Wall clock time and date at job start Fri Apr 10 2020 18:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38712 * 120.87218 * 2 1 4 4 N 1.32231 * 119.16316 * 180.25808 * 3 2 1 5 5 C 1.31917 * 121.05162 * 359.74057 * 4 3 2 6 6 S 1.76201 * 119.03502 * 180.02562 * 5 4 3 7 7 C 1.81394 * 104.45291 * 269.98384 * 6 5 4 8 8 O 1.42098 * 104.27656 * 26.05390 * 6 5 4 9 9 O 1.42100 * 104.27496 * 153.90944 * 6 5 4 10 10 N 1.31545 * 121.92736 * 359.97438 * 5 4 3 11 11 C 1.33200 * 120.71874 * 0.02562 * 10 5 4 12 12 C 1.48237 * 120.55974 * 179.97438 * 11 10 5 13 13 O 1.21538 * 120.00067 * 144.66999 * 12 11 10 14 14 N 1.34778 * 119.99723 * 324.94294 * 12 11 10 15 15 C 1.36682 * 119.99808 * 184.88648 * 14 12 11 16 16 H 1.08000 * 120.00142 * 15.37169 * 15 14 12 17 17 C 1.39179 * 120.00246 * 195.36861 * 15 14 12 18 18 N 1.31276 * 119.99641 * 27.79751 * 17 15 14 19 19 Si 1.86797 * 120.00560 * 207.79155 * 17 15 14 20 20 H 1.48504 * 109.47096 * 94.98678 * 19 17 15 21 21 H 1.48496 * 109.47505 * 214.99046 * 19 17 15 22 22 H 1.48499 * 109.46968 * 334.99103 * 19 17 15 23 23 C 1.46499 * 120.00355 * 4.88620 * 14 12 11 24 24 C 1.47207 * 109.46728 * 85.01917 * 23 14 12 25 25 N 5.43508 * 132.96776 * 173.68340 * 2 1 3 26 26 H 1.08997 * 109.47374 * 264.32894 * 1 2 3 27 27 H 1.09001 * 109.47157 * 24.33015 * 1 2 3 28 28 H 1.09007 * 109.47244 * 144.33047 * 1 2 3 29 29 H 1.08000 * 120.42325 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47277 * 59.99323 * 7 6 5 31 31 H 1.09000 * 109.47713 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.46716 * 300.00164 * 7 6 5 33 33 H 0.97006 * 120.00302 * 179.97438 * 18 17 15 34 34 H 1.08995 * 109.47290 * 205.01482 * 23 14 12 35 35 H 1.08995 * 109.47156 * 325.02463 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2188 1.1906 0.0000 4 7 3.5405 1.1512 -0.0052 5 6 4.1869 0.0012 -0.0052 6 16 5.9489 0.0107 -0.0116 7 6 6.3953 0.0091 -1.7698 8 8 6.2948 1.2509 0.5895 9 8 6.3081 -1.2230 0.5952 10 7 3.5546 -1.1523 0.0003 11 6 2.2234 -1.1985 0.0058 12 6 1.5145 -2.5004 0.0115 13 8 0.4722 -2.6220 0.6246 14 7 2.0287 -3.5506 -0.6587 15 6 1.3272 -4.7210 -0.7371 16 1 0.2764 -4.7385 -0.4881 17 6 1.9669 -5.8903 -1.1379 18 7 3.2530 -6.0417 -0.9225 19 14 0.9956 -7.2443 -1.9820 20 1 1.1147 -7.0945 -3.4547 21 1 1.5328 -8.5671 -1.5739 22 1 -0.4331 -7.1475 -1.5886 23 6 3.3395 -3.4377 -1.3032 24 6 4.3961 -3.7285 -0.3204 25 7 5.2115 -3.9529 0.4376 26 1 -0.3634 -0.1015 1.0226 27 1 -0.3633 0.9364 -0.4234 28 1 -0.3634 -0.8349 -0.5993 29 1 1.7000 2.1379 -0.0004 30 1 5.9818 0.8958 -2.2504 31 1 7.4807 0.0152 -1.8692 32 1 5.9914 -0.8842 -2.2463 33 1 3.6989 -6.8568 -1.2014 34 1 3.4025 -4.1500 -2.1258 35 1 3.4694 -2.4261 -1.6876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328198535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:53 Heat of formation + Delta-G solvation = 7.079414 kcal Electronic energy + Delta-G solvation = -25951.304287 eV Core-core repulsion = 22079.044451 eV Total energy + Delta-G solvation = -3872.259836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.17046 -38.67194 -37.01845 -35.92048 -35.86160 -34.27619 -33.87257 -33.47333 -32.02598 -29.67756 -28.08306 -27.54706 -26.12322 -24.36090 -23.17959 -20.92770 -18.94321 -18.18481 -18.07687 -17.75449 -16.53276 -16.29457 -16.20277 -15.47599 -15.09101 -14.96154 -14.59176 -14.39006 -14.17049 -13.44069 -13.38617 -13.28003 -13.12165 -13.00024 -12.76442 -12.26509 -12.08238 -12.00623 -11.94745 -11.83020 -11.46922 -11.27641 -11.22791 -11.04792 -10.87288 -10.63923 -10.55600 -10.52465 -10.17810 -9.63621 -9.46512 -9.43902 -8.78324 -8.30414 -6.79806 -4.15525 -0.07047 0.44014 0.86021 2.64889 2.88374 3.08749 3.14233 3.14318 3.49490 3.69243 3.78283 3.98089 4.05843 4.28070 4.38671 4.40886 4.62352 4.66601 4.71750 4.80656 4.86184 5.01148 5.16961 5.41028 5.50890 5.57327 5.76900 5.85751 6.01610 6.10852 6.33133 6.39829 6.76459 7.20487 7.57399 7.68704 8.02469 8.71653 8.89069 9.09939 9.47151 10.23207 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.005569 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.251556 B = 5026.616949 C = 6429.985201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C 0.121 3.879 4 N -0.442 5.442 5 C -0.236 4.236 6 S 2.512 3.488 7 C -0.644 4.644 8 O -0.916 6.916 9 O -0.885 6.885 10 N -0.414 5.414 11 C 0.138 3.862 12 C 0.472 3.528 13 O -0.564 6.564 14 N -0.396 5.396 15 C -0.317 4.317 16 H 0.119 0.881 17 C 0.040 3.960 18 N -0.834 5.834 19 Si 0.929 3.071 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.264 1.264 23 C 0.227 3.773 24 C 0.234 3.766 25 N -0.430 5.430 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.179 0.821 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.281 0.719 34 H 0.117 0.883 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 11.730 -8.135 14.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.048 4.048 4 N -0.156 5.156 5 C -0.583 4.583 6 S 2.682 3.318 7 C -0.796 4.796 8 O -0.913 6.913 9 O -0.881 6.881 10 N -0.131 5.131 11 C -0.011 4.011 12 C 0.260 3.740 13 O -0.448 6.448 14 N -0.112 5.112 15 C -0.445 4.445 16 H 0.136 0.864 17 C -0.170 4.170 18 N -0.468 5.468 19 Si 0.754 3.246 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.188 1.188 23 C 0.099 3.901 24 C -0.085 4.085 25 N -0.109 5.109 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.196 0.804 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.171 11.140 -6.016 13.052 hybrid contribution -2.148 -0.605 -1.159 2.514 sum 1.024 10.535 -7.175 12.787 Atomic orbital electron populations 1.20802 0.87863 1.03152 1.04453 1.22008 0.99983 0.93745 0.94598 1.23342 0.89607 0.98222 0.93590 1.68342 1.10448 1.28013 1.08836 1.36464 1.25707 0.88725 1.07444 1.05772 0.72316 0.75285 0.78455 1.30159 1.12547 1.12347 1.24510 1.93601 1.79977 1.44524 1.73187 1.93761 1.78907 1.43293 1.72188 1.68857 1.09863 1.27264 1.07106 1.22335 0.89152 0.96096 0.93507 1.17116 0.88049 0.82922 0.85904 1.90660 1.25068 1.82842 1.46212 1.43551 1.14449 1.10971 1.42215 1.19889 0.95297 0.84146 1.45133 0.86385 1.25493 0.95979 0.98712 0.96821 1.69990 1.10402 1.28365 1.38078 0.85863 0.80260 0.79051 0.79436 1.19768 1.20686 1.18810 1.18633 0.78624 1.00694 0.92108 1.28398 0.93766 0.91579 0.94743 1.80903 1.11291 1.10569 1.08138 0.89263 0.91392 0.89234 0.80397 0.84849 0.84379 0.84509 0.90806 0.86496 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 8.76 36.01 0.32 -1.06 16 2 C -0.10 -1.51 5.94 -103.93 -0.62 -2.13 16 3 C 0.12 1.61 11.00 -17.20 -0.19 1.42 16 4 N -0.44 -6.80 10.07 -13.79 -0.14 -6.94 16 5 C -0.24 -3.93 7.37 -92.26 -0.68 -4.61 16 6 S 2.51 36.22 5.92 -107.50 -0.64 35.58 16 7 C -0.64 -5.56 10.79 101.05 1.09 -4.47 16 8 O -0.92 -14.91 17.71 -57.54 -1.02 -15.93 16 9 O -0.89 -16.48 17.11 -57.54 -0.98 -17.46 16 10 N -0.41 -7.93 5.87 -10.35 -0.06 -7.99 16 11 C 0.14 2.69 6.03 -82.64 -0.50 2.19 16 12 C 0.47 10.74 6.90 -12.15 -0.08 10.66 16 13 O -0.56 -13.98 14.64 5.33 0.08 -13.90 16 14 N -0.40 -9.18 2.59 -118.89 -0.31 -9.48 16 15 C -0.32 -7.74 9.28 -15.04 -0.14 -7.88 16 16 H 0.12 2.98 7.44 -52.49 -0.39 2.59 16 17 C 0.04 0.92 4.71 -17.44 -0.08 0.83 16 18 N -0.83 -20.14 9.78 55.51 0.54 -19.60 16 19 Si 0.93 17.98 29.63 -169.99 -5.04 12.94 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C 0.23 4.65 4.75 -6.83 -0.03 4.62 16 24 C 0.23 5.47 11.92 -20.77 -0.25 5.23 16 25 N -0.43 -10.93 17.94 42.14 0.76 -10.18 16 26 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 28 H 0.09 1.34 6.87 -51.93 -0.36 0.98 16 29 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.13 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.14 0.86 8.14 -51.92 -0.42 0.43 16 32 H 0.14 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 34 H 0.12 2.31 6.54 -51.93 -0.34 1.97 16 35 H 0.08 1.34 6.04 -51.93 -0.31 1.03 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -35.34 323.92 -6.16 -41.49 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -3.07 Total: 1.78 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.16 Total: 4.80 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.79 Total: -54.18 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.93 Total: -47.29 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.04 Total: 12.94 kcal Atomic # 16 Polarization: 36.22 SS G_CDS: -0.64 Total: 35.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.34 -6.16 -41.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328198535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.573 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds