 * 20 19 6 37 37 H 1.08996 * 108.97313 * 99.06283 * 22 21 4 38 38 H 1.09004 * 108.96860 * 217.76287 * 22 21 4 39 39 H 0.97000 * 118.22022 * 202.07525 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0304 1.4459 0.0000 4 6 2.0234 -0.6928 1.2406 5 6 1.3476 -0.4838 2.4318 6 6 1.7720 -1.1078 3.5956 7 7 1.0893 -0.8951 4.7954 8 16 0.7034 -2.1790 5.7675 9 8 -0.0754 -1.6549 6.8342 10 8 1.9076 -2.9060 5.9686 11 6 -0.3646 -3.2314 4.8420 12 1 -0.4928 -3.0727 3.7815 13 6 -1.0365 -4.2575 5.4718 14 7 -0.8807 -4.4505 6.7634 15 14 -2.1693 -5.3728 4.4908 16 1 -1.3915 -6.0544 3.4250 17 1 -2.7676 -6.3885 5.3939 18 1 -3.2496 -4.5621 3.8738 19 6 2.8834 -1.9408 3.5630 20 6 3.5492 -2.1487 2.3738 21 6 3.1237 -1.5232 1.2098 22 6 3.8867 -1.7737 -0.0607 23 7 3.0868 -1.4930 -1.2404 24 6 2.0213 -0.6896 -1.2352 25 8 1.4250 -0.5102 -2.2760 26 1 -0.3633 0.5264 0.8825 27 1 -0.3633 0.5010 -0.8972 28 1 -0.3632 -1.0276 0.0147 29 1 3.1203 1.4532 0.0147 30 1 1.6758 1.9531 -0.8972 31 1 1.6517 1.9614 0.8826 32 1 0.4863 0.1675 2.4544 33 1 0.8410 0.0047 5.0592 34 1 -1.3537 -5.1721 7.2065 35 1 3.2224 -2.4274 4.4657 36 1 4.4105 -2.7998 2.3483 37 1 4.7721 -1.1381 -0.0735 38 1 4.2008 -2.8171 -0.0855 39 1 3.3407 -1.9126 -2.0772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192986258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:30 Heat of formation + Delta-G solvation = -134.651309 kcal Electronic energy + Delta-G solvation = -25882.402222 eV Core-core repulsion = 22107.536824 eV Total energy + Delta-G solvation = -3774.865398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14319 -40.03847 -37.60186 -37.09055 -36.42448 -36.23642 -35.26156 -34.85170 -31.04403 -30.53163 -28.29793 -28.27940 -27.16484 -24.98952 -23.51006 -22.34738 -21.15140 -20.00916 -19.26283 -18.99685 -18.40267 -17.97290 -17.25753 -16.89066 -16.60092 -16.20327 -16.04202 -15.71895 -15.47406 -15.14149 -14.79104 -14.61002 -14.50040 -14.16166 -14.01697 -13.44837 -13.34783 -13.25716 -13.14379 -13.07653 -13.04039 -12.62157 -12.57527 -12.42558 -12.35877 -12.27575 -12.17599 -11.83616 -11.30558 -11.26463 -10.95607 -10.83354 -10.17479 -9.75283 -9.13373 -8.76828 -7.52000 0.02000 0.36551 0.46086 1.31617 1.32846 1.45944 1.54264 2.16628 2.26229 2.53226 2.70100 2.82225 3.38772 3.43066 3.56909 3.70147 3.90724 4.02661 4.09475 4.26469 4.33919 4.48133 4.56905 4.66869 4.68640 4.73031 4.78169 4.83519 4.90678 5.03922 5.08744 5.19384 5.22731 5.24350 5.38174 5.49992 5.58107 5.83666 5.85342 5.95503 6.21774 6.31834 6.74683 7.16162 8.16981 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.004378 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.534762 B = 6394.296890 C = 6936.381577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 C -0.127 4.127 4 C -0.060 4.060 5 C -0.131 4.131 6 C 0.154 3.846 7 N -1.062 6.062 8 S 2.715 3.285 9 O -1.028 7.028 10 O -1.029 7.029 11 C -1.033 5.033 12 H 0.114 0.886 13 C 0.077 3.923 14 N -0.886 5.886 15 Si 0.982 3.018 16 H -0.253 1.253 17 H -0.260 1.260 18 H -0.252 1.252 19 C -0.169 4.169 20 C -0.077 4.077 21 C -0.120 4.120 22 C 0.155 3.845 23 N -0.708 5.708 24 C 0.529 3.471 25 O -0.586 6.586 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.426 0.574 34 H 0.300 0.700 35 H 0.134 0.866 36 H 0.162 0.838 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.945 7.172 -14.922 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.037 4.037 3 C -0.184 4.184 4 C -0.061 4.061 5 C -0.153 4.153 6 C 0.057 3.943 7 N -0.812 5.812 8 S 2.817 3.183 9 O -1.018 7.018 10 O -1.018 7.018 11 C -1.167 5.167 12 H 0.132 0.868 13 C -0.137 4.137 14 N -0.517 5.517 15 Si 0.800 3.200 16 H -0.177 1.177 17 H -0.184 1.184 18 H -0.176 1.176 19 C -0.191 4.191 20 C -0.096 4.096 21 C -0.121 4.121 22 C 0.032 3.968 23 N -0.359 5.359 24 C 0.316 3.684 25 O -0.467 6.467 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.262 0.738 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.920 7.013 -14.125 18.118 hybrid contribution -1.037 -0.562 -0.283 1.214 sum 7.882 6.451 -14.408 17.645 Atomic orbital electron populations 1.21876 0.91258 1.02431 1.03663 1.19359 0.98023 0.97402 0.88960 1.21797 1.01925 0.90873 1.03852 1.19217 0.95642 0.97673 0.93537 1.21174 1.00892 1.03074 0.90139 1.17585 0.91944 0.99065 0.85659 1.53335 1.70508 1.24237 1.33095 1.00248 0.73482 0.72212 0.72319 1.93336 1.72118 1.80439 1.55928 1.93291 1.50149 1.72506 1.85890 1.30706 1.46320 1.30298 1.09332 0.86833 1.25879 0.95442 0.96958 0.95464 1.69983 1.39784 1.31040 1.10867 0.85274 0.78187 0.77625 0.78882 1.17703 1.18420 1.17567 1.21924 0.94893 1.00945 1.01303 1.21053 1.00150 0.98476 0.89918 1.19800 0.97222 0.98902 0.96202 1.20230 0.92439 1.04454 0.79706 1.45239 1.29362 1.47410 1.13844 1.19947 0.79923 0.78546 0.90032 1.90711 1.57394 1.64478 1.34067 0.89722 0.90975 0.93536 0.91323 0.91233 0.89836 0.83771 0.73758 0.88983 0.84819 0.82042 0.87469 0.86323 0.74961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 7.59 71.98 0.55 -2.59 16 2 C -0.03 -0.77 0.78 -54.06 -0.04 -0.81 16 3 C -0.13 -2.25 8.34 71.98 0.60 -1.65 16 4 C -0.06 -1.47 4.72 -19.96 -0.09 -1.56 16 5 C -0.13 -3.71 8.97 22.45 0.20 -3.51 16 6 C 0.15 5.34 6.13 38.17 0.23 5.58 16 7 N -1.06 -41.04 5.77 -51.48 -0.30 -41.34 16 8 S 2.72 141.02 5.06 -56.49 -0.29 140.74 16 9 O -1.03 -59.95 17.57 -128.00 -2.25 -62.20 16 10 O -1.03 -57.34 15.17 -128.00 -1.94 -59.28 16 11 C -1.03 -55.79 9.61 67.74 0.65 -55.14 16 12 H 0.11 5.68 7.81 -2.91 -0.02 5.66 16 13 C 0.08 4.18 5.45 84.66 0.46 4.64 16 14 N -0.89 -51.57 12.84 21.45 0.28 -51.29 16 15 Si 0.98 40.91 29.54 68.60 2.03 42.94 16 16 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 17 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 18 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 19 C -0.17 -5.81 9.23 22.35 0.21 -5.60 16 20 C -0.08 -1.91 9.62 22.32 0.21 -1.69 16 21 C -0.12 -2.62 5.81 -19.93 -0.12 -2.73 16 22 C 0.15 2.11 6.98 85.74 0.60 2.70 16 23 N -0.71 -12.32 5.45 -472.99 -2.58 -14.90 16 24 C 0.53 12.78 6.60 87.57 0.58 13.36 16 25 O -0.59 -18.01 16.88 -3.04 -0.05 -18.06 16 26 H 0.08 1.70 6.40 -2.39 -0.02 1.68 16 27 H 0.07 1.66 7.72 -2.39 -0.02 1.65 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.14 3.55 6.29 -2.91 -0.02 3.53 16 33 H 0.43 13.65 8.96 -96.75 -0.87 12.78 16 34 H 0.30 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.13 5.33 5.74 -2.91 -0.02 5.32 16 36 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 1.04 8.10 -2.38 -0.02 1.02 16 39 H 0.41 5.69 8.82 -92.71 -0.82 4.87 16 Total: -1.00 -78.85 336.36 -1.63 -80.47 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -0.57 Total: 31.93 kcal Atomic # 6 Polarization: -53.05 SS G_CDS: 4.04 Total: -49.01 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -2.60 Total: -107.53 kcal Atomic # 8 Polarization: -135.30 SS G_CDS: -4.24 Total: -139.54 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 141.02 SS G_CDS: -0.29 Total: 140.74 kcal Total: -78.85 -1.63 -80.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.179 kcal (2) G-P(sol) polarization free energy of solvation -78.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds