Wall clock time and date at job start Fri Apr 10 2020 18:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34760 * 117.00142 * 2 1 4 4 O 1.21520 * 119.99690 * 359.97438 * 3 2 1 5 5 C 1.47332 * 120.00107 * 180.02562 * 3 2 1 6 6 C 1.39387 * 120.13974 * 5.25782 * 5 3 2 7 7 C 1.39282 * 119.76658 * 179.97438 * 6 5 3 8 8 C 1.43201 * 119.97283 * 180.02562 * 7 6 5 9 9 N 5.97802 * 160.82576 * 189.17779 * 2 1 3 10 10 C 1.40079 * 120.05299 * 359.97385 * 7 6 5 11 11 C 1.37523 * 120.28538 * 0.02562 * 10 7 6 12 12 C 1.50693 * 119.88387 * 179.97438 * 11 10 7 13 13 C 1.39189 * 120.22778 * 0.25856 * 11 10 7 14 14 N 1.38442 * 120.02538 * 179.74583 * 13 11 10 15 15 S 1.65595 * 120.00134 * 69.46584 * 14 13 11 16 16 O 1.42098 * 106.40572 * 179.53801 * 15 14 13 17 17 O 1.42101 * 106.40509 * 312.46548 * 15 14 13 18 18 C 1.76202 * 107.21559 * 65.99985 * 15 14 13 19 19 H 1.08002 * 120.00053 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00303 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00216 * 180.02562 * 20 18 15 22 22 Si 1.86802 * 119.99454 * 0.02562 * 20 18 15 23 23 H 1.48501 * 109.47651 * 89.99974 * 22 20 18 24 24 H 1.48505 * 109.46908 * 209.99836 * 22 20 18 25 25 H 1.48503 * 109.47471 * 329.99359 * 22 20 18 26 26 H 1.09001 * 109.46762 * 60.00084 * 1 2 3 27 27 H 1.08996 * 109.47281 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47027 * 300.00539 * 1 2 3 29 29 H 1.07999 * 120.11245 * 0.02562 * 6 5 3 30 30 H 1.08005 * 119.86197 * 180.02562 * 10 7 6 31 31 H 1.09003 * 109.47254 * 84.17197 * 12 11 10 32 32 H 1.09002 * 109.47811 * 324.17623 * 12 11 10 33 33 H 1.08995 * 109.47314 * 204.17517 * 12 11 10 34 34 H 0.96996 * 119.99812 * 249.47341 * 14 13 11 35 35 H 0.97005 * 119.99597 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5352 1.2778 -0.0006 6 6 4.2969 0.1158 -0.1116 7 6 5.6873 0.1977 -0.1118 8 6 6.4741 -0.9933 -0.2262 9 7 7.0985 -1.9383 -0.3132 10 6 6.3166 1.4443 -0.0014 11 6 5.5672 2.5922 0.1082 12 6 6.2535 3.9285 0.2271 13 6 4.1770 2.5234 0.1157 14 7 3.4268 3.6812 0.2315 15 16 3.3874 4.7705 -1.0150 16 8 2.5349 5.8279 -0.5973 17 8 4.7361 4.9714 -1.4152 18 6 2.5786 3.9848 -2.3690 19 1 2.2206 2.9707 -2.2694 20 6 2.4018 4.6649 -3.5553 21 7 1.7977 4.0786 -4.5656 22 14 3.0204 6.4191 -3.7273 23 1 4.4171 6.4044 -4.2316 24 1 2.1566 7.1570 -4.6837 25 1 2.9792 7.0906 -2.4034 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.8106 -0.8447 -0.1979 30 1 7.3949 1.5043 -0.0023 31 1 6.5063 4.2969 -0.7671 32 1 7.1642 3.8182 0.8159 33 1 5.5868 4.6370 0.7185 34 1 2.9242 3.8543 1.0429 35 1 1.6737 4.5570 -5.4004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:11 Heat of formation + Delta-G solvation = -92.813240 kcal Electronic energy + Delta-G solvation = -25841.283988 eV Core-core repulsion = 21932.399730 eV Total energy + Delta-G solvation = -3908.884258 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.066 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -40.64433 -39.26911 -36.92518 -36.13610 -35.75720 -34.68883 -34.51412 -33.03760 -32.80587 -30.14470 -27.63325 -26.86271 -26.33439 -24.02729 -23.07640 -20.74955 -19.36642 -18.39576 -17.92732 -17.41640 -17.19226 -16.93335 -16.23444 -16.05731 -15.65628 -15.22496 -14.39218 -14.11981 -13.83954 -13.70750 -13.48537 -13.22466 -13.17185 -13.00755 -12.98845 -12.78226 -12.59245 -12.03615 -11.87002 -11.81227 -11.68388 -11.44865 -11.30220 -10.90473 -10.68767 -10.59340 -10.48062 -10.33010 -9.96281 -9.66381 -9.22264 -9.04787 -8.96040 -8.36859 -6.80097 -5.32603 0.44899 0.88643 1.90158 2.47864 2.57397 2.79573 3.04671 3.08440 3.14460 3.22743 3.73422 3.79569 3.91961 4.04220 4.59006 4.66760 4.68932 5.00921 5.09935 5.12225 5.23164 5.31214 5.35136 5.47697 5.63467 5.74001 5.81496 6.02266 6.05608 6.11228 6.25039 6.39387 6.46677 6.60940 6.87367 7.40323 7.47395 7.51756 7.95579 8.26518 8.70268 10.32391 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.006148 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.359257 B = 4553.203627 C = 5554.813334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.361 6.361 3 C 0.504 3.496 4 O -0.468 6.468 5 C -0.126 4.126 6 C -0.014 4.014 7 C -0.049 4.049 8 C 0.266 3.734 9 N -0.424 5.424 10 C -0.032 4.032 11 C -0.084 4.084 12 C -0.113 4.113 13 C 0.255 3.745 14 N -1.059 6.059 15 S 2.665 3.335 16 O -0.997 6.997 17 O -0.997 6.997 18 C -1.001 5.001 19 H 0.123 0.877 20 C 0.154 3.846 21 N -0.821 5.821 22 Si 0.800 3.200 23 H -0.245 1.245 24 H -0.255 1.255 25 H -0.222 1.222 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.423 0.577 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -6.406 10.138 12.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.346 3.654 4 O -0.353 6.353 5 C -0.131 4.131 6 C -0.036 4.036 7 C -0.053 4.053 8 C -0.050 4.050 9 N -0.099 5.099 10 C -0.053 4.053 11 C -0.087 4.087 12 C -0.170 4.170 13 C 0.156 3.844 14 N -0.808 5.808 15 S 2.769 3.231 16 O -0.987 6.987 17 O -0.987 6.987 18 C -1.136 5.136 19 H 0.141 0.859 20 C -0.066 4.066 21 N -0.450 5.450 22 Si 0.620 3.380 23 H -0.169 1.169 24 H -0.179 1.179 25 H -0.144 1.144 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.261 0.739 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.520 -6.648 9.745 12.633 hybrid contribution -1.102 0.541 -0.347 1.276 sum 3.418 -6.107 9.398 11.717 Atomic orbital electron populations 1.23259 0.75946 1.03365 1.03031 1.86493 1.23602 1.32736 1.84964 1.20741 0.88509 0.81859 0.74258 1.90948 1.66094 1.35354 1.42922 1.19250 0.89979 0.93921 1.09958 1.21277 0.91360 0.98421 0.92529 1.15821 0.91259 0.87912 1.10302 1.25503 0.93324 0.92761 0.93372 1.81239 1.08759 1.10488 1.09417 1.21088 1.00575 0.89418 0.94211 1.20119 0.91663 0.97091 0.99854 1.21104 0.98997 0.91599 1.05321 1.17174 0.89429 0.85149 0.92683 1.53184 1.60611 1.32928 1.34040 1.01925 0.74617 0.72402 0.74127 1.93493 1.68212 1.53950 1.83090 1.93426 1.37647 1.85266 1.82342 1.30249 1.55064 1.14727 1.13535 0.85917 1.24404 0.90309 0.97719 0.94120 1.69984 1.34099 1.37757 1.03181 0.87898 0.81561 0.84641 0.83886 1.16884 1.17942 1.14417 0.91322 0.88316 0.91922 0.83322 0.83879 0.86518 0.92066 0.91841 0.73908 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.07 9.82 -40.66 -0.40 -5.46 16 3 C 0.50 8.42 7.83 34.43 0.27 8.69 16 4 O -0.47 -9.23 13.74 -19.28 -0.26 -9.50 16 5 C -0.13 -1.94 5.88 -104.88 -0.62 -2.55 16 6 C -0.01 -0.18 9.31 -38.77 -0.36 -0.54 16 7 C -0.05 -0.57 5.73 -106.89 -0.61 -1.19 16 8 C 0.27 3.25 15.31 -22.47 -0.34 2.91 16 9 N -0.42 -5.95 18.54 41.84 0.78 -5.18 16 10 C -0.03 -0.37 9.39 -39.15 -0.37 -0.73 16 11 C -0.08 -1.20 5.67 -104.53 -0.59 -1.79 16 12 C -0.11 -1.59 8.00 36.00 0.29 -1.30 16 13 C 0.26 4.19 5.88 -83.63 -0.49 3.70 16 14 N -1.06 -19.60 2.91 32.56 0.09 -19.51 16 15 S 2.66 63.46 3.96 -107.50 -0.43 63.03 16 16 O -1.00 -26.18 16.02 -57.17 -0.92 -27.09 16 17 O -1.00 -23.28 11.90 -57.17 -0.68 -23.96 16 18 C -1.00 -27.44 10.12 30.60 0.31 -27.13 16 19 H 0.12 3.48 7.21 -52.49 -0.38 3.11 16 20 C 0.15 4.34 5.47 -17.82 -0.10 4.25 16 21 N -0.82 -23.41 13.96 55.43 0.77 -22.64 16 22 Si 0.80 20.02 26.54 -169.99 -4.51 15.51 16 23 H -0.25 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.22 -5.64 5.61 56.52 0.32 -5.33 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.12 1.89 6.37 -51.93 -0.33 1.56 16 32 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.06 0.93 6.64 -51.93 -0.34 0.58 16 34 H 0.42 6.84 8.63 -34.46 -0.30 6.54 16 35 H 0.28 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -33.23 321.73 -5.34 -38.56 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.08 Total: 5.58 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.55 Total: -14.19 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 1.64 Total: -47.32 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -2.26 Total: -66.02 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.51 Total: 15.51 kcal Atomic # 16 Polarization: 63.46 SS G_CDS: -0.43 Total: 63.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.23 -5.34 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.248 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds