Wall clock time and date at job start Fri Apr 10 2020 18:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 120.00167 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00074 * 3 2 1 5 5 H 1.48498 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46711 * 120.00127 * 3 2 1 7 7 C 1.38945 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00202 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00377 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99657 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00220 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47192 * 179.97438 * 12 10 9 14 14 S 1.65602 * 120.00025 * 164.99879 * 13 12 10 15 15 O 1.42091 * 106.40283 * 311.46236 * 14 13 12 16 16 O 1.42101 * 106.39839 * 178.54146 * 14 13 12 17 17 C 1.76202 * 107.21456 * 65.00314 * 14 13 12 18 18 C 1.38541 * 126.21284 * 115.00325 * 17 14 13 19 19 N 1.31486 * 109.00658 * 179.97438 * 18 17 14 20 20 N 1.40040 * 108.91563 * 359.97438 * 19 18 17 21 21 C 1.36529 * 132.43543 * 179.97438 * 20 19 18 22 22 C 1.34934 * 120.66189 * 179.97438 * 21 20 19 23 23 C 1.40473 * 120.43067 * 0.02562 * 22 21 20 24 24 C 1.36056 * 119.59175 * 0.02562 * 23 22 21 25 25 C 1.37140 * 107.44206 * 0.02562 * 20 19 18 26 26 H 0.97001 * 119.99432 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99944 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.46850 * 60.00077 * 12 10 9 29 29 H 1.08999 * 109.47116 * 299.99763 * 12 10 9 30 30 H 0.97007 * 120.00100 * 344.99964 * 13 12 10 31 31 H 1.08003 * 125.50011 * 359.97438 * 18 17 14 32 32 H 1.07997 * 119.66852 * 0.02562 * 21 20 19 33 33 H 1.08000 * 119.78550 * 179.75136 * 22 21 20 34 34 H 1.07998 * 120.20517 * 179.97438 * 23 22 21 35 35 H 1.08001 * 120.39088 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2436 -4.8630 -0.0011 13 7 2.1956 -5.9765 -0.0016 14 16 1.6806 -7.5062 0.3689 15 8 0.9176 -7.3947 1.5624 16 8 2.8162 -8.3519 0.2486 17 6 0.5571 -7.9989 -0.8958 18 6 0.7442 -9.0317 -1.8001 19 7 -0.3037 -9.1035 -2.5910 20 7 -1.2187 -8.1090 -2.2237 21 6 -2.4437 -7.7579 -2.7137 22 6 -3.1368 -6.7373 -2.1670 23 6 -2.6074 -6.0179 -1.0828 24 6 -1.3873 -6.3553 -0.5841 25 6 -0.6777 -7.4228 -1.1667 26 1 -0.4849 0.8401 0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6173 -4.9204 -0.8914 29 1 0.6166 -4.9209 0.8886 30 1 3.1276 -5.8178 -0.2190 31 1 1.6110 -9.6743 -1.8477 32 1 -2.8626 -8.3029 -3.5467 33 1 -4.1028 -6.4690 -2.5684 34 1 -3.1651 -5.2015 -0.6483 35 1 -0.9683 -5.8112 0.2494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309476550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:43 Heat of formation + Delta-G solvation = -1.251656 kcal Electronic energy + Delta-G solvation = -24924.566993 eV Core-core repulsion = 21051.945895 eV Total energy + Delta-G solvation = -3872.621098 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.36459 -38.48215 -37.65126 -36.93772 -35.63385 -34.69778 -33.81865 -33.30118 -31.38196 -31.12012 -29.01502 -27.19263 -24.47614 -24.11619 -23.34838 -22.32668 -19.68135 -19.27142 -18.16776 -18.12432 -17.52937 -17.24598 -16.52299 -16.17972 -15.83952 -15.68700 -15.47526 -15.10706 -14.73680 -14.50944 -14.28202 -13.73986 -13.56325 -12.82752 -12.59185 -12.43424 -12.32213 -12.23454 -11.92783 -11.85409 -11.81679 -11.55124 -11.49191 -11.13528 -11.02614 -10.83693 -10.51940 -10.32181 -9.76576 -9.64562 -9.38941 -8.62927 -8.33323 -8.11681 -6.54029 -3.95223 0.27628 0.59676 0.71801 1.86333 2.10136 2.91421 3.12789 3.20430 3.23717 3.30281 3.70466 3.87296 3.91864 4.08329 4.13401 4.28860 4.38015 4.56719 4.75763 4.81559 5.04598 5.12493 5.16977 5.24520 5.40598 5.55109 5.71850 5.74814 5.83695 5.93162 6.05382 6.26548 6.41722 7.06583 7.31646 7.44581 7.91401 8.44094 9.03648 9.36779 9.85851 10.63015 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.003964 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.061762 B = 7062.018921 C = 8415.113235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.553 5.553 10 C 0.435 3.565 11 O -0.586 6.586 12 C 0.104 3.896 13 N -1.098 6.098 14 S 2.734 3.266 15 O -0.962 6.962 16 O -0.965 6.965 17 C -0.835 4.835 18 C 0.176 3.824 19 N -0.321 5.321 20 N -0.265 5.265 21 C 0.113 3.887 22 C -0.158 4.158 23 C -0.049 4.049 24 C -0.141 4.141 25 C 0.208 3.792 26 H 0.274 0.726 27 H 0.394 0.606 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.428 0.572 31 H 0.208 0.792 32 H 0.174 0.826 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 -13.244 -4.817 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.188 5.188 10 C 0.219 3.781 11 O -0.471 6.471 12 C -0.026 4.026 13 N -0.862 5.862 14 S 2.820 3.180 15 O -0.952 6.952 16 O -0.955 6.955 17 C -0.933 4.933 18 C -0.005 4.005 19 N -0.141 5.141 20 N -0.028 5.028 21 C -0.014 4.014 22 C -0.179 4.179 23 C -0.073 4.073 24 C -0.161 4.161 25 C 0.086 3.914 26 H 0.084 0.916 27 H 0.228 0.772 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.267 0.733 31 H 0.224 0.776 32 H 0.191 0.809 33 H 0.180 0.820 34 H 0.174 0.826 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.661 -14.339 -5.141 18.038 hybrid contribution 0.030 1.420 -0.244 1.441 sum -9.631 -12.919 -5.385 16.990 Atomic orbital electron populations 1.69593 1.05963 1.28538 1.49725 1.25281 0.95669 0.99828 0.96826 0.85884 0.78799 0.80174 0.79199 1.19832 1.20893 1.19754 1.19692 0.93488 0.82007 1.48107 0.87726 1.41790 1.09298 1.04472 1.63264 1.19600 0.88387 0.84612 0.85482 1.90516 1.13635 1.86528 1.56432 1.21108 0.91730 0.87741 1.02033 1.55150 1.20013 1.22627 1.88426 1.00558 0.72642 0.71717 0.73061 1.93566 1.72839 1.86048 1.42743 1.93552 1.49361 1.65353 1.87226 1.31542 1.14355 1.16624 1.30752 1.23500 0.95879 0.93154 0.88013 1.77931 1.01415 1.09499 1.25257 1.46706 1.13224 1.21733 1.21124 1.21709 0.82547 0.97665 0.99504 1.21061 1.02046 0.96229 0.98598 1.21442 0.94161 0.97975 0.93688 1.21169 0.95900 0.96467 1.02521 1.19085 0.91860 0.92314 0.88153 0.91628 0.77221 0.90629 0.88878 0.73322 0.77580 0.80901 0.81951 0.82604 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.86 13.05 55.50 0.72 -22.14 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.10 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 8 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 9 N -0.55 -13.05 5.29 -10.96 -0.06 -13.11 16 10 C 0.44 9.66 7.85 -10.99 -0.09 9.57 16 11 O -0.59 -15.02 15.30 5.55 0.08 -14.93 16 12 C 0.10 1.73 5.32 -5.20 -0.03 1.70 16 13 N -1.10 -17.71 5.93 -11.66 -0.07 -17.78 16 14 S 2.73 41.66 5.87 -107.50 -0.63 41.02 16 15 O -0.96 -16.56 17.49 -57.17 -1.00 -17.56 16 16 O -0.96 -16.21 17.77 -57.17 -1.02 -17.23 16 17 C -0.84 -11.63 6.21 -39.22 -0.24 -11.88 16 18 C 0.18 2.28 11.61 -17.59 -0.20 2.08 16 19 N -0.32 -4.30 12.66 30.46 0.39 -3.91 16 20 N -0.27 -3.25 3.90 -10.71 -0.04 -3.29 16 21 C 0.11 0.93 11.19 -16.63 -0.19 0.74 16 22 C -0.16 -1.01 9.98 -39.91 -0.40 -1.41 16 23 C -0.05 -0.39 10.07 -39.52 -0.40 -0.79 16 24 C -0.14 -1.55 8.39 -39.40 -0.33 -1.88 16 25 C 0.21 2.73 6.70 -84.27 -0.56 2.17 16 26 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 27 H 0.39 8.62 7.90 -40.82 -0.32 8.30 16 28 H 0.08 1.07 6.62 -51.93 -0.34 0.72 16 29 H 0.09 1.37 6.65 -51.93 -0.35 1.02 16 30 H 0.43 7.18 7.70 -34.47 -0.27 6.91 16 31 H 0.21 2.04 8.06 -52.48 -0.42 1.61 16 32 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.16 1.72 5.67 -52.49 -0.30 1.42 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -35.84 322.87 -7.24 -43.08 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -2.78 Total: 13.18 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.68 Total: -7.29 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.94 Total: -60.23 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.93 Total: -49.72 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 41.66 SS G_CDS: -0.63 Total: 41.02 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.84 -7.24 -43.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309476550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.827 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds