Wall clock time and date at job start Fri Apr 10 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48500 * 109.47270 * 90.00031 * 3 2 1 5 5 H 1.48495 * 109.47363 * 210.00372 * 3 2 1 6 6 H 1.48500 * 109.46966 * 330.00418 * 3 2 1 7 7 C 1.37872 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00530 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00214 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47547 * 179.97438 * 9 7 2 11 11 N 1.39884 * 125.74341 * 94.53589 * 10 9 7 12 12 C 1.30312 * 109.20951 * 180.02562 * 11 10 9 13 13 C 1.41466 * 108.16916 * 359.97438 * 12 11 10 14 14 C 1.46751 * 126.51643 * 179.97438 * 13 12 11 15 15 O 1.21593 * 119.99946 * 180.02562 * 14 13 12 16 16 O 1.34823 * 119.99768 * 0.03213 * 14 13 12 17 17 C 1.34768 * 125.73793 * 274.23448 * 10 9 7 18 18 N 1.38485 * 126.43706 * 359.97438 * 17 10 9 19 19 C 1.34774 * 119.99964 * 78.07280 * 18 17 10 20 20 O 1.21273 * 119.99922 * 4.52422 * 19 18 17 21 21 C 1.50698 * 120.00098 * 184.52471 * 19 18 17 22 22 H 1.09003 * 110.49812 * 317.25491 * 21 19 18 23 23 C 1.54086 * 110.56400 * 79.99629 * 21 19 18 24 24 O 1.45709 * 104.00724 * 118.57643 * 23 21 19 25 25 C 1.33777 * 109.47532 * 359.97438 * 24 23 21 26 26 O 1.21504 * 123.06999 * 179.97438 * 25 24 23 27 27 N 1.34000 * 113.85435 * 0.02562 * 25 24 23 28 28 H 0.96996 * 119.99884 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47231 * 299.99891 * 9 7 2 30 30 H 1.09000 * 109.47321 * 59.99587 * 9 7 2 31 31 H 1.07995 * 125.91722 * 179.97438 * 12 11 10 32 32 H 0.96701 * 117.00505 * 179.97438 * 16 14 13 33 33 H 0.96994 * 119.99751 * 258.07391 * 18 17 10 34 34 H 1.09003 * 110.52214 * 237.20468 * 23 21 19 35 35 H 1.08997 * 110.52707 * 359.94302 * 23 21 19 36 36 H 0.97003 * 125.55937 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0000 -2.5753 -0.0010 11 7 4.3566 -3.3160 -1.1328 12 6 4.7450 -4.5036 -0.7630 13 6 4.6538 -4.5786 0.6467 14 6 4.9920 -5.7358 1.4834 15 8 4.8675 -5.6700 2.6911 16 8 5.4409 -6.8719 0.9128 17 6 4.1866 -3.3441 1.0900 18 7 3.9545 -2.9764 2.4048 19 6 2.6963 -2.9585 2.8874 20 8 1.7764 -3.3424 2.1967 21 6 2.4324 -2.4614 4.2854 22 1 3.1828 -2.8470 4.9756 23 6 2.4090 -0.9210 4.3166 24 8 1.0602 -0.5978 4.7632 25 6 0.3757 -1.7286 4.9695 26 8 -0.7789 -1.7451 5.3476 27 7 1.0801 -2.8413 4.7219 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6800 -0.8912 30 1 3.8753 -0.6803 0.8888 31 1 5.0788 -5.2938 -1.4191 32 1 5.6511 -7.6072 1.5047 33 1 4.6975 -2.7318 2.9784 34 1 3.1467 -0.5418 5.0238 35 1 2.5892 -0.5157 3.3210 36 1 0.7517 -3.7492 4.8149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:34 Heat of formation + Delta-G solvation = -136.300206 kcal Electronic energy + Delta-G solvation = -28470.403389 eV Core-core repulsion = 24149.173275 eV Total energy + Delta-G solvation = -4321.230114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.05621 -42.54369 -40.57330 -40.36409 -38.39328 -36.89298 -36.18343 -35.79133 -35.67054 -33.79101 -31.59636 -30.28901 -29.75745 -26.31832 -25.31989 -24.15916 -23.59477 -22.84598 -21.96094 -21.12019 -19.62994 -19.30317 -19.10529 -18.97563 -18.64885 -18.07427 -17.38788 -17.23434 -16.61328 -16.46935 -16.17960 -16.08561 -15.68637 -15.37828 -15.22781 -15.14826 -14.76012 -14.59375 -14.51675 -14.20965 -13.92712 -13.49119 -13.14512 -12.65327 -12.40781 -12.37681 -12.15033 -12.08127 -12.02772 -11.82266 -11.61700 -11.40450 -10.96488 -10.89740 -10.52684 -10.36870 -9.76073 -8.37244 -6.50150 0.13476 0.98713 1.18768 1.21525 1.29201 1.34737 1.41769 1.47608 1.64765 1.91884 2.18990 2.24655 2.39863 2.51329 2.93306 3.01461 3.25576 3.67729 3.72912 3.97678 4.08332 4.15565 4.36259 4.40673 4.46722 4.64846 4.87229 4.91545 5.16176 5.46114 5.60279 5.70001 5.75069 6.01572 6.15607 6.16306 6.55372 6.64069 6.84613 6.99066 7.12670 7.17753 8.78897 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.009934 B = 0.006711 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.891579 B = 4171.418938 C = 6312.461962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.021 3.979 3 Si 0.937 3.063 4 H -0.243 1.243 5 H -0.234 1.234 6 H -0.287 1.287 7 C -0.540 4.540 8 H 0.027 0.973 9 C 0.231 3.769 10 N -0.325 5.325 11 N -0.314 5.314 12 C 0.105 3.895 13 C -0.306 4.306 14 C 0.574 3.426 15 O -0.548 6.548 16 O -0.503 6.503 17 C 0.376 3.624 18 N -0.637 5.637 19 C 0.508 3.492 20 O -0.529 6.529 21 C 0.096 3.904 22 H 0.199 0.801 23 C 0.045 3.955 24 O -0.338 6.338 25 C 0.650 3.350 26 O -0.570 6.570 27 N -0.699 5.699 28 H 0.268 0.732 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.432 0.568 33 H 0.441 0.559 34 H 0.189 0.811 35 H 0.096 0.904 36 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.069 -6.561 9.287 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.167 1.167 5 H -0.157 1.157 6 H -0.213 1.213 7 C -0.578 4.578 8 H 0.045 0.955 9 C 0.112 3.888 10 N -0.103 5.103 11 N -0.135 5.135 12 C -0.081 4.081 13 C -0.322 4.322 14 C 0.420 3.580 15 O -0.440 6.440 16 O -0.316 6.316 17 C 0.147 3.853 18 N -0.295 5.295 19 C 0.293 3.707 20 O -0.400 6.400 21 C -0.013 4.013 22 H 0.216 0.784 23 C -0.029 4.029 24 O -0.248 6.248 25 C 0.403 3.597 26 O -0.458 6.458 27 N -0.371 5.371 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.248 0.752 32 H 0.294 0.706 33 H 0.285 0.715 34 H 0.206 0.794 35 H 0.114 0.886 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 17.238 -5.018 8.065 19.682 hybrid contribution -0.281 -0.731 0.589 0.979 sum 16.957 -5.749 8.654 19.887 Atomic orbital electron populations 1.70079 1.08810 1.28466 1.49965 1.25823 0.95439 1.03185 0.93414 0.85910 0.79779 0.77861 0.80729 1.16695 1.15679 1.21298 1.21097 0.89679 0.93680 1.53381 0.95508 1.19984 0.94066 0.74301 1.00445 1.49338 1.44507 1.13234 1.03242 1.77224 1.21586 1.06819 1.07848 1.24561 0.95050 0.95079 0.93419 1.19118 1.25149 0.93367 0.94562 1.19150 0.72245 0.81749 0.84818 1.90826 1.53047 1.84047 1.16118 1.84512 1.77516 1.23869 1.45713 1.17910 0.95422 0.89539 0.82396 1.42196 1.09910 1.70281 1.07153 1.21462 0.81748 0.77702 0.89801 1.90907 1.44344 1.44964 1.59807 1.22601 0.88519 0.97072 0.93100 0.78404 1.24858 0.81782 0.90803 1.05411 1.87262 1.27972 1.29430 1.80104 1.18567 0.84476 0.80357 0.76296 1.91007 1.15092 1.86059 1.53688 1.45607 1.13175 1.09120 1.69183 0.92245 0.91951 0.90853 0.75240 0.70639 0.71538 0.79385 0.88559 0.71119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.96 21.45 0.30 -58.01 16 2 C 0.02 1.17 5.47 84.65 0.46 1.63 16 3 Si 0.94 38.67 27.47 68.60 1.88 40.56 16 4 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.23 -8.46 6.54 99.48 0.65 -7.81 16 6 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -29.50 9.42 25.60 0.24 -29.25 16 8 H 0.03 1.79 7.37 -2.91 -0.02 1.77 16 9 C 0.23 9.73 5.14 85.63 0.44 10.17 16 10 N -0.32 -12.74 3.58 -347.28 -1.24 -13.99 16 11 N -0.31 -11.87 12.47 -56.23 -0.70 -12.57 16 12 C 0.11 3.14 11.86 85.71 1.02 4.15 16 13 C -0.31 -9.37 6.15 -20.02 -0.12 -9.49 16 14 C 0.57 14.83 8.31 70.05 0.58 15.41 16 15 O -0.55 -15.41 17.08 19.53 0.33 -15.07 16 16 O -0.50 -8.87 13.28 -57.35 -0.76 -9.63 16 17 C 0.38 12.64 6.48 132.54 0.86 13.50 16 18 N -0.64 -16.71 4.52 -307.35 -1.39 -18.10 16 19 C 0.51 15.90 6.91 87.66 0.61 16.51 16 20 O -0.53 -24.30 15.31 -3.01 -0.05 -24.34 16 21 C 0.10 2.00 4.18 44.50 0.19 2.19 16 22 H 0.20 1.46 8.14 -2.39 -0.02 1.44 16 23 C 0.05 0.94 7.87 72.35 0.57 1.51 16 24 O -0.34 -11.27 11.09 -47.37 -0.53 -11.80 16 25 C 0.65 23.92 9.16 129.91 1.19 25.11 16 26 O -0.57 -25.93 18.04 19.67 0.35 -25.57 16 27 N -0.70 -19.67 5.63 -573.44 -3.23 -22.90 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.06 2.60 7.20 -2.39 -0.02 2.58 16 30 H 0.07 2.58 7.57 -2.39 -0.02 2.56 16 31 H 0.23 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.43 3.25 9.11 -74.06 -0.67 2.58 16 33 H 0.44 6.72 8.82 -92.71 -0.82 5.90 16 34 H 0.19 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 2.43 7.72 -2.39 -0.02 2.42 16 36 H 0.44 11.45 8.96 -92.71 -0.83 10.62 16 Total: -1.00 -96.73 333.54 -0.16 -96.89 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -1.17 Total: 23.10 kcal Atomic # 6 Polarization: 45.40 SS G_CDS: 6.03 Total: 51.43 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -6.26 Total: -125.56 kcal Atomic # 8 Polarization: -85.77 SS G_CDS: -0.64 Total: -86.42 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.88 Total: 40.56 kcal Total: -96.73 -0.16 -96.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.414 kcal (2) G-P(sol) polarization free energy of solvation -96.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds