Wall clock time and date at job start Fri Apr 10 2020 18:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38712 * 120.87218 * 2 1 4 4 N 1.32231 * 119.16316 * 180.25808 * 3 2 1 5 5 C 1.31917 * 121.05162 * 359.74057 * 4 3 2 6 6 S 1.76201 * 119.03502 * 180.02562 * 5 4 3 7 7 C 1.81394 * 104.45291 * 269.98384 * 6 5 4 8 8 O 1.42098 * 104.27656 * 26.05390 * 6 5 4 9 9 O 1.42100 * 104.27496 * 153.90944 * 6 5 4 10 10 N 1.31545 * 121.92736 * 359.97438 * 5 4 3 11 11 C 1.33200 * 120.71874 * 0.02562 * 10 5 4 12 12 C 1.48237 * 120.55974 * 179.97438 * 11 10 5 13 13 O 1.21538 * 120.00067 * 144.66999 * 12 11 10 14 14 N 1.34778 * 119.99723 * 324.94294 * 12 11 10 15 15 C 1.36682 * 119.99808 * 184.88648 * 14 12 11 16 16 H 1.08000 * 120.00142 * 15.37169 * 15 14 12 17 17 C 1.39179 * 120.00246 * 195.36861 * 15 14 12 18 18 N 1.31276 * 119.99641 * 27.79751 * 17 15 14 19 19 Si 1.86797 * 120.00560 * 207.79155 * 17 15 14 20 20 H 1.48504 * 109.47096 * 94.98678 * 19 17 15 21 21 H 1.48496 * 109.47505 * 214.99046 * 19 17 15 22 22 H 1.48499 * 109.46968 * 334.99103 * 19 17 15 23 23 C 1.46499 * 120.00355 * 4.88620 * 14 12 11 24 24 C 1.47207 * 109.46728 * 85.01917 * 23 14 12 25 25 N 5.43508 * 132.96776 * 173.68340 * 2 1 3 26 26 H 1.08997 * 109.47374 * 264.32894 * 1 2 3 27 27 H 1.09001 * 109.47157 * 24.33015 * 1 2 3 28 28 H 1.09007 * 109.47244 * 144.33047 * 1 2 3 29 29 H 1.08000 * 120.42325 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47277 * 59.99323 * 7 6 5 31 31 H 1.09000 * 109.47713 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.46716 * 300.00164 * 7 6 5 33 33 H 0.97006 * 120.00302 * 179.97438 * 18 17 15 34 34 H 1.08995 * 109.47290 * 205.01482 * 23 14 12 35 35 H 1.08995 * 109.47156 * 325.02463 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2188 1.1906 0.0000 4 7 3.5405 1.1512 -0.0052 5 6 4.1869 0.0012 -0.0052 6 16 5.9489 0.0107 -0.0116 7 6 6.3953 0.0091 -1.7698 8 8 6.2948 1.2509 0.5895 9 8 6.3081 -1.2230 0.5952 10 7 3.5546 -1.1523 0.0003 11 6 2.2234 -1.1985 0.0058 12 6 1.5145 -2.5004 0.0115 13 8 0.4722 -2.6220 0.6246 14 7 2.0287 -3.5506 -0.6587 15 6 1.3272 -4.7210 -0.7371 16 1 0.2764 -4.7385 -0.4881 17 6 1.9669 -5.8903 -1.1379 18 7 3.2530 -6.0417 -0.9225 19 14 0.9956 -7.2443 -1.9820 20 1 1.1147 -7.0945 -3.4547 21 1 1.5328 -8.5671 -1.5739 22 1 -0.4331 -7.1475 -1.5886 23 6 3.3395 -3.4377 -1.3032 24 6 4.3961 -3.7285 -0.3204 25 7 5.2115 -3.9529 0.4376 26 1 -0.3634 -0.1015 1.0226 27 1 -0.3633 0.9364 -0.4234 28 1 -0.3634 -0.8349 -0.5993 29 1 1.7000 2.1379 -0.0004 30 1 5.9818 0.8958 -2.2504 31 1 7.4807 0.0152 -1.8692 32 1 5.9914 -0.8842 -2.2463 33 1 3.6989 -6.8568 -1.2014 34 1 3.4025 -4.1500 -2.1258 35 1 3.4694 -2.4261 -1.6876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328198535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:53 Heat of formation + Delta-G solvation = -20.718572 kcal Electronic energy + Delta-G solvation = -25952.509698 eV Core-core repulsion = 22079.044451 eV Total energy + Delta-G solvation = -3873.465247 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.50786 -40.34065 -38.21067 -37.67754 -37.06915 -36.10638 -35.20669 -34.79319 -33.76205 -30.44770 -29.40207 -29.15417 -27.64533 -25.89026 -24.38264 -22.40763 -20.23428 -19.84783 -19.56198 -19.00805 -18.13487 -17.77575 -17.42951 -16.77175 -16.58840 -16.31933 -15.91575 -15.80559 -15.54812 -14.99531 -14.75812 -14.58679 -14.12770 -13.99162 -13.95126 -13.86094 -13.38008 -13.25124 -13.18586 -13.13365 -13.07697 -13.01747 -12.88123 -12.41577 -12.27469 -12.11669 -12.09054 -11.83888 -11.76533 -11.20743 -11.13490 -10.68509 -10.36433 -10.08562 -8.54718 -6.02386 -1.09766 -0.83151 -0.41157 1.33063 1.49063 1.55664 1.61872 1.66524 2.01205 2.22162 2.31815 2.45108 2.59143 2.83387 2.89179 2.96789 3.38212 3.48550 3.55027 3.58997 3.70888 3.72314 4.05299 4.17722 4.32093 4.51188 4.69664 4.73221 4.85717 4.88538 4.92857 5.30923 5.39501 5.49370 5.83236 6.22619 6.41136 6.92616 7.13299 7.28523 7.70490 8.48471 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.005569 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.251556 B = 5026.616949 C = 6429.985201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.089 4.089 3 C 0.141 3.859 4 N -0.441 5.441 5 C -0.242 4.242 6 S 2.499 3.501 7 C -0.609 4.609 8 O -0.945 6.945 9 O -0.940 6.940 10 N -0.438 5.438 11 C 0.105 3.895 12 C 0.471 3.529 13 O -0.594 6.594 14 N -0.412 5.412 15 C -0.353 4.353 16 H 0.097 0.903 17 C 0.013 3.987 18 N -0.865 5.865 19 Si 0.995 3.005 20 H -0.253 1.253 21 H -0.286 1.286 22 H -0.270 1.270 23 C 0.230 3.770 24 C 0.250 3.750 25 N -0.474 5.474 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.235 0.765 30 H 0.166 0.834 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.283 0.717 34 H 0.123 0.877 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 14.263 -10.496 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.095 4.095 3 C -0.028 4.028 4 N -0.155 5.155 5 C -0.588 4.588 6 S 2.673 3.327 7 C -0.765 4.765 8 O -0.941 6.941 9 O -0.937 6.937 10 N -0.154 5.154 11 C -0.042 4.042 12 C 0.260 3.740 13 O -0.479 6.479 14 N -0.128 5.128 15 C -0.480 4.480 16 H 0.115 0.885 17 C -0.194 4.194 18 N -0.500 5.500 19 Si 0.817 3.183 20 H -0.177 1.177 21 H -0.211 1.211 22 H -0.194 1.194 23 C 0.104 3.896 24 C -0.068 4.068 25 N -0.154 5.154 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.252 0.748 30 H 0.184 0.816 31 H 0.189 0.811 32 H 0.169 0.831 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.933 13.663 -8.340 16.274 hybrid contribution -2.078 -1.133 -0.396 2.400 sum 0.855 12.530 -8.735 15.298 Atomic orbital electron populations 1.20857 0.86182 1.04954 1.03932 1.22343 1.01168 0.93047 0.92899 1.24242 0.88793 0.99343 0.90432 1.68458 1.11457 1.27206 1.08361 1.36838 1.26502 0.88306 1.07144 1.06055 0.71380 0.73706 0.81569 1.29949 1.14911 1.14684 1.16915 1.93558 1.79716 1.44730 1.76110 1.93709 1.79220 1.44957 1.75779 1.68721 1.09863 1.28889 1.07976 1.21985 0.89846 0.95720 0.96698 1.17724 0.87627 0.84154 0.84489 1.90613 1.26351 1.84007 1.46972 1.43688 1.15220 1.10919 1.43000 1.19821 0.94820 0.85584 1.47745 0.88484 1.26198 0.96713 1.00109 0.96352 1.70055 1.11656 1.29129 1.39129 0.84903 0.78278 0.75846 0.79223 1.17748 1.21147 1.19420 1.18856 0.76780 1.02770 0.91197 1.28929 0.93371 0.90252 0.94297 1.80892 1.12828 1.12228 1.09439 0.89962 0.86189 0.91626 0.74841 0.81614 0.81063 0.83118 0.90656 0.85907 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 8.76 71.24 0.62 -1.80 16 2 C -0.09 -2.55 5.94 -19.41 -0.12 -2.66 16 3 C 0.14 3.17 11.00 84.75 0.93 4.10 16 4 N -0.44 -12.18 10.07 -197.53 -1.99 -14.17 16 5 C -0.24 -7.69 7.37 180.92 1.33 -6.36 16 6 S 2.50 69.14 5.92 -56.49 -0.33 68.80 16 7 C -0.61 -7.96 10.79 113.37 1.22 -6.74 16 8 O -0.94 -29.80 17.71 -127.65 -2.26 -32.06 16 9 O -0.94 -35.70 17.11 -127.65 -2.18 -37.88 16 10 N -0.44 -16.54 5.87 -186.65 -1.10 -17.64 16 11 C 0.11 4.05 6.03 41.93 0.25 4.30 16 12 C 0.47 22.03 6.90 86.90 0.60 22.62 16 13 O -0.59 -30.57 14.64 -3.83 -0.06 -30.62 16 14 N -0.41 -19.66 2.59 -648.33 -1.68 -21.34 16 15 C -0.35 -17.86 9.28 84.16 0.78 -17.08 16 16 H 0.10 5.18 7.44 -2.91 -0.02 5.16 16 17 C 0.01 0.62 4.71 85.00 0.40 1.02 16 18 N -0.86 -42.68 9.78 21.70 0.21 -42.47 16 19 Si 1.00 37.37 29.63 68.60 2.03 39.40 16 20 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 21 H -0.29 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 23 C 0.23 9.55 4.75 84.58 0.40 9.96 16 24 C 0.25 11.94 11.92 89.45 1.07 13.00 16 25 N -0.47 -24.87 17.94 20.00 0.36 -24.51 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.12 1.58 8.07 -2.39 -0.02 1.56 16 28 H 0.06 1.92 6.87 -2.38 -0.02 1.90 16 29 H 0.24 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.17 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.28 13.17 8.31 -92.70 -0.77 12.40 16 34 H 0.12 4.90 6.54 -2.39 -0.02 4.88 16 35 H 0.11 3.79 6.04 -2.39 -0.01 3.78 16 Total: -1.00 -82.94 323.92 1.67 -81.27 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.16 Total: 10.84 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 7.50 Total: 20.36 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -4.19 Total: -120.11 kcal Atomic # 8 Polarization: -96.06 SS G_CDS: -4.50 Total: -100.56 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Atomic # 16 Polarization: 69.14 SS G_CDS: -0.33 Total: 68.80 kcal Total: -82.94 1.67 -81.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328198535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.553 kcal (2) G-P(sol) polarization free energy of solvation -82.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds