Wall clock time and date at job start Fri Apr 10 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 119.99860 * 2 1 4 4 O 1.21276 * 120.00570 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99978 * 179.97438 * 3 2 1 6 6 N 1.46901 * 109.47410 * 179.97438 * 5 3 2 7 7 C 1.46848 * 110.99528 * 65.64553 * 6 5 3 8 8 C 1.53148 * 109.45467 * 186.35277 * 7 6 5 9 9 C 1.52546 * 109.31555 * 301.74317 * 8 7 6 10 10 C 1.54123 * 110.08162 * 178.10710 * 9 8 7 11 11 C 1.54587 * 101.65242 * 94.64633 * 10 9 8 12 12 N 1.46816 * 105.49771 * 24.98292 * 11 10 9 13 13 C 1.46497 * 124.36519 * 163.07822 * 12 11 10 14 14 C 1.52999 * 109.47419 * 89.99965 * 13 12 11 15 15 C 1.50695 * 109.47492 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99919 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99889 * 179.97438 * 15 14 13 18 18 N 1.31506 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47351 * 60.00025 * 19 17 15 21 21 H 1.48491 * 109.47127 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47071 * 299.99932 * 19 17 15 23 23 C 1.34577 * 111.27423 * 343.07929 * 12 11 10 24 24 O 1.21279 * 125.02761 * 180.68280 * 23 12 11 25 25 C 1.52534 * 110.49503 * 56.30212 * 9 8 7 26 26 C 1.46856 * 111.00029 * 189.99948 * 6 5 3 27 27 H 1.08999 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47316 * 300.00490 * 1 2 3 29 29 H 1.09003 * 109.47055 * 60.00055 * 1 2 3 30 30 H 0.96999 * 119.99619 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47003 * 59.99696 * 5 3 2 32 32 H 1.09003 * 109.47251 * 300.00202 * 5 3 2 33 33 H 1.08993 * 109.47670 * 66.35821 * 7 6 5 34 34 H 1.09000 * 109.47717 * 306.34412 * 7 6 5 35 35 H 1.08995 * 109.50057 * 181.79160 * 8 7 6 36 36 H 1.09004 * 109.49740 * 61.69595 * 8 7 6 37 37 H 1.09006 * 110.99217 * 212.73806 * 10 9 8 38 38 H 1.08997 * 110.99506 * 336.55519 * 10 9 8 39 39 H 1.09007 * 110.24006 * 143.98669 * 11 10 9 40 40 H 1.08997 * 110.24553 * 265.88778 * 11 10 9 41 41 H 1.09000 * 109.47425 * 209.99815 * 13 12 11 42 42 H 1.09003 * 109.47011 * 329.99982 * 13 12 11 43 43 H 1.09000 * 109.46700 * 300.00295 * 14 13 12 44 44 H 1.09003 * 109.47015 * 60.00019 * 14 13 12 45 45 H 0.97003 * 119.99842 * 180.02562 * 18 17 15 46 46 H 1.09005 * 109.50034 * 63.63887 * 25 9 8 47 47 H 1.08999 * 109.49847 * 183.70520 * 25 9 8 48 48 H 1.09007 * 109.47545 * 53.65419 * 26 6 5 49 49 H 1.08997 * 109.47945 * 293.63623 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 7 4.1356 2.5522 -0.0002 7 6 3.7775 3.2375 1.2482 8 6 4.1626 4.7163 1.1469 9 6 5.6586 4.8303 0.8711 10 6 6.0573 6.3113 0.7186 11 6 6.5217 6.6587 2.1515 12 7 6.9374 5.3837 2.7491 13 6 7.7688 5.2652 3.9495 14 6 6.8725 5.2223 5.1886 15 6 7.7278 5.1010 6.4234 16 1 8.8031 5.0583 6.3334 17 6 7.1374 5.0445 7.6681 18 7 5.8279 5.0960 7.7777 19 14 8.1976 4.8934 9.1987 20 1 9.1093 6.0623 9.2868 21 1 7.3276 4.8520 10.4013 22 1 8.9988 3.6452 9.1246 23 6 6.4561 4.3379 2.0522 24 8 6.6374 3.1719 2.3325 25 6 6.0299 4.0555 -0.3892 26 6 5.5841 2.5981 -0.2377 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.9500 -0.8401 0.0004 31 1 4.0095 0.6531 -0.8891 32 1 4.0089 0.6535 0.8908 33 1 4.3115 2.7792 2.0805 34 1 2.7036 3.1524 1.4144 35 1 3.9263 5.2190 2.0847 36 1 3.6062 5.1823 0.3336 37 1 6.8737 6.4245 0.0052 38 1 5.2000 6.9185 0.4280 39 1 7.3628 7.3513 2.1178 40 1 5.6991 7.0927 2.7198 41 1 8.3573 4.3493 3.8949 42 1 8.4377 6.1235 4.0144 43 1 6.2840 6.1382 5.2432 44 1 6.2036 4.3640 5.1237 45 1 5.4126 5.0567 8.6535 46 1 5.5313 4.5007 -1.2503 47 1 7.1095 4.0928 -0.5345 48 1 5.8205 2.0491 -1.1492 49 1 6.1052 2.1445 0.6053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274075396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:32 Heat of formation + Delta-G solvation = -66.560502 kcal Electronic energy + Delta-G solvation = -28724.084209 eV Core-core repulsion = 24878.803430 eV Total energy + Delta-G solvation = -3845.280779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99081 -39.76646 -37.49641 -36.03137 -34.75553 -34.36093 -32.90078 -30.87774 -30.76195 -28.94090 -28.02057 -26.11906 -25.04387 -23.89012 -23.25030 -21.83205 -21.13587 -20.57108 -20.08781 -18.19956 -17.32199 -16.67598 -16.45323 -15.89844 -15.69006 -15.57338 -15.12452 -14.74772 -14.54820 -14.43793 -14.34438 -13.83032 -13.55415 -13.17889 -13.10474 -12.94155 -12.75670 -12.59612 -12.49738 -12.23434 -12.07987 -11.97403 -11.78586 -11.69918 -11.37020 -11.24956 -10.95814 -10.92061 -10.70842 -10.41900 -10.22287 -9.97392 -9.84109 -9.71246 -9.31125 -9.28795 -9.01075 -8.36959 -8.09713 -7.97146 -6.01871 -4.05605 2.56372 2.94770 3.09665 3.32533 3.36764 3.38838 3.60614 4.01541 4.45296 4.47741 4.58308 4.62496 4.76676 4.99782 5.01707 5.10375 5.18609 5.22919 5.28844 5.33984 5.37237 5.42874 5.54327 5.56071 5.65166 5.73774 5.78988 5.85430 5.89152 5.99535 6.01084 6.06346 6.14563 6.18185 6.25573 6.30910 6.40250 6.47862 6.82401 6.96806 7.06226 7.16435 7.33292 7.55042 7.67833 7.88090 7.98024 8.13707 8.34299 8.74044 9.01097 9.58295 11.09421 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.003210 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.104578 B = 8720.861272 C =10070.263200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.513 3.487 4 O -0.518 6.518 5 C 0.036 3.964 6 N -0.518 5.518 7 C 0.046 3.954 8 C -0.087 4.087 9 C -0.095 4.095 10 C -0.125 4.125 11 C 0.101 3.899 12 N -0.611 5.611 13 C 0.128 3.872 14 C 0.013 3.987 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.523 3.477 24 O -0.531 6.531 25 C -0.086 4.086 26 C 0.042 3.958 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.401 0.599 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.017 0.983 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 -5.641 -20.581 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.298 3.702 4 O -0.392 6.392 5 C -0.095 4.095 6 N -0.243 5.243 7 C -0.081 4.081 8 C -0.126 4.126 9 C -0.099 4.099 10 C -0.162 4.162 11 C -0.022 4.022 12 N -0.343 5.343 13 C 0.008 3.992 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C 0.310 3.690 24 O -0.408 6.408 25 C -0.125 4.125 26 C -0.085 4.085 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.234 0.766 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.035 0.965 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.338 -5.207 -20.590 22.163 hybrid contribution 1.067 -0.859 1.704 2.186 sum -5.271 -6.066 -18.886 20.524 Atomic orbital electron populations 1.21495 0.79686 1.01988 1.02322 1.45820 1.07732 1.08800 1.77217 1.20695 0.90179 0.83561 0.75717 1.90680 1.70113 1.30980 1.47434 1.21903 0.91865 0.92595 1.03148 1.61678 1.13883 1.12217 1.36509 1.22297 1.02025 0.94071 0.89723 1.21338 0.91967 0.96672 1.02584 1.21097 0.97107 0.96176 0.95523 1.22687 1.02080 0.94848 0.96615 1.22053 1.00299 0.86885 0.93011 1.48584 1.51313 1.06316 1.28124 1.21787 0.93059 1.01108 0.83251 1.19385 0.95125 0.97622 0.90339 1.21051 0.93067 1.51081 0.91013 0.92578 1.25000 0.94947 0.95131 0.99166 1.69963 1.08903 1.50155 1.24073 0.86618 0.80198 0.78706 0.82243 1.20177 1.21247 1.20172 1.20455 0.79181 0.85374 0.83987 1.90606 1.60540 1.17583 1.72100 1.21326 1.00444 0.94691 0.95991 1.22315 0.87138 0.97323 1.01709 0.90849 0.92271 0.92321 0.76624 0.88072 0.91674 0.93739 0.89182 0.91030 0.90092 0.90197 0.89296 0.90733 0.91132 0.91277 0.91743 0.96512 0.96204 0.92879 0.90498 0.91426 0.91282 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.20 5.71 -67.08 -0.38 -6.58 16 3 C 0.51 6.15 7.50 -10.99 -0.08 6.06 16 4 O -0.52 -8.26 14.32 5.56 0.08 -8.18 16 5 C 0.04 0.40 5.45 -4.97 -0.03 0.37 16 6 N -0.52 -7.01 4.38 -235.96 -1.03 -8.04 16 7 C 0.05 0.73 4.89 -3.78 -0.02 0.71 16 8 C -0.09 -1.27 4.77 -26.89 -0.13 -1.40 16 9 C -0.10 -1.33 0.55 -155.50 -0.09 -1.42 16 10 C -0.12 -1.40 6.21 -25.31 -0.16 -1.56 16 11 C 0.10 1.41 7.36 -3.04 -0.02 1.39 16 12 N -0.61 -11.29 2.94 -172.47 -0.51 -11.80 16 13 C 0.13 2.76 5.87 -4.04 -0.02 2.73 16 14 C 0.01 0.35 5.30 -27.89 -0.15 0.20 16 15 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C 0.52 9.71 6.32 -11.03 -0.07 9.64 16 24 O -0.53 -11.60 13.85 5.56 0.08 -11.52 16 25 C -0.09 -1.06 4.77 -26.89 -0.13 -1.18 16 26 C 0.04 0.55 5.24 -3.77 -0.02 0.53 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.40 2.08 8.83 -40.82 -0.36 1.72 16 31 H 0.10 0.83 7.98 -51.93 -0.41 0.42 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.04 0.83 6.68 -51.93 -0.35 0.48 16 34 H 0.09 1.50 5.76 -51.93 -0.30 1.21 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 38 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.56 7.94 -51.93 -0.41 1.15 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.73 8.01 -51.93 -0.42 0.31 16 49 H 0.07 1.06 5.78 -51.93 -0.30 0.76 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -36.21 383.45 -9.36 -45.57 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.40 Total: 0.77 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.68 Total: 3.70 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -1.19 Total: -52.97 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.16 Total: -19.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.21 -9.36 -45.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274075396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.989 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds