Wall clock time and date at job start Fri Apr 10 2020 18:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 S 1.65601 * 120.00132 * 265.00058 * 12 2 1 14 14 O 1.42098 * 106.40004 * 178.53448 * 13 12 2 15 15 O 1.42093 * 106.40390 * 311.45862 * 13 12 2 16 16 C 1.76204 * 107.21660 * 65.00075 * 13 12 2 17 17 C 1.38299 * 119.49326 * 89.99878 * 16 13 12 18 18 C 1.38420 * 119.28193 * 180.02562 * 17 16 13 19 19 C 1.39733 * 118.31724 * 359.97438 * 18 17 16 20 20 C 1.48454 * 120.53720 * 179.97438 * 19 18 17 21 21 N 1.34050 * 126.67540 * 359.68981 * 20 19 18 22 22 N 1.28990 * 107.26823 * 179.83854 * 21 20 19 23 23 N 1.28729 * 108.94354 * 0.42300 * 22 21 20 24 24 H 0.97001 * 125.34170 * 179.69710 * 23 22 21 25 25 N 1.28868 * 109.31662 * 359.73390 * 23 22 21 26 26 C 1.39263 * 118.93056 * 359.97438 * 19 18 17 27 27 N 1.31760 * 120.60174 * 359.72930 * 26 19 18 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 32 32 H 0.97003 * 119.99991 * 84.99836 * 12 2 1 33 33 H 1.08003 * 120.36106 * 0.02562 * 17 16 13 34 34 H 1.07999 * 120.84903 * 179.97438 * 18 17 16 35 35 H 1.07995 * 119.70001 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 16 2.4123 0.1771 2.5505 14 8 2.8124 -0.7699 3.5314 15 8 3.2437 1.2442 2.1156 16 6 0.9275 0.9146 3.1475 17 6 0.1462 0.2295 4.0601 18 6 -1.0196 0.8127 4.5258 19 6 -1.3617 2.0815 4.0506 20 6 -2.6012 2.7525 4.5167 21 7 -3.4966 2.2653 5.3871 22 7 -4.4202 3.1551 5.5248 23 7 -4.1433 4.1643 4.7751 24 1 -4.6822 4.9666 4.6927 25 7 -3.0383 3.9410 4.1507 26 6 -0.5211 2.7064 3.1329 27 7 0.5821 2.1143 2.7224 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7093 1.1619 -3.4844 32 1 2.1110 -1.6562 1.1948 33 1 0.4423 -0.7500 4.4056 34 1 -1.6489 0.3002 5.2383 35 1 -0.7733 3.6872 2.7578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:44 Heat of formation + Delta-G solvation = 91.467625 kcal Electronic energy + Delta-G solvation = -24709.582324 eV Core-core repulsion = 20873.274586 eV Total energy + Delta-G solvation = -3836.307738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.83542 -40.24974 -36.79029 -35.48645 -35.34891 -34.95262 -34.16315 -32.51749 -32.20036 -31.16204 -28.34797 -25.62854 -25.27333 -25.18553 -23.55179 -22.50086 -20.97968 -19.65191 -19.31605 -17.95495 -17.51458 -17.38985 -16.84356 -16.53978 -16.02016 -15.19060 -14.88321 -14.57053 -14.32039 -14.23326 -13.62546 -13.56702 -12.97400 -12.69068 -12.65207 -12.23296 -11.88109 -11.78540 -11.67080 -11.59555 -11.53773 -11.50625 -11.17472 -11.06906 -10.99452 -10.61276 -10.34820 -10.10676 -9.99624 -9.65424 -9.36854 -9.19590 -8.65003 -8.32085 -6.11077 -4.18510 -0.00431 0.76339 0.86238 1.04907 1.86092 1.89296 3.22388 3.26769 3.32733 3.35345 3.39103 3.68065 3.76624 4.15251 4.18644 4.37643 4.56401 4.77038 4.82998 4.91840 5.09190 5.21417 5.28520 5.43409 5.64242 5.79147 5.99420 6.24226 6.32423 6.74437 6.80456 6.99944 7.54649 7.57288 7.64883 7.75329 7.86089 8.00415 8.25870 8.84152 9.47200 10.95027 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.003700 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.127815 B = 7565.953240 C = 8780.461236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.267 3.733 3 H 0.060 0.940 4 C -0.521 4.521 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 N -1.090 6.090 13 S 2.692 3.308 14 O -0.972 6.972 15 O -0.934 6.934 16 C -0.416 4.416 17 C -0.088 4.088 18 C -0.050 4.050 19 C -0.030 4.030 20 C 0.219 3.781 21 N -0.263 5.263 22 N -0.047 5.047 23 N -0.223 5.223 24 H 0.478 0.522 25 N -0.281 5.281 26 C 0.124 3.876 27 N -0.376 5.376 28 H 0.007 0.993 29 H 0.032 0.968 30 H 0.094 0.906 31 H 0.263 0.737 32 H 0.411 0.589 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.871 4.344 14.262 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.853 5.853 13 S 2.774 3.226 14 O -0.962 6.962 15 O -0.923 6.923 16 C -0.633 4.633 17 C -0.109 4.109 18 C -0.078 4.078 19 C -0.035 4.035 20 C -0.062 4.062 21 N -0.136 5.136 22 N -0.042 5.042 23 N -0.070 5.070 24 H 0.332 0.668 25 N -0.133 5.133 26 C -0.039 4.039 27 N -0.084 5.084 28 H 0.026 0.974 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.245 0.755 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.194 5.254 14.275 17.774 hybrid contribution -1.297 -0.508 -0.535 1.492 sum -10.492 4.746 13.740 17.928 Atomic orbital electron populations 1.22260 0.98762 0.99664 1.00786 1.18712 0.90659 0.93580 0.80770 0.92258 1.21244 1.31948 1.13169 0.89707 0.91578 1.24912 0.94892 0.95011 0.99071 1.69878 1.36231 1.22542 1.23794 0.86389 0.78568 0.79615 0.82508 1.19650 1.21033 1.20838 1.55556 1.83496 1.19212 1.27059 1.02339 0.73448 0.73758 0.73061 1.93562 1.80278 1.61567 1.60758 1.93597 1.61804 1.56169 1.80747 1.34355 1.22746 1.00772 1.05428 1.21958 0.93298 1.01077 0.94566 1.21682 0.95871 0.92808 0.97476 1.18495 0.90748 0.95093 0.99213 1.23426 0.97377 0.89213 0.96196 1.76095 1.00215 1.21050 1.16256 1.78928 1.19723 0.92942 1.12595 1.47756 1.15358 1.17643 1.26212 0.66757 1.74971 1.00166 1.18361 1.19768 1.23232 0.88901 1.00028 0.91765 1.68001 1.14209 1.06888 1.19273 0.97367 0.94842 0.88702 0.92652 0.75451 0.82097 0.82694 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.29 37.16 0.35 -3.16 16 2 C 0.27 6.36 2.89 -69.08 -0.20 6.16 16 3 H 0.06 1.58 7.50 -51.93 -0.39 1.19 16 4 C -0.52 -13.56 8.76 -34.44 -0.30 -13.86 16 5 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -1.09 -21.42 5.46 -5.88 -0.03 -21.45 16 13 S 2.69 50.29 5.78 -107.50 -0.62 49.67 16 14 O -0.97 -17.84 17.25 -57.17 -0.99 -18.83 16 15 O -0.93 -20.87 17.18 -57.17 -0.98 -21.85 16 16 C -0.42 -6.95 5.78 -17.51 -0.10 -7.05 16 17 C -0.09 -1.18 9.54 -39.49 -0.38 -1.56 16 18 C -0.05 -0.59 9.84 -38.96 -0.38 -0.98 16 19 C -0.03 -0.38 5.89 -104.75 -0.62 -1.00 16 20 C 0.22 2.59 7.95 -156.30 -1.24 1.35 16 21 N -0.26 -3.10 12.31 32.15 0.40 -2.70 16 22 N -0.05 -0.46 13.47 60.35 0.81 0.36 16 23 N -0.22 -1.61 7.90 60.35 0.48 -1.14 16 24 H 0.48 1.06 8.96 -340.37 -3.05 -2.00 16 25 N -0.28 -2.86 12.11 32.17 0.39 -2.47 16 26 C 0.12 1.79 10.87 -17.20 -0.19 1.60 16 27 N -0.38 -6.56 9.69 -12.18 -0.12 -6.68 16 28 H 0.01 0.15 6.61 -51.93 -0.34 -0.19 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.41 7.10 8.83 -34.47 -0.30 6.79 16 33 H 0.16 1.76 7.60 -52.48 -0.40 1.36 16 34 H 0.16 1.45 7.97 -52.49 -0.42 1.03 16 35 H 0.17 2.13 7.90 -52.49 -0.41 1.71 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -34.03 325.15 -8.92 -42.95 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.60 Total: 2.26 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.16 Total: -16.91 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 2.55 Total: -57.70 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.97 Total: -40.68 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 50.29 SS G_CDS: -0.62 Total: 49.67 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.03 -8.92 -42.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.419 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds