Wall clock time and date at job start Fri Apr 10 2020 18:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34760 * 117.00142 * 2 1 4 4 O 1.21520 * 119.99690 * 359.97438 * 3 2 1 5 5 C 1.47332 * 120.00107 * 180.02562 * 3 2 1 6 6 C 1.39387 * 120.13974 * 5.25782 * 5 3 2 7 7 C 1.39282 * 119.76658 * 179.97438 * 6 5 3 8 8 C 1.43201 * 119.97283 * 180.02562 * 7 6 5 9 9 N 5.97802 * 160.82576 * 189.17779 * 2 1 3 10 10 C 1.40079 * 120.05299 * 359.97385 * 7 6 5 11 11 C 1.37523 * 120.28538 * 0.02562 * 10 7 6 12 12 C 1.50693 * 119.88387 * 179.97438 * 11 10 7 13 13 C 1.39189 * 120.22778 * 0.25856 * 11 10 7 14 14 N 1.38442 * 120.02538 * 179.74583 * 13 11 10 15 15 S 1.65595 * 120.00134 * 69.46584 * 14 13 11 16 16 O 1.42098 * 106.40572 * 179.53801 * 15 14 13 17 17 O 1.42101 * 106.40509 * 312.46548 * 15 14 13 18 18 C 1.76202 * 107.21559 * 65.99985 * 15 14 13 19 19 H 1.08002 * 120.00053 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00303 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00216 * 180.02562 * 20 18 15 22 22 Si 1.86802 * 119.99454 * 0.02562 * 20 18 15 23 23 H 1.48501 * 109.47651 * 89.99974 * 22 20 18 24 24 H 1.48505 * 109.46908 * 209.99836 * 22 20 18 25 25 H 1.48503 * 109.47471 * 329.99359 * 22 20 18 26 26 H 1.09001 * 109.46762 * 60.00084 * 1 2 3 27 27 H 1.08996 * 109.47281 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47027 * 300.00539 * 1 2 3 29 29 H 1.07999 * 120.11245 * 0.02562 * 6 5 3 30 30 H 1.08005 * 119.86197 * 180.02562 * 10 7 6 31 31 H 1.09003 * 109.47254 * 84.17197 * 12 11 10 32 32 H 1.09002 * 109.47811 * 324.17623 * 12 11 10 33 33 H 1.08995 * 109.47314 * 204.17517 * 12 11 10 34 34 H 0.96996 * 119.99812 * 249.47341 * 14 13 11 35 35 H 0.97005 * 119.99597 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5352 1.2778 -0.0006 6 6 4.2969 0.1158 -0.1116 7 6 5.6873 0.1977 -0.1118 8 6 6.4741 -0.9933 -0.2262 9 7 7.0985 -1.9383 -0.3132 10 6 6.3166 1.4443 -0.0014 11 6 5.5672 2.5922 0.1082 12 6 6.2535 3.9285 0.2271 13 6 4.1770 2.5234 0.1157 14 7 3.4268 3.6812 0.2315 15 16 3.3874 4.7705 -1.0150 16 8 2.5349 5.8279 -0.5973 17 8 4.7361 4.9714 -1.4152 18 6 2.5786 3.9848 -2.3690 19 1 2.2206 2.9707 -2.2694 20 6 2.4018 4.6649 -3.5553 21 7 1.7977 4.0786 -4.5656 22 14 3.0204 6.4191 -3.7273 23 1 4.4171 6.4044 -4.2316 24 1 2.1566 7.1570 -4.6837 25 1 2.9792 7.0906 -2.4034 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.8106 -0.8447 -0.1979 30 1 7.3949 1.5043 -0.0023 31 1 6.5063 4.2969 -0.7671 32 1 7.1642 3.8182 0.8159 33 1 5.5868 4.6370 0.7185 34 1 2.9242 3.8543 1.0429 35 1 1.6737 4.5570 -5.4004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:09 Heat of formation + Delta-G solvation = -116.592285 kcal Electronic energy + Delta-G solvation = -25842.315125 eV Core-core repulsion = 21932.399730 eV Total energy + Delta-G solvation = -3909.915395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.066 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -41.84347 -40.43255 -38.09062 -37.68013 -37.29319 -36.54770 -35.87452 -35.12622 -33.93545 -31.33959 -28.72818 -28.49843 -27.80485 -25.17393 -24.22210 -21.92275 -21.18467 -19.70897 -19.47305 -18.84580 -18.76626 -18.44024 -17.37774 -17.26584 -17.16610 -16.79499 -16.08893 -15.47875 -15.21383 -15.02384 -14.92840 -14.78385 -14.34574 -14.25848 -14.17668 -14.07526 -13.84834 -13.48781 -13.37923 -13.05231 -12.91553 -12.86070 -12.83430 -12.70075 -12.48017 -12.04551 -11.87368 -11.83628 -11.73762 -11.29227 -11.21733 -10.77053 -10.06106 -9.61531 -8.91329 -7.45307 -0.72400 -0.18718 0.16233 1.07069 1.16567 1.22693 1.31682 1.54858 1.69760 1.90945 1.95999 2.39553 2.47765 2.68541 2.75527 3.24853 3.62264 3.65620 3.84030 4.04252 4.14534 4.28257 4.35179 4.37924 4.39772 4.65865 4.75580 4.79402 4.96265 5.04096 5.09301 5.28114 5.33437 5.42659 5.45393 5.73127 6.09695 6.12999 6.41541 6.58351 6.72695 8.26584 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.006148 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.359257 B = 4553.203627 C = 5554.813334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.501 3.499 4 O -0.510 6.510 5 C -0.142 4.142 6 C -0.001 4.001 7 C -0.036 4.036 8 C 0.289 3.711 9 N -0.448 5.448 10 C -0.009 4.009 11 C -0.091 4.091 12 C -0.118 4.118 13 C 0.222 3.778 14 N -1.048 6.048 15 S 2.691 3.309 16 O -1.027 7.027 17 O -0.993 6.993 18 C -1.024 5.024 19 H 0.100 0.900 20 C 0.108 3.892 21 N -0.856 5.856 22 Si 0.826 3.174 23 H -0.228 1.228 24 H -0.228 1.228 25 H -0.231 1.231 26 H 0.047 0.953 27 H 0.140 0.860 28 H 0.068 0.932 29 H 0.171 0.829 30 H 0.183 0.817 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.430 0.570 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -7.372 10.911 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.345 3.655 4 O -0.399 6.399 5 C -0.147 4.147 6 C -0.022 4.022 7 C -0.040 4.040 8 C -0.026 4.026 9 N -0.123 5.123 10 C -0.030 4.030 11 C -0.094 4.094 12 C -0.175 4.175 13 C 0.124 3.876 14 N -0.800 5.800 15 S 2.793 3.207 16 O -1.017 7.017 17 O -0.982 6.982 18 C -1.157 5.157 19 H 0.118 0.882 20 C -0.108 4.108 21 N -0.487 5.487 22 Si 0.642 3.358 23 H -0.151 1.151 24 H -0.150 1.150 25 H -0.153 1.153 26 H 0.066 0.934 27 H 0.158 0.842 28 H 0.086 0.914 29 H 0.188 0.812 30 H 0.200 0.800 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.270 0.730 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.471 -7.643 10.486 14.500 hybrid contribution -1.695 0.639 -0.499 1.879 sum 4.776 -7.004 9.987 13.100 Atomic orbital electron populations 1.23554 0.74535 1.05842 1.02311 1.86487 1.24978 1.31314 1.84313 1.21128 0.89227 0.81954 0.73162 1.90923 1.67074 1.36718 1.45148 1.19267 0.89480 0.94587 1.11356 1.21451 0.91637 0.98275 0.90845 1.15771 0.90804 0.87961 1.09440 1.25262 0.92607 0.92209 0.92539 1.81291 1.09638 1.11192 1.10204 1.21442 1.02284 0.88036 0.91211 1.20237 0.90739 0.98247 1.00210 1.21121 1.00651 0.91109 1.04625 1.17533 0.90388 0.84544 0.95155 1.52548 1.61236 1.33379 1.32874 1.01080 0.73911 0.72072 0.73653 1.93444 1.69235 1.55529 1.83489 1.93441 1.36464 1.85433 1.82903 1.30834 1.55258 1.14188 1.15405 0.88212 1.25176 0.90600 1.00826 0.94199 1.70028 1.35337 1.39348 1.03966 0.87489 0.82742 0.81338 0.84185 1.15083 1.15041 1.15323 0.93416 0.84190 0.91364 0.81189 0.80012 0.88685 0.87721 0.93104 0.72965 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.57 113.37 1.20 1.89 16 2 O -0.35 -9.76 9.82 -56.71 -0.56 -10.31 16 3 C 0.50 16.95 7.83 70.21 0.55 17.50 16 4 O -0.51 -20.97 13.74 19.77 0.27 -20.69 16 5 C -0.14 -4.26 5.88 -20.03 -0.12 -4.38 16 6 C 0.00 -0.02 9.31 22.80 0.21 0.19 16 7 C -0.04 -0.71 5.73 -21.34 -0.12 -0.84 16 8 C 0.29 6.07 15.31 88.33 1.35 7.42 16 9 N -0.45 -11.26 18.54 19.00 0.35 -10.91 16 10 C -0.01 -0.17 9.39 22.55 0.21 0.04 16 11 C -0.09 -2.39 5.67 -19.81 -0.11 -2.50 16 12 C -0.12 -3.05 8.00 71.23 0.57 -2.48 16 13 C 0.22 7.16 5.88 38.91 0.23 7.39 16 14 N -1.05 -39.28 2.91 -50.90 -0.15 -39.43 16 15 S 2.69 129.69 3.96 -56.49 -0.22 129.47 16 16 O -1.03 -54.80 16.02 -128.00 -2.05 -56.85 16 17 O -0.99 -46.08 11.90 -128.00 -1.52 -47.60 16 18 C -1.02 -57.76 10.12 67.74 0.69 -57.08 16 19 H 0.10 5.93 7.21 -2.91 -0.02 5.91 16 20 C 0.11 6.20 5.47 84.66 0.46 6.66 16 21 N -0.86 -49.83 13.96 21.45 0.30 -49.53 16 22 Si 0.83 40.45 26.54 68.60 1.82 42.27 16 23 H -0.23 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.23 -10.06 7.11 99.48 0.71 -9.36 16 25 H -0.23 -11.61 5.61 99.48 0.56 -11.05 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.17 3.05 7.61 -2.91 -0.02 3.03 16 30 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.09 2.92 6.37 -2.39 -0.02 2.90 16 32 H 0.10 1.73 8.12 -2.39 -0.02 1.71 16 33 H 0.05 1.42 6.64 -2.39 -0.02 1.41 16 34 H 0.43 14.34 8.63 -96.75 -0.83 13.51 16 35 H 0.29 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -73.93 321.73 3.55 -70.38 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.19 Total: 19.40 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 5.12 Total: -26.19 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: 0.50 Total: -99.87 kcal Atomic # 8 Polarization: -131.60 SS G_CDS: -3.86 Total: -135.46 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.82 Total: 42.27 kcal Atomic # 16 Polarization: 129.69 SS G_CDS: -0.22 Total: 129.47 kcal Total: -73.93 3.55 -70.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.211 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds