Wall clock time and date at job start Fri Apr 10 2020 18:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 S 1.65601 * 120.00132 * 265.00058 * 12 2 1 14 14 O 1.42098 * 106.40004 * 178.53448 * 13 12 2 15 15 O 1.42093 * 106.40390 * 311.45862 * 13 12 2 16 16 C 1.76204 * 107.21660 * 65.00075 * 13 12 2 17 17 C 1.38299 * 119.49326 * 89.99878 * 16 13 12 18 18 C 1.38420 * 119.28193 * 180.02562 * 17 16 13 19 19 C 1.39733 * 118.31724 * 359.97438 * 18 17 16 20 20 C 1.48454 * 120.53720 * 179.97438 * 19 18 17 21 21 N 1.34050 * 126.67540 * 359.68981 * 20 19 18 22 22 N 1.28990 * 107.26823 * 179.83854 * 21 20 19 23 23 N 1.28729 * 108.94354 * 0.42300 * 22 21 20 24 24 H 0.97001 * 125.34170 * 179.69710 * 23 22 21 25 25 N 1.28868 * 109.31662 * 359.73390 * 23 22 21 26 26 C 1.39263 * 118.93056 * 359.97438 * 19 18 17 27 27 N 1.31760 * 120.60174 * 359.72930 * 26 19 18 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 32 32 H 0.97003 * 119.99991 * 84.99836 * 12 2 1 33 33 H 1.08003 * 120.36106 * 0.02562 * 17 16 13 34 34 H 1.07999 * 120.84903 * 179.97438 * 18 17 16 35 35 H 1.07995 * 119.70001 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 16 2.4123 0.1771 2.5505 14 8 2.8124 -0.7699 3.5314 15 8 3.2437 1.2442 2.1156 16 6 0.9275 0.9146 3.1475 17 6 0.1462 0.2295 4.0601 18 6 -1.0196 0.8127 4.5258 19 6 -1.3617 2.0815 4.0506 20 6 -2.6012 2.7525 4.5167 21 7 -3.4966 2.2653 5.3871 22 7 -4.4202 3.1551 5.5248 23 7 -4.1433 4.1643 4.7751 24 1 -4.6822 4.9666 4.6927 25 7 -3.0383 3.9410 4.1507 26 6 -0.5211 2.7064 3.1329 27 7 0.5821 2.1143 2.7224 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7093 1.1619 -3.4844 32 1 2.1110 -1.6562 1.1948 33 1 0.4423 -0.7500 4.4056 34 1 -1.6489 0.3002 5.2383 35 1 -0.7733 3.6872 2.7578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:44 Heat of formation + Delta-G solvation = 63.036915 kcal Electronic energy + Delta-G solvation = -24710.815172 eV Core-core repulsion = 20873.274586 eV Total energy + Delta-G solvation = -3837.540586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.62311 -41.35590 -38.33958 -37.27061 -36.93675 -35.81487 -35.02623 -34.11615 -33.57241 -32.17041 -30.14951 -27.25238 -26.57974 -26.11786 -24.55294 -23.45462 -22.83239 -20.79018 -20.35724 -19.41651 -18.98526 -18.28808 -17.95849 -17.80388 -17.55009 -17.00145 -16.23206 -15.96785 -15.43787 -15.32311 -15.17974 -14.57864 -14.52608 -14.04032 -14.02798 -13.53552 -13.46622 -13.24385 -13.12257 -13.04805 -12.82245 -12.69150 -12.54296 -12.43864 -12.35326 -12.27549 -12.21518 -11.97434 -11.10341 -11.03533 -10.83042 -10.57226 -10.41444 -10.09922 -8.11054 -6.25269 -1.08095 -0.60238 -0.01363 0.03499 0.94408 1.27196 1.46703 1.49339 1.60152 2.02940 2.33399 2.39740 2.47515 2.76222 2.89604 2.98927 3.19251 3.58070 3.70079 3.83489 3.94483 4.00552 4.26959 4.46002 4.55397 4.62536 4.81221 4.90306 5.00915 5.13830 5.22493 5.50461 5.61079 5.76808 6.05892 6.13296 6.41829 6.45769 6.85570 6.95619 7.44018 8.94583 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.003700 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.127815 B = 7565.953240 C = 8780.461236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.540 4.540 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.963 3.037 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.284 1.284 12 N -1.091 6.091 13 S 2.709 3.291 14 O -0.970 6.970 15 O -0.980 6.980 16 C -0.440 4.440 17 C -0.078 4.078 18 C -0.041 4.041 19 C -0.018 4.018 20 C 0.204 3.796 21 N -0.277 5.277 22 N -0.048 5.048 23 N -0.193 5.193 24 H 0.497 0.503 25 N -0.282 5.282 26 C 0.114 3.886 27 N -0.414 5.414 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.265 0.735 32 H 0.421 0.579 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 3.699 15.445 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.580 4.580 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.854 5.854 13 S 2.796 3.204 14 O -0.959 6.959 15 O -0.970 6.970 16 C -0.660 4.660 17 C -0.099 4.099 18 C -0.069 4.069 19 C -0.023 4.023 20 C -0.077 4.077 21 N -0.150 5.150 22 N -0.042 5.042 23 N -0.045 5.045 24 H 0.357 0.643 25 N -0.135 5.135 26 C -0.050 4.050 27 N -0.123 5.123 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.257 0.743 33 H 0.205 0.795 34 H 0.205 0.795 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.829 4.572 15.456 19.418 hybrid contribution -0.935 -0.170 -0.760 1.216 sum -11.763 4.401 14.696 19.332 Atomic orbital electron populations 1.22049 0.97757 1.00008 1.00322 1.18329 0.91301 0.91844 0.81649 0.95914 1.21635 1.32039 1.13434 0.90885 0.91247 1.25695 0.95103 0.95687 1.01900 1.70007 1.37148 1.23716 1.24388 0.85432 0.78120 0.78601 0.79001 1.18857 1.20400 1.21039 1.55294 1.83648 1.19743 1.26682 1.01439 0.73558 0.72892 0.72491 1.93552 1.80816 1.61498 1.60066 1.93536 1.64416 1.57509 1.81526 1.33642 1.22824 1.01604 1.07887 1.22273 0.92934 1.01703 0.92981 1.22038 0.95363 0.92347 0.97185 1.18576 0.90596 0.95248 0.97917 1.23242 0.97469 0.89836 0.97115 1.76078 1.00498 1.21844 1.16555 1.78886 1.19299 0.93209 1.12842 1.47823 1.14423 1.17777 1.24433 0.64263 1.74944 1.00858 1.17855 1.19819 1.23430 0.88485 1.00650 0.92405 1.67876 1.15909 1.07655 1.20846 0.95539 0.93902 0.91401 0.92619 0.74251 0.79510 0.79529 0.79631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.46 9.29 71.98 0.67 -5.79 16 2 C 0.27 13.36 2.89 44.25 0.13 13.49 16 3 H 0.02 1.28 7.50 -2.39 -0.02 1.27 16 4 C -0.54 -28.46 8.76 25.60 0.22 -28.23 16 5 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.91 -50.95 11.32 21.45 0.24 -50.70 16 8 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 N -1.09 -43.25 5.46 -172.52 -0.94 -44.19 16 13 S 2.71 102.30 5.78 -56.49 -0.33 101.97 16 14 O -0.97 -34.89 17.25 -128.00 -2.21 -37.10 16 15 O -0.98 -45.60 17.18 -128.00 -2.20 -47.80 16 16 C -0.44 -14.52 5.78 84.70 0.49 -14.03 16 17 C -0.08 -1.92 9.54 22.33 0.21 -1.71 16 18 C -0.04 -0.87 9.84 22.67 0.22 -0.64 16 19 C -0.02 -0.43 5.89 -19.95 -0.12 -0.54 16 20 C 0.20 4.37 7.95 137.38 1.09 5.46 16 21 N -0.28 -5.80 12.31 -52.18 -0.64 -6.44 16 22 N -0.05 -0.80 13.47 37.02 0.50 -0.30 16 23 N -0.19 -2.27 7.90 37.02 0.29 -1.97 16 24 H 0.50 0.75 8.96 -347.54 -3.12 -2.36 16 25 N -0.28 -5.09 12.11 -52.13 -0.63 -5.73 16 26 C 0.11 3.22 10.87 84.95 0.92 4.15 16 27 N -0.41 -14.57 9.69 -192.46 -1.87 -16.44 16 28 H 0.03 1.06 6.61 -2.39 -0.02 1.05 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 3.48 6.07 -2.38 -0.01 3.47 16 31 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.42 14.46 8.83 -96.74 -0.85 13.60 16 33 H 0.19 3.52 7.60 -2.91 -0.02 3.50 16 34 H 0.19 2.76 7.97 -2.91 -0.02 2.73 16 35 H 0.19 4.49 7.90 -2.91 -0.02 4.46 16 Total: -1.00 -73.93 325.15 -4.24 -78.17 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -2.78 Total: 12.84 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.29 Total: -26.53 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -3.05 Total: -125.77 kcal Atomic # 8 Polarization: -80.49 SS G_CDS: -4.41 Total: -84.90 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 102.30 SS G_CDS: -0.33 Total: 101.97 kcal Total: -73.93 -4.24 -78.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.203 kcal (2) G-P(sol) polarization free energy of solvation -73.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds