Wall clock time and date at job start Fri Apr 10 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48500 * 109.47270 * 90.00031 * 3 2 1 5 5 H 1.48495 * 109.47363 * 210.00372 * 3 2 1 6 6 H 1.48500 * 109.46966 * 330.00418 * 3 2 1 7 7 C 1.37872 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00530 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00214 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47547 * 179.97438 * 9 7 2 11 11 N 1.39884 * 125.74341 * 94.53589 * 10 9 7 12 12 C 1.30312 * 109.20951 * 180.02562 * 11 10 9 13 13 C 1.41466 * 108.16916 * 359.97438 * 12 11 10 14 14 C 1.46751 * 126.51643 * 179.97438 * 13 12 11 15 15 O 1.21593 * 119.99946 * 180.02562 * 14 13 12 16 16 O 1.34823 * 119.99768 * 0.03213 * 14 13 12 17 17 C 1.34768 * 125.73793 * 274.23448 * 10 9 7 18 18 N 1.38485 * 126.43706 * 359.97438 * 17 10 9 19 19 C 1.34774 * 119.99964 * 78.07280 * 18 17 10 20 20 O 1.21273 * 119.99922 * 4.52422 * 19 18 17 21 21 C 1.50698 * 120.00098 * 184.52471 * 19 18 17 22 22 H 1.09003 * 110.49812 * 317.25491 * 21 19 18 23 23 C 1.54086 * 110.56400 * 79.99629 * 21 19 18 24 24 O 1.45709 * 104.00724 * 118.57643 * 23 21 19 25 25 C 1.33777 * 109.47532 * 359.97438 * 24 23 21 26 26 O 1.21504 * 123.06999 * 179.97438 * 25 24 23 27 27 N 1.34000 * 113.85435 * 0.02562 * 25 24 23 28 28 H 0.96996 * 119.99884 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47231 * 299.99891 * 9 7 2 30 30 H 1.09000 * 109.47321 * 59.99587 * 9 7 2 31 31 H 1.07995 * 125.91722 * 179.97438 * 12 11 10 32 32 H 0.96701 * 117.00505 * 179.97438 * 16 14 13 33 33 H 0.96994 * 119.99751 * 258.07391 * 18 17 10 34 34 H 1.09003 * 110.52214 * 237.20468 * 23 21 19 35 35 H 1.08997 * 110.52707 * 359.94302 * 23 21 19 36 36 H 0.97003 * 125.55937 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0000 -2.5753 -0.0010 11 7 4.3566 -3.3160 -1.1328 12 6 4.7450 -4.5036 -0.7630 13 6 4.6538 -4.5786 0.6467 14 6 4.9920 -5.7358 1.4834 15 8 4.8675 -5.6700 2.6911 16 8 5.4409 -6.8719 0.9128 17 6 4.1866 -3.3441 1.0900 18 7 3.9545 -2.9764 2.4048 19 6 2.6963 -2.9585 2.8874 20 8 1.7764 -3.3424 2.1967 21 6 2.4324 -2.4614 4.2854 22 1 3.1828 -2.8470 4.9756 23 6 2.4090 -0.9210 4.3166 24 8 1.0602 -0.5978 4.7632 25 6 0.3757 -1.7286 4.9695 26 8 -0.7789 -1.7451 5.3476 27 7 1.0801 -2.8413 4.7219 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6800 -0.8912 30 1 3.8753 -0.6803 0.8888 31 1 5.0788 -5.2938 -1.4191 32 1 5.6511 -7.6072 1.5047 33 1 4.6975 -2.7318 2.9784 34 1 3.1467 -0.5418 5.0238 35 1 2.5892 -0.5157 3.3210 36 1 0.7517 -3.7492 4.8149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:35 Heat of formation + Delta-G solvation = -100.063371 kcal Electronic energy + Delta-G solvation = -28468.832042 eV Core-core repulsion = 24149.173275 eV Total energy + Delta-G solvation = -4319.658767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80582 -41.25009 -39.46305 -39.03122 -36.96359 -35.85758 -34.89590 -34.51861 -33.91317 -32.02341 -30.38048 -29.03031 -28.10271 -25.11786 -23.88091 -22.70740 -22.30001 -21.57937 -20.70824 -19.79297 -18.34515 -18.06348 -17.79853 -17.46170 -17.21288 -16.81027 -16.13890 -15.94158 -15.38380 -14.95233 -14.85625 -14.63029 -14.31323 -14.18607 -13.95041 -13.65115 -13.48199 -13.43447 -13.12159 -12.64610 -12.40495 -12.33202 -11.45912 -11.30985 -11.16658 -10.91424 -10.80274 -10.58569 -10.48515 -10.30698 -10.19073 -9.77878 -9.62650 -9.27845 -8.95999 -8.87761 -8.39431 -6.31838 -4.38769 1.42334 2.24269 2.45640 2.46704 2.71779 2.89445 3.01687 3.09163 3.11271 3.17375 3.35628 3.49944 3.60833 4.00723 4.10345 4.38785 4.53191 4.83962 4.99543 5.02660 5.17163 5.26066 5.41155 5.47332 5.93207 6.00486 6.16780 6.33967 6.60324 6.71717 6.78741 7.07791 7.13790 7.27130 7.30919 7.89706 8.12206 8.13824 8.17480 8.20544 8.81390 9.18436 10.79685 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.009934 B = 0.006711 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.891579 B = 4171.418938 C = 6312.461962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.085 3.915 3 Si 0.861 3.139 4 H -0.270 1.270 5 H -0.264 1.264 6 H -0.277 1.277 7 C -0.549 4.549 8 H 0.093 0.907 9 C 0.223 3.777 10 N -0.299 5.299 11 N -0.275 5.275 12 C 0.092 3.908 13 C -0.300 4.300 14 C 0.568 3.432 15 O -0.535 6.535 16 O -0.515 6.515 17 C 0.385 3.615 18 N -0.655 5.655 19 C 0.511 3.489 20 O -0.457 6.457 21 C 0.087 3.913 22 H 0.129 0.871 23 C 0.052 3.948 24 O -0.317 6.317 25 C 0.656 3.344 26 O -0.519 6.519 27 N -0.709 5.709 28 H 0.271 0.729 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.194 0.806 32 H 0.408 0.592 33 H 0.417 0.583 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.789 -6.574 7.908 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.121 4.121 3 Si 0.687 3.313 4 H -0.195 1.195 5 H -0.189 1.189 6 H -0.202 1.202 7 C -0.587 4.587 8 H 0.111 0.889 9 C 0.105 3.895 10 N -0.077 5.077 11 N -0.096 5.096 12 C -0.095 4.095 13 C -0.316 4.316 14 C 0.414 3.586 15 O -0.426 6.426 16 O -0.326 6.326 17 C 0.156 3.844 18 N -0.311 5.311 19 C 0.294 3.706 20 O -0.323 6.323 21 C -0.024 4.024 22 H 0.147 0.853 23 C -0.024 4.024 24 O -0.226 6.226 25 C 0.409 3.591 26 O -0.403 6.403 27 N -0.381 5.381 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.210 0.790 32 H 0.265 0.735 33 H 0.256 0.744 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 12.822 -4.975 6.663 15.282 hybrid contribution 0.971 -0.472 1.103 1.543 sum 13.793 -5.447 7.766 16.740 Atomic orbital electron populations 1.69853 1.06057 1.27451 1.47081 1.24766 0.94748 0.98369 0.94202 0.87106 0.80586 0.84526 0.79118 1.19511 1.18864 1.20162 1.21107 0.86848 0.96261 1.54471 0.88940 1.20263 0.97714 0.72460 0.99102 1.49548 1.42596 1.13298 1.02259 1.77289 1.19785 1.05306 1.07202 1.23903 0.97134 0.95507 0.92917 1.18786 1.25753 0.93019 0.93999 1.19489 0.72383 0.81329 0.85420 1.90835 1.52480 1.83592 1.15726 1.84580 1.78467 1.24176 1.45408 1.17489 0.96072 0.89171 0.81670 1.42225 1.09478 1.71401 1.08008 1.20566 0.82251 0.79215 0.88614 1.90908 1.42180 1.41608 1.57634 1.22139 0.88528 0.96872 0.94811 0.85303 1.24309 0.82765 0.90962 1.04355 1.87310 1.25562 1.29514 1.80219 1.18362 0.84764 0.79438 0.76551 1.91065 1.12826 1.85149 1.51270 1.45603 1.12209 1.09705 1.70601 0.91888 0.92144 0.94201 0.78967 0.73479 0.74424 0.86268 0.86511 0.71686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.65 13.96 55.43 0.77 -24.88 16 2 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.86 18.92 27.47 -169.99 -4.67 14.25 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.55 -14.45 9.42 -34.44 -0.32 -14.78 16 8 H 0.09 2.89 7.37 -52.48 -0.39 2.51 16 9 C 0.22 4.76 5.14 -5.19 -0.03 4.73 16 10 N -0.30 -5.93 3.58 -61.12 -0.22 -6.15 16 11 N -0.27 -5.26 12.47 30.88 0.39 -4.87 16 12 C 0.09 1.45 11.86 -16.97 -0.20 1.24 16 13 C -0.30 -4.86 6.15 -104.86 -0.64 -5.51 16 14 C 0.57 8.14 8.31 34.17 0.28 8.42 16 15 O -0.54 -8.34 17.08 -19.34 -0.33 -8.67 16 16 O -0.52 -5.48 13.28 -40.83 -0.54 -6.03 16 17 C 0.39 6.73 6.48 -153.42 -0.99 5.73 16 18 N -0.65 -9.33 4.52 -11.08 -0.05 -9.38 16 19 C 0.51 8.29 6.91 -10.99 -0.08 8.22 16 20 O -0.46 -10.13 15.31 5.56 0.09 -10.05 16 21 C 0.09 1.04 4.18 -68.19 -0.28 0.75 16 22 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.05 0.62 7.87 37.72 0.30 0.92 16 24 O -0.32 -5.39 11.09 -37.85 -0.42 -5.81 16 25 C 0.66 11.93 9.16 53.71 0.49 12.42 16 26 O -0.52 -11.30 18.04 -19.11 -0.34 -11.64 16 27 N -0.71 -10.22 5.63 -59.36 -0.33 -10.55 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.06 1.30 7.20 -51.93 -0.37 0.93 16 30 H 0.04 0.76 7.57 -51.93 -0.39 0.36 16 31 H 0.19 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.41 2.35 9.11 45.56 0.42 2.77 16 33 H 0.42 4.00 8.82 -40.82 -0.36 3.64 16 34 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.12 1.61 7.72 -51.93 -0.40 1.21 16 36 H 0.44 5.69 8.96 -40.82 -0.37 5.32 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -39.45 333.54 -4.52 -43.97 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -2.30 Total: 10.46 kcal Atomic # 6 Polarization: 25.91 SS G_CDS: -1.58 Total: 24.33 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.56 Total: -55.83 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.55 Total: -42.20 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.67 Total: 14.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -39.45 -4.52 -43.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.096 kcal (2) G-P(sol) polarization free energy of solvation -39.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds