Wall clock time and date at job start Fri Apr 10 2020 18:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99727 * 2 1 4 4 H 1.48503 * 109.46860 * 269.99893 * 3 2 1 5 5 H 1.48501 * 109.46839 * 29.99529 * 3 2 1 6 6 H 1.48500 * 109.46906 * 149.99646 * 3 2 1 7 7 C 1.37875 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99938 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46952 * 179.97438 * 9 7 2 11 11 N 1.39889 * 125.74781 * 272.39649 * 10 9 7 12 12 C 1.30310 * 109.21153 * 180.27618 * 11 10 9 13 13 C 1.41470 * 108.16581 * 359.74524 * 12 11 10 14 14 C 1.46751 * 126.51380 * 180.02562 * 13 12 11 15 15 O 1.21591 * 120.00041 * 179.97438 * 14 13 12 16 16 O 1.34829 * 119.99925 * 359.97438 * 14 13 12 17 17 C 1.34774 * 125.73723 * 92.22083 * 10 9 7 18 18 N 1.38478 * 126.43524 * 359.97438 * 17 10 9 19 19 C 1.34775 * 120.00159 * 289.74730 * 18 17 10 20 20 O 1.21273 * 120.00192 * 355.69897 * 19 18 17 21 21 C 1.50707 * 119.99802 * 175.70698 * 19 18 17 22 22 H 1.08993 * 110.50671 * 38.71174 * 21 19 18 23 23 C 1.54088 * 110.56062 * 275.80565 * 21 19 18 24 24 O 1.45704 * 104.00627 * 241.42814 * 23 21 19 25 25 C 1.33771 * 109.47974 * 0.02562 * 24 23 21 26 26 O 1.21507 * 123.07348 * 179.97438 * 25 24 23 27 27 N 1.34002 * 113.85153 * 359.97438 * 25 24 23 28 28 H 0.96993 * 120.00575 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47023 * 60.00551 * 9 7 2 30 30 H 1.08996 * 109.47231 * 299.99997 * 9 7 2 31 31 H 1.07998 * 125.91636 * 179.76006 * 12 11 10 32 32 H 0.96701 * 117.00220 * 179.97438 * 16 14 13 33 33 H 0.97003 * 119.99458 * 109.74284 * 18 17 10 34 34 H 1.08997 * 110.52346 * 122.79919 * 23 21 19 35 35 H 1.08998 * 110.52344 * 0.05641 * 23 21 19 36 36 H 0.97005 * 125.55440 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 7 2.7696 -4.2034 -1.1331 12 6 3.5654 -5.1666 -0.7629 13 6 3.5491 -5.2338 0.6501 14 6 4.3020 -6.1741 1.4883 15 8 4.1992 -6.1261 2.6989 16 8 5.1077 -7.0913 0.9160 17 6 2.6834 -4.2380 1.0945 18 7 2.3705 -3.9480 2.4119 19 6 2.8123 -2.8054 2.9738 20 8 3.5481 -2.0689 2.3519 21 6 2.3922 -2.4433 4.3751 22 1 2.3633 -3.3312 5.0066 23 6 1.0223 -1.7380 4.3641 24 8 1.2995 -0.4203 4.9207 25 6 2.6000 -0.3271 5.2200 26 8 3.1000 0.6709 5.7000 27 7 3.3007 -1.4350 4.9422 28 1 -0.4850 0.8399 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6249 -2.5563 0.8919 31 1 4.1383 -5.8032 -1.4209 32 1 5.5835 -7.6888 1.5090 33 1 1.8332 -4.5673 2.9303 34 1 0.3107 -2.2755 4.9908 35 1 0.6456 -1.6507 3.3450 36 1 4.2521 -1.5526 5.0904 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:38 Heat of formation + Delta-G solvation = -139.798170 kcal Electronic energy + Delta-G solvation = -28418.780924 eV Core-core repulsion = 24097.399126 eV Total energy + Delta-G solvation = -4321.381797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.06044 -42.52276 -40.57050 -40.33606 -38.40076 -36.87756 -36.15844 -35.80396 -35.74339 -33.57453 -31.56967 -30.23086 -29.29315 -26.34100 -25.51368 -24.26496 -23.59856 -22.88789 -21.91289 -21.12308 -19.56711 -19.25965 -19.08401 -18.71171 -18.58099 -18.03977 -17.37138 -17.22327 -16.74616 -16.49003 -16.19787 -16.05322 -15.62202 -15.37831 -15.27338 -15.18769 -14.67232 -14.57847 -14.29827 -14.15527 -13.72991 -13.50055 -13.12641 -12.86024 -12.39077 -12.38151 -12.33855 -12.09274 -12.03538 -11.90404 -11.63716 -11.37865 -11.07912 -10.77302 -10.49679 -10.30067 -9.71959 -8.41689 -6.48933 0.18598 1.03315 1.17569 1.22971 1.24197 1.29531 1.37890 1.47392 1.62609 1.92026 2.22352 2.26856 2.42294 2.51141 2.92711 3.00978 3.25212 3.70910 3.73727 3.98550 4.11630 4.19645 4.37036 4.47022 4.66677 4.84989 4.90168 4.98254 5.50679 5.52293 5.59593 5.72354 5.72749 5.88432 6.01370 6.14836 6.56021 6.66954 6.83459 6.96120 7.19644 7.20321 8.65608 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.006360 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.745040 B = 4401.333537 C = 6339.010456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.040 3.960 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.525 4.525 8 H 0.042 0.958 9 C 0.269 3.731 10 N -0.326 5.326 11 N -0.317 5.317 12 C 0.105 3.895 13 C -0.311 4.311 14 C 0.576 3.424 15 O -0.549 6.549 16 O -0.503 6.503 17 C 0.373 3.627 18 N -0.635 5.635 19 C 0.503 3.497 20 O -0.522 6.522 21 C 0.097 3.903 22 H 0.196 0.804 23 C 0.049 3.951 24 O -0.338 6.338 25 C 0.649 3.351 26 O -0.569 6.569 27 N -0.699 5.699 28 H 0.272 0.728 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.231 0.769 32 H 0.432 0.568 33 H 0.440 0.560 34 H 0.184 0.816 35 H 0.095 0.905 36 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -16.949 8.499 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.217 1.217 7 C -0.563 4.563 8 H 0.061 0.939 9 C 0.151 3.849 10 N -0.104 5.104 11 N -0.138 5.138 12 C -0.082 4.082 13 C -0.327 4.327 14 C 0.422 3.578 15 O -0.442 6.442 16 O -0.316 6.316 17 C 0.143 3.857 18 N -0.293 5.293 19 C 0.288 3.712 20 O -0.393 6.393 21 C -0.012 4.012 22 H 0.213 0.787 23 C -0.025 4.025 24 O -0.247 6.247 25 C 0.402 3.598 26 O -0.457 6.457 27 N -0.370 5.370 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.247 0.753 32 H 0.293 0.707 33 H 0.283 0.717 34 H 0.201 0.799 35 H 0.114 0.886 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 1.672 -14.500 7.362 16.348 hybrid contribution 1.288 0.148 0.756 1.501 sum 2.960 -14.352 8.119 16.753 Atomic orbital electron populations 1.69903 1.06173 1.28354 1.50153 1.25234 0.95507 1.00981 0.94458 0.85861 0.78565 0.80665 0.78504 1.19216 1.20065 1.21698 1.21168 0.92776 0.90484 1.51905 0.93949 1.19410 0.85825 0.80490 0.99165 1.49626 1.32324 1.25658 1.02830 1.77243 1.15877 1.12422 1.08259 1.24561 0.95474 0.94618 0.93515 1.19052 1.11734 1.07454 0.94424 1.19120 0.75906 0.77933 0.84826 1.90823 1.65463 1.72051 1.15865 1.84517 1.56455 1.45147 1.45499 1.17980 0.93451 0.92077 0.82148 1.42264 1.55959 1.23641 1.07391 1.21480 0.80491 0.79784 0.89442 1.90903 1.35059 1.49716 1.63632 1.22572 0.90155 0.96870 0.91610 0.78690 1.24776 0.95574 0.78687 1.03439 1.87272 1.24039 1.37460 1.75954 1.18586 0.80700 0.83530 0.76969 1.91014 1.70830 1.32977 1.50906 1.45619 1.13166 1.13461 1.64801 0.91905 0.94133 0.92574 0.75295 0.70652 0.71655 0.79913 0.88638 0.70973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.36 13.29 21.45 0.28 -49.07 16 2 C 0.04 2.18 5.46 84.65 0.46 2.64 16 3 Si 0.94 46.45 29.54 68.60 2.03 48.48 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 7 C -0.52 -28.48 8.17 25.60 0.21 -28.27 16 8 H 0.04 2.54 7.38 -2.91 -0.02 2.52 16 9 C 0.27 12.67 6.01 85.63 0.51 13.19 16 10 N -0.33 -13.38 3.58 -347.30 -1.24 -14.62 16 11 N -0.32 -12.42 12.47 -56.22 -0.70 -13.12 16 12 C 0.10 3.16 11.86 85.71 1.02 4.18 16 13 C -0.31 -9.50 6.15 -20.02 -0.12 -9.62 16 14 C 0.58 14.55 8.31 70.05 0.58 15.13 16 15 O -0.55 -15.04 17.08 19.54 0.33 -14.71 16 16 O -0.50 -8.63 13.28 -57.41 -0.76 -9.40 16 17 C 0.37 12.78 6.49 132.54 0.86 13.64 16 18 N -0.64 -16.98 4.43 -307.35 -1.36 -18.34 16 19 C 0.50 15.25 6.79 87.66 0.59 15.85 16 20 O -0.52 -22.58 14.88 -3.01 -0.04 -22.62 16 21 C 0.10 1.94 4.18 44.50 0.19 2.13 16 22 H 0.20 1.39 8.14 -2.39 -0.02 1.38 16 23 C 0.05 1.03 7.87 72.35 0.57 1.60 16 24 O -0.34 -10.84 11.09 -47.31 -0.52 -11.36 16 25 C 0.65 22.50 9.16 129.91 1.19 23.69 16 26 O -0.57 -24.42 18.04 19.66 0.35 -24.07 16 27 N -0.70 -18.25 5.65 -573.43 -3.24 -21.49 16 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 2.52 8.02 -2.39 -0.02 2.50 16 31 H 0.23 4.76 8.06 -2.91 -0.02 4.74 16 32 H 0.43 3.03 9.11 -74.06 -0.67 2.35 16 33 H 0.44 7.45 8.82 -92.71 -0.82 6.63 16 34 H 0.18 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 2.56 7.72 -2.39 -0.02 2.54 16 36 H 0.45 10.39 8.96 -92.70 -0.83 9.55 16 Total: -1.00 -86.35 335.88 0.07 -86.28 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -1.11 Total: 9.88 kcal Atomic # 6 Polarization: 48.10 SS G_CDS: 6.06 Total: 54.16 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -6.26 Total: -116.65 kcal Atomic # 8 Polarization: -81.52 SS G_CDS: -0.64 Total: -82.16 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -86.35 0.07 -86.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.521 kcal (2) G-P(sol) polarization free energy of solvation -86.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds