Wall clock time and date at job start Fri Apr 10 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 120.00167 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00074 * 3 2 1 5 5 H 1.48498 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46711 * 120.00127 * 3 2 1 7 7 C 1.38945 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00202 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00377 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99657 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00220 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47192 * 179.97438 * 12 10 9 14 14 S 1.65602 * 120.00025 * 164.99879 * 13 12 10 15 15 O 1.42091 * 106.40283 * 311.46236 * 14 13 12 16 16 O 1.42101 * 106.39839 * 178.54146 * 14 13 12 17 17 C 1.76202 * 107.21456 * 65.00314 * 14 13 12 18 18 C 1.38541 * 126.21284 * 115.00325 * 17 14 13 19 19 N 1.31486 * 109.00658 * 179.97438 * 18 17 14 20 20 N 1.40040 * 108.91563 * 359.97438 * 19 18 17 21 21 C 1.36529 * 132.43543 * 179.97438 * 20 19 18 22 22 C 1.34934 * 120.66189 * 179.97438 * 21 20 19 23 23 C 1.40473 * 120.43067 * 0.02562 * 22 21 20 24 24 C 1.36056 * 119.59175 * 0.02562 * 23 22 21 25 25 C 1.37140 * 107.44206 * 0.02562 * 20 19 18 26 26 H 0.97001 * 119.99432 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99944 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.46850 * 60.00077 * 12 10 9 29 29 H 1.08999 * 109.47116 * 299.99763 * 12 10 9 30 30 H 0.97007 * 120.00100 * 344.99964 * 13 12 10 31 31 H 1.08003 * 125.50011 * 359.97438 * 18 17 14 32 32 H 1.07997 * 119.66852 * 0.02562 * 21 20 19 33 33 H 1.08000 * 119.78550 * 179.75136 * 22 21 20 34 34 H 1.07998 * 120.20517 * 179.97438 * 23 22 21 35 35 H 1.08001 * 120.39088 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2436 -4.8630 -0.0011 13 7 2.1956 -5.9765 -0.0016 14 16 1.6806 -7.5062 0.3689 15 8 0.9176 -7.3947 1.5624 16 8 2.8162 -8.3519 0.2486 17 6 0.5571 -7.9989 -0.8958 18 6 0.7442 -9.0317 -1.8001 19 7 -0.3037 -9.1035 -2.5910 20 7 -1.2187 -8.1090 -2.2237 21 6 -2.4437 -7.7579 -2.7137 22 6 -3.1368 -6.7373 -2.1670 23 6 -2.6074 -6.0179 -1.0828 24 6 -1.3873 -6.3553 -0.5841 25 6 -0.6777 -7.4228 -1.1667 26 1 -0.4849 0.8401 0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6173 -4.9204 -0.8914 29 1 0.6166 -4.9209 0.8886 30 1 3.1276 -5.8178 -0.2190 31 1 1.6110 -9.6743 -1.8477 32 1 -2.8626 -8.3029 -3.5467 33 1 -4.1028 -6.4690 -2.5684 34 1 -3.1651 -5.2015 -0.6483 35 1 -0.9683 -5.8112 0.2494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309476550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:42 Heat of formation + Delta-G solvation = -30.851826 kcal Electronic energy + Delta-G solvation = -24925.850553 eV Core-core repulsion = 21051.945895 eV Total energy + Delta-G solvation = -3873.904658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.18856 -40.26364 -38.48462 -38.13359 -36.92447 -36.32955 -35.43629 -34.15329 -33.30234 -31.89764 -29.84018 -28.77364 -26.18346 -24.92293 -24.15651 -23.26114 -21.39918 -20.42948 -20.04242 -19.18263 -18.70733 -18.12604 -17.46701 -17.28809 -17.18737 -16.76221 -16.57907 -16.37093 -16.06362 -15.98362 -15.77622 -15.24018 -14.46216 -14.19694 -13.93214 -13.55944 -13.39981 -13.31871 -13.20479 -13.14139 -13.06912 -13.02624 -12.90007 -12.42447 -12.39271 -12.10781 -11.89587 -11.83844 -11.52992 -10.72150 -10.54952 -10.42325 -10.03514 -9.17723 -8.47030 -5.95437 -0.58297 -0.39073 -0.09503 1.09671 1.16072 1.40725 1.45849 1.55164 1.95998 2.05753 2.26571 2.32764 2.74913 3.01874 3.12235 3.19780 3.33910 3.43042 3.80493 3.82380 3.99512 4.05084 4.21347 4.33634 4.35592 4.47825 4.61048 4.77104 4.92391 5.12831 5.17839 5.30326 5.43033 5.66069 5.91237 6.02782 6.20537 6.55627 7.09943 7.49749 8.03473 8.69399 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.003964 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.061762 B = 7062.018921 C = 8415.113235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.004 4.004 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.625 6.625 12 C 0.115 3.885 13 N -1.105 6.105 14 S 2.755 3.245 15 O -0.985 6.985 16 O -0.985 6.985 17 C -0.858 4.858 18 C 0.171 3.829 19 N -0.342 5.342 20 N -0.272 5.272 21 C 0.098 3.902 22 C -0.140 4.140 23 C -0.029 4.029 24 C -0.177 4.177 25 C 0.194 3.806 26 H 0.280 0.720 27 H 0.402 0.598 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.424 0.576 31 H 0.225 0.775 32 H 0.204 0.796 33 H 0.210 0.790 34 H 0.188 0.812 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 -12.648 -5.786 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.205 4.205 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.098 0.902 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.015 4.015 13 N -0.867 5.867 14 S 2.845 3.155 15 O -0.975 6.975 16 O -0.976 6.976 17 C -0.959 4.959 18 C -0.011 4.011 19 N -0.162 5.162 20 N -0.034 5.034 21 C -0.028 4.028 22 C -0.160 4.160 23 C -0.053 4.053 24 C -0.197 4.197 25 C 0.071 3.929 26 H 0.089 0.911 27 H 0.237 0.763 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.262 0.738 31 H 0.241 0.759 32 H 0.221 0.779 33 H 0.227 0.773 34 H 0.205 0.795 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.426 -13.745 -6.092 19.505 hybrid contribution 0.684 1.231 -0.009 1.408 sum -11.742 -12.515 -6.100 18.213 Atomic orbital electron populations 1.69633 1.06583 1.29561 1.49242 1.25957 0.96549 1.02114 0.95887 0.85036 0.77864 0.76890 0.78845 1.19854 1.19372 1.19952 1.19643 0.92858 0.83788 1.50507 0.90171 1.41793 1.09609 1.04322 1.63746 1.20497 0.88240 0.85969 0.83432 1.90489 1.15660 1.87461 1.57595 1.21129 0.91339 0.84573 1.04492 1.55194 1.19835 1.22922 1.88715 0.99638 0.72138 0.70935 0.72825 1.93524 1.73162 1.86245 1.44588 1.93512 1.50665 1.65717 1.87674 1.31123 1.15001 1.18264 1.31508 1.23844 0.96466 0.93170 0.87638 1.77831 1.01924 1.10612 1.25881 1.46925 1.14134 1.21347 1.21039 1.22578 0.81343 0.98496 1.00423 1.21680 1.03069 0.94268 0.97001 1.21986 0.92681 0.97724 0.92879 1.21338 0.97619 0.97055 1.03647 1.19304 0.91874 0.93020 0.88724 0.91053 0.76313 0.87741 0.86744 0.73828 0.75921 0.77933 0.77338 0.79455 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.35 13.05 21.66 0.28 -45.06 16 2 C 0.00 -0.19 5.50 84.92 0.47 0.27 16 3 Si 0.99 40.70 29.55 68.60 2.03 42.73 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.34 -18.16 9.68 84.04 0.81 -17.34 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.56 -26.56 5.29 -306.98 -1.62 -28.18 16 10 C 0.43 19.46 7.85 87.66 0.69 20.15 16 11 O -0.62 -32.96 15.30 -3.07 -0.05 -33.01 16 12 C 0.11 3.76 5.32 85.63 0.46 4.22 16 13 N -1.10 -36.22 5.93 -190.80 -1.13 -37.35 16 14 S 2.76 85.58 5.87 -56.49 -0.33 85.25 16 15 O -0.99 -34.36 17.49 -128.00 -2.24 -36.60 16 16 O -0.99 -34.05 17.77 -128.00 -2.27 -36.33 16 17 C -0.86 -23.96 6.21 22.51 0.14 -23.82 16 18 C 0.17 4.44 11.61 84.82 0.98 5.42 16 19 N -0.34 -8.96 12.66 -57.54 -0.73 -9.69 16 20 N -0.27 -6.22 3.90 -187.79 -0.73 -6.95 16 21 C 0.10 1.28 11.19 83.20 0.93 2.21 16 22 C -0.14 -1.12 9.98 22.05 0.22 -0.90 16 23 C -0.03 -0.35 10.07 22.31 0.22 -0.12 16 24 C -0.18 -3.55 8.39 22.39 0.19 -3.36 16 25 C 0.19 4.88 6.70 39.10 0.26 5.14 16 26 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 27 H 0.40 17.45 7.90 -92.71 -0.73 16.72 16 28 H 0.10 2.85 6.62 -2.39 -0.02 2.83 16 29 H 0.11 3.28 6.65 -2.39 -0.02 3.26 16 30 H 0.42 14.75 7.70 -96.74 -0.75 14.00 16 31 H 0.22 4.51 8.06 -2.91 -0.02 4.48 16 32 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.21 -0.25 8.06 -2.91 -0.02 -0.27 16 34 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 35 H 0.16 3.16 5.67 -2.91 -0.02 3.14 16 Total: -1.00 -79.07 322.87 -1.71 -80.78 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.29 Total: 32.54 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 5.37 Total: -8.13 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -3.93 Total: -127.23 kcal Atomic # 8 Polarization: -101.38 SS G_CDS: -4.56 Total: -105.94 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 85.58 SS G_CDS: -0.33 Total: 85.25 kcal Total: -79.07 -1.71 -80.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309476550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.930 kcal (2) G-P(sol) polarization free energy of solvation -79.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds