Wall clock time and date at job start Fri Apr 10 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 119.99860 * 2 1 4 4 O 1.21276 * 120.00570 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99978 * 179.97438 * 3 2 1 6 6 N 1.46901 * 109.47410 * 179.97438 * 5 3 2 7 7 C 1.46848 * 110.99528 * 65.64553 * 6 5 3 8 8 C 1.53148 * 109.45467 * 186.35277 * 7 6 5 9 9 C 1.52546 * 109.31555 * 301.74317 * 8 7 6 10 10 C 1.54123 * 110.08162 * 178.10710 * 9 8 7 11 11 C 1.54587 * 101.65242 * 94.64633 * 10 9 8 12 12 N 1.46816 * 105.49771 * 24.98292 * 11 10 9 13 13 C 1.46497 * 124.36519 * 163.07822 * 12 11 10 14 14 C 1.52999 * 109.47419 * 89.99965 * 13 12 11 15 15 C 1.50695 * 109.47492 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99919 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99889 * 179.97438 * 15 14 13 18 18 N 1.31506 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47351 * 60.00025 * 19 17 15 21 21 H 1.48491 * 109.47127 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47071 * 299.99932 * 19 17 15 23 23 C 1.34577 * 111.27423 * 343.07929 * 12 11 10 24 24 O 1.21279 * 125.02761 * 180.68280 * 23 12 11 25 25 C 1.52534 * 110.49503 * 56.30212 * 9 8 7 26 26 C 1.46856 * 111.00029 * 189.99948 * 6 5 3 27 27 H 1.08999 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47316 * 300.00490 * 1 2 3 29 29 H 1.09003 * 109.47055 * 60.00055 * 1 2 3 30 30 H 0.96999 * 119.99619 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47003 * 59.99696 * 5 3 2 32 32 H 1.09003 * 109.47251 * 300.00202 * 5 3 2 33 33 H 1.08993 * 109.47670 * 66.35821 * 7 6 5 34 34 H 1.09000 * 109.47717 * 306.34412 * 7 6 5 35 35 H 1.08995 * 109.50057 * 181.79160 * 8 7 6 36 36 H 1.09004 * 109.49740 * 61.69595 * 8 7 6 37 37 H 1.09006 * 110.99217 * 212.73806 * 10 9 8 38 38 H 1.08997 * 110.99506 * 336.55519 * 10 9 8 39 39 H 1.09007 * 110.24006 * 143.98669 * 11 10 9 40 40 H 1.08997 * 110.24553 * 265.88778 * 11 10 9 41 41 H 1.09000 * 109.47425 * 209.99815 * 13 12 11 42 42 H 1.09003 * 109.47011 * 329.99982 * 13 12 11 43 43 H 1.09000 * 109.46700 * 300.00295 * 14 13 12 44 44 H 1.09003 * 109.47015 * 60.00019 * 14 13 12 45 45 H 0.97003 * 119.99842 * 180.02562 * 18 17 15 46 46 H 1.09005 * 109.50034 * 63.63887 * 25 9 8 47 47 H 1.08999 * 109.49847 * 183.70520 * 25 9 8 48 48 H 1.09007 * 109.47545 * 53.65419 * 26 6 5 49 49 H 1.08997 * 109.47945 * 293.63623 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 7 4.1356 2.5522 -0.0002 7 6 3.7775 3.2375 1.2482 8 6 4.1626 4.7163 1.1469 9 6 5.6586 4.8303 0.8711 10 6 6.0573 6.3113 0.7186 11 6 6.5217 6.6587 2.1515 12 7 6.9374 5.3837 2.7491 13 6 7.7688 5.2652 3.9495 14 6 6.8725 5.2223 5.1886 15 6 7.7278 5.1010 6.4234 16 1 8.8031 5.0583 6.3334 17 6 7.1374 5.0445 7.6681 18 7 5.8279 5.0960 7.7777 19 14 8.1976 4.8934 9.1987 20 1 9.1093 6.0623 9.2868 21 1 7.3276 4.8520 10.4013 22 1 8.9988 3.6452 9.1246 23 6 6.4561 4.3379 2.0522 24 8 6.6374 3.1719 2.3325 25 6 6.0299 4.0555 -0.3892 26 6 5.5841 2.5981 -0.2377 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.9500 -0.8401 0.0004 31 1 4.0095 0.6531 -0.8891 32 1 4.0089 0.6535 0.8908 33 1 4.3115 2.7792 2.0805 34 1 2.7036 3.1524 1.4144 35 1 3.9263 5.2190 2.0847 36 1 3.6062 5.1823 0.3336 37 1 6.8737 6.4245 0.0052 38 1 5.2000 6.9185 0.4280 39 1 7.3628 7.3513 2.1178 40 1 5.6991 7.0927 2.7198 41 1 8.3573 4.3493 3.8949 42 1 8.4377 6.1235 4.0144 43 1 6.2840 6.1382 5.2432 44 1 6.2036 4.3640 5.1237 45 1 5.4126 5.0567 8.6535 46 1 5.5313 4.5007 -1.2503 47 1 7.1095 4.0928 -0.5345 48 1 5.8205 2.0491 -1.1492 49 1 6.1052 2.1445 0.6053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274075396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:31 Heat of formation + Delta-G solvation = -94.125356 kcal Electronic energy + Delta-G solvation = -28725.279511 eV Core-core repulsion = 24878.803430 eV Total energy + Delta-G solvation = -3846.476081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.23595 -40.76109 -38.67430 -37.49324 -36.05950 -35.54883 -34.70691 -32.43476 -31.89761 -30.34992 -29.09456 -27.25698 -26.72478 -25.01155 -24.37239 -23.61285 -22.24801 -21.60301 -21.43196 -19.55971 -18.70311 -18.20945 -17.56121 -17.16163 -17.04648 -16.68893 -16.52654 -16.29166 -15.79635 -15.60331 -15.49230 -15.08562 -14.68785 -14.52353 -14.43344 -14.30503 -14.06524 -14.03724 -13.70438 -13.35195 -13.20376 -13.09725 -13.05073 -12.90731 -12.83178 -12.77933 -12.59496 -12.30137 -12.11966 -11.98073 -11.82616 -11.48434 -11.43558 -11.25157 -10.74818 -10.63490 -10.45739 -10.10691 -9.53610 -9.24247 -8.26350 -6.40125 1.36353 1.40900 1.48583 1.63032 1.65705 2.14575 2.18463 2.39740 3.00024 3.06758 3.32329 3.50868 3.70852 3.86467 3.99297 4.06359 4.21291 4.25997 4.31604 4.33332 4.40888 4.46062 4.50621 4.54138 4.61309 4.62564 4.66614 4.71007 4.82320 4.84045 4.91961 4.94254 4.94892 4.97956 5.10000 5.10806 5.23687 5.30502 5.33430 5.43285 5.46473 5.59236 5.80558 5.94055 6.07204 6.12480 6.34209 6.58164 6.75454 7.27459 7.29168 7.30749 8.85635 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.003210 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.104578 B = 8720.861272 C =10070.263200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.727 5.727 3 C 0.508 3.492 4 O -0.564 6.564 5 C 0.034 3.966 6 N -0.515 5.515 7 C 0.055 3.945 8 C -0.085 4.085 9 C -0.088 4.088 10 C -0.107 4.107 11 C 0.091 3.909 12 N -0.621 5.621 13 C 0.143 3.857 14 C 0.026 3.974 15 C -0.547 4.547 16 H 0.068 0.932 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.258 1.258 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.508 3.492 24 O -0.574 6.574 25 C -0.084 4.084 26 C 0.041 3.959 27 H 0.111 0.889 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.418 0.582 31 H 0.137 0.863 32 H 0.061 0.939 33 H 0.002 0.998 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.090 0.910 43 H -0.004 1.004 44 H -0.031 1.031 45 H 0.264 0.736 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -5.177 -22.723 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.381 5.381 3 C 0.294 3.706 4 O -0.442 6.442 5 C -0.097 4.097 6 N -0.240 5.240 7 C -0.073 4.073 8 C -0.123 4.123 9 C -0.092 4.092 10 C -0.145 4.145 11 C -0.031 4.031 12 N -0.353 5.353 13 C 0.021 3.979 14 C -0.012 4.012 15 C -0.585 4.585 16 H 0.086 0.914 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.208 1.208 22 H -0.194 1.194 23 C 0.297 3.703 24 O -0.455 6.455 25 C -0.121 4.121 26 C -0.086 4.086 27 H 0.129 0.871 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.254 0.746 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.020 0.980 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.015 0.985 44 H -0.013 1.013 45 H 0.073 0.927 46 H 0.122 0.878 47 H 0.097 0.903 48 H 0.118 0.882 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.138 -4.763 -22.767 23.821 hybrid contribution 0.612 -1.103 2.391 2.703 sum -4.526 -5.866 -20.377 21.682 Atomic orbital electron populations 1.21624 0.78865 1.04098 1.01187 1.45743 1.08356 1.08621 1.75375 1.20907 0.90588 0.83835 0.75233 1.90655 1.70910 1.32722 1.49939 1.22055 0.91453 0.91645 1.04595 1.61735 1.14334 1.13533 1.34399 1.22091 1.00384 0.95209 0.89661 1.21330 0.92943 0.95619 1.02385 1.21105 0.95389 0.98506 0.94153 1.22761 1.04084 0.92491 0.95123 1.22385 1.01075 0.85184 0.94424 1.48718 1.50930 1.08503 1.27141 1.21337 0.92461 1.01418 0.82659 1.19183 0.94784 0.94198 0.93034 1.21525 0.93885 1.51073 0.91994 0.91411 1.26062 0.96343 0.94366 1.03118 1.70122 1.11074 1.51032 1.25097 0.85401 0.78342 0.79398 0.77313 1.18275 1.20807 1.19397 1.21429 0.78913 0.84775 0.85187 1.90577 1.61897 1.19523 1.73462 1.21399 1.01434 0.93825 0.95484 1.22369 0.86184 0.98381 1.01650 0.87097 0.94011 0.92895 0.74577 0.84537 0.92066 0.97982 0.90711 0.93084 0.87789 0.87230 0.86493 0.88165 0.92061 0.92891 0.89167 0.98524 1.01305 0.92701 0.87753 0.90343 0.88173 0.94846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 10.70 127.77 1.37 2.57 16 2 N -0.73 -11.50 5.71 -484.52 -2.77 -14.26 16 3 C 0.51 12.17 7.50 87.66 0.66 12.83 16 4 O -0.56 -18.45 14.32 -3.02 -0.04 -18.49 16 5 C 0.03 0.72 5.45 85.56 0.47 1.19 16 6 N -0.52 -13.80 4.38 -900.43 -3.95 -17.74 16 7 C 0.05 1.82 4.89 86.36 0.42 2.24 16 8 C -0.08 -2.48 4.77 30.49 0.15 -2.33 16 9 C -0.09 -2.37 0.55 -52.83 -0.03 -2.40 16 10 C -0.11 -2.06 6.21 31.51 0.20 -1.86 16 11 C 0.09 2.42 7.36 86.86 0.64 3.05 16 12 N -0.62 -23.36 2.94 -818.08 -2.40 -25.76 16 13 C 0.14 6.34 5.87 86.38 0.51 6.85 16 14 C 0.03 1.47 5.30 29.85 0.16 1.63 16 15 C -0.55 -32.17 9.11 25.60 0.23 -31.94 16 16 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.93 -59.12 13.29 21.45 0.28 -58.84 16 19 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.51 19.45 6.32 87.71 0.55 20.00 16 24 O -0.57 -26.75 13.85 -3.03 -0.04 -26.79 16 25 C -0.08 -1.83 4.77 30.49 0.15 -1.68 16 26 C 0.04 1.02 5.24 86.36 0.45 1.47 16 27 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.42 3.63 8.83 -92.71 -0.82 2.82 16 31 H 0.14 1.93 7.98 -2.39 -0.02 1.91 16 32 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 33 H 0.00 0.08 6.68 -2.39 -0.02 0.06 16 34 H 0.07 2.69 5.76 -2.39 -0.01 2.68 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.11 1.55 7.89 -2.38 -0.02 1.53 16 38 H 0.12 1.68 7.87 -2.39 -0.02 1.66 16 39 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 2.49 7.94 -2.39 -0.02 2.47 16 42 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H -0.03 -2.07 8.14 -2.39 -0.02 -2.09 16 45 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 46 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.10 1.84 8.01 -2.38 -0.02 1.82 16 49 H 0.03 1.08 5.78 -2.39 -0.01 1.07 16 Total: -1.00 -85.55 383.45 -0.40 -85.94 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.12 Total: 16.64 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.38 Total: 12.03 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -8.83 Total: -116.61 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -0.09 Total: -45.28 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -85.55 -0.40 -85.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274075396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.181 kcal (2) G-P(sol) polarization free energy of solvation -85.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds