Wall clock time and date at job start Fri Apr 10 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46571 * 2 1 4 4 C 1.50693 * 109.47147 * 119.99600 * 2 1 3 5 5 H 1.08007 * 120.00085 * 114.36740 * 4 2 1 6 6 C 1.37879 * 120.00222 * 294.37377 * 4 2 1 7 7 N 1.31511 * 120.00213 * 156.61522 * 6 4 2 8 8 Si 1.86799 * 119.99984 * 336.88492 * 6 4 2 9 9 H 1.48492 * 109.47227 * 179.72643 * 8 6 4 10 10 H 1.48502 * 109.47298 * 299.73179 * 8 6 4 11 11 H 1.48503 * 109.46897 * 59.72819 * 8 6 4 12 12 N 1.46501 * 109.47304 * 240.00050 * 2 1 3 13 13 S 1.65597 * 120.00119 * 94.99862 * 12 2 1 14 14 O 1.42097 * 106.40466 * 178.53816 * 13 12 2 15 15 O 1.42106 * 106.40293 * 311.45873 * 13 12 2 16 16 C 1.76199 * 107.21809 * 64.99798 * 13 12 2 17 17 C 1.38304 * 119.48847 * 90.00103 * 16 13 12 18 18 C 1.38425 * 119.27948 * 179.97438 * 17 16 13 19 19 C 1.39726 * 118.31715 * 0.02562 * 18 17 16 20 20 C 1.48466 * 120.53765 * 179.97438 * 19 18 17 21 21 N 1.34049 * 126.67136 * 359.68135 * 20 19 18 22 22 N 1.28981 * 107.26969 * 179.83689 * 21 20 19 23 23 N 1.28736 * 108.94315 * 0.43964 * 22 21 20 24 24 H 0.96992 * 125.34384 * 179.70506 * 23 22 21 25 25 N 1.28868 * 109.31150 * 359.71840 * 23 22 21 26 26 C 1.39264 * 118.93028 * 359.97438 * 19 18 17 27 27 N 1.31745 * 120.60641 * 359.73372 * 26 19 18 28 28 H 1.08994 * 109.47111 * 293.09227 * 1 2 3 29 29 H 1.09005 * 109.47011 * 53.09523 * 1 2 3 30 30 H 1.09000 * 109.46622 * 173.08998 * 1 2 3 31 31 H 0.97002 * 119.99608 * 355.21123 * 7 6 4 32 32 H 0.96992 * 119.99716 * 274.99773 * 12 2 1 33 33 H 1.07999 * 120.36325 * 0.02562 * 17 16 13 34 34 H 1.08007 * 120.84390 * 179.97438 * 18 17 16 35 35 H 1.08011 * 119.69480 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4794 7 7 1.8026 -0.9536 3.5396 8 14 1.4650 1.6533 2.6648 9 1 1.2390 1.9726 4.0973 10 1 2.6329 2.4221 2.1645 11 1 0.2586 2.0191 1.8798 12 7 2.0184 -0.6906 -1.1962 13 16 2.4123 0.1772 -2.5505 14 8 2.8778 -0.7634 -3.5085 15 8 1.3247 1.0593 -2.7922 16 6 3.7928 1.1910 -2.1371 17 6 5.0742 0.7049 -2.3224 18 6 6.1556 1.5053 -1.9967 19 6 5.9056 2.7829 -1.4891 20 6 7.0286 3.6823 -1.1231 21 7 8.3374 3.4080 -1.2173 22 7 8.9775 4.4489 -0.8044 23 7 8.1277 5.3491 -0.4512 24 1 8.3517 6.2251 -0.1002 25 7 6.9329 4.9036 -0.6368 26 6 4.5859 3.1989 -1.3320 27 7 3.5882 2.4040 -1.6612 28 1 -0.3633 0.4030 0.9453 29 1 -0.3633 0.6171 -0.8218 30 1 -0.3632 -1.0202 -0.1236 31 1 1.9021 -1.9130 3.4365 32 1 2.1111 -1.6561 -1.1948 33 1 5.2296 -0.2881 -2.7177 34 1 7.1671 1.1510 -2.1308 35 1 4.3784 4.1842 -0.9410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:48 Heat of formation + Delta-G solvation = 90.245928 kcal Electronic energy + Delta-G solvation = -24877.463558 eV Core-core repulsion = 21041.102844 eV Total energy + Delta-G solvation = -3836.360714 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.83235 -40.27484 -36.93962 -35.67063 -35.48816 -34.96093 -34.17009 -32.55142 -32.34531 -31.19020 -28.98336 -25.63566 -25.25301 -24.77551 -23.58215 -22.53074 -20.77647 -19.68512 -19.46816 -18.23431 -17.65457 -17.50856 -16.88649 -16.77201 -16.54434 -15.34335 -14.92219 -14.33768 -14.28188 -14.27292 -13.61674 -13.47885 -13.08574 -13.00481 -12.65615 -12.43189 -12.17897 -11.85738 -11.81844 -11.67611 -11.59251 -11.54244 -11.52979 -11.20811 -11.14757 -10.46396 -10.14950 -10.01670 -9.83102 -9.77809 -9.41321 -9.30596 -8.66685 -8.31876 -6.60048 -4.21327 -0.03603 0.71396 0.79450 1.02093 1.86188 1.88324 3.21436 3.25372 3.36096 3.40503 3.52624 3.57521 3.76220 4.05906 4.09187 4.40849 4.54096 4.74206 4.81056 4.90009 5.07507 5.08141 5.17723 5.40422 5.61870 5.76268 6.00000 6.02639 6.21623 6.37111 6.64605 6.72469 7.15253 7.29439 7.47889 7.60086 7.75661 7.98073 8.25410 8.76782 9.44268 10.77377 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004882 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.375696 B = 5734.195040 C = 7246.491750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.251 3.749 3 H 0.038 0.962 4 C -0.619 4.619 5 H 0.066 0.934 6 C 0.045 3.955 7 N -0.890 5.890 8 Si 1.021 2.979 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.268 1.268 12 N -1.084 6.084 13 S 2.691 3.309 14 O -0.968 6.968 15 O -0.937 6.937 16 C -0.418 4.418 17 C -0.083 4.083 18 C -0.048 4.048 19 C -0.026 4.026 20 C 0.218 3.782 21 N -0.261 5.261 22 N -0.046 5.046 23 N -0.223 5.223 24 H 0.478 0.522 25 N -0.281 5.281 26 C 0.123 3.877 27 N -0.383 5.383 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.272 0.728 32 H 0.415 0.585 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.816 10.192 -9.328 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.146 3.854 3 H 0.056 0.944 4 C -0.657 4.657 5 H 0.084 0.916 6 C -0.163 4.163 7 N -0.522 5.522 8 Si 0.848 3.152 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.847 5.847 13 S 2.774 3.226 14 O -0.958 6.958 15 O -0.926 6.926 16 C -0.636 4.636 17 C -0.104 4.104 18 C -0.076 4.076 19 C -0.032 4.032 20 C -0.063 4.063 21 N -0.135 5.135 22 N -0.041 5.041 23 N -0.069 5.069 24 H 0.333 0.667 25 N -0.133 5.133 26 C -0.040 4.040 27 N -0.091 5.091 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.250 0.750 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.928 12.014 -8.826 17.911 hybrid contribution 1.707 -1.103 -0.364 2.064 sum 11.634 10.911 -9.191 18.409 Atomic orbital electron populations 1.22549 0.98235 1.00847 1.00766 1.18871 0.91203 0.92499 0.82876 0.94436 1.22061 1.41690 1.11311 0.90669 0.91589 1.25603 0.93135 1.05669 0.91891 1.70851 1.42985 1.06512 1.31890 0.84367 0.78059 0.76120 0.76661 1.20719 1.20641 1.19352 1.55380 1.79824 1.18587 1.30893 1.02364 0.73698 0.73346 0.73188 1.93573 1.82496 1.60904 1.58799 1.93588 1.48940 1.66489 1.83594 1.34206 1.16761 1.05257 1.07360 1.21950 0.91583 1.01295 0.95577 1.21703 1.00891 0.91477 0.93571 1.18483 0.90549 0.93060 1.01107 1.23398 0.92121 0.90232 1.00540 1.76095 1.02983 1.17016 1.17370 1.78931 1.19711 0.94004 1.11445 1.47750 1.00800 1.17275 1.41110 0.66741 1.74952 1.06193 1.12732 1.19391 1.23203 0.86533 0.99948 0.94350 1.67944 1.34264 1.01914 1.05015 0.92130 0.93989 0.93177 0.91838 0.75049 0.82008 0.82511 0.80782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.24 37.16 0.34 -3.27 16 2 C 0.25 5.72 2.36 -69.08 -0.16 5.56 16 3 H 0.04 0.88 6.40 -51.93 -0.33 0.54 16 4 C -0.62 -16.14 8.97 -34.44 -0.31 -16.45 16 5 H 0.07 1.80 8.05 -52.48 -0.42 1.38 16 6 C 0.05 1.23 5.19 -17.82 -0.09 1.14 16 7 N -0.89 -25.89 13.70 55.43 0.76 -25.13 16 8 Si 1.02 24.16 26.44 -169.99 -4.50 19.67 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -5.92 6.15 56.52 0.35 -5.57 16 12 N -1.08 -20.82 5.46 -5.88 -0.03 -20.86 16 13 S 2.69 48.52 5.71 -107.50 -0.61 47.91 16 14 O -0.97 -17.34 17.25 -57.17 -0.99 -18.33 16 15 O -0.94 -19.20 17.24 -57.17 -0.99 -20.18 16 16 C -0.42 -7.08 6.69 -17.50 -0.12 -7.20 16 17 C -0.08 -1.16 9.54 -39.49 -0.38 -1.54 16 18 C -0.05 -0.60 9.84 -38.96 -0.38 -0.98 16 19 C -0.03 -0.36 5.89 -104.74 -0.62 -0.97 16 20 C 0.22 2.69 7.95 -156.31 -1.24 1.45 16 21 N -0.26 -3.20 12.31 32.16 0.40 -2.81 16 22 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 23 N -0.22 -1.69 7.90 60.35 0.48 -1.21 16 24 H 0.48 1.18 8.96 -340.38 -3.05 -1.87 16 25 N -0.28 -2.97 12.11 32.17 0.39 -2.58 16 26 C 0.12 1.82 10.87 -17.21 -0.19 1.63 16 27 N -0.38 -6.73 10.06 -12.18 -0.12 -6.85 16 28 H 0.06 1.36 5.47 -51.93 -0.28 1.08 16 29 H 0.04 0.86 7.77 -51.93 -0.40 0.46 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 32 H 0.41 7.16 8.82 -34.47 -0.30 6.86 16 33 H 0.16 1.86 7.60 -52.49 -0.40 1.46 16 34 H 0.16 1.55 7.97 -52.48 -0.42 1.14 16 35 H 0.18 2.15 7.90 -52.48 -0.41 1.73 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -34.41 324.35 -8.32 -42.73 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.66 Total: 3.04 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -3.15 Total: -20.63 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 2.68 Total: -59.08 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.97 Total: -38.51 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -4.50 Total: 19.67 kcal Atomic # 16 Polarization: 48.52 SS G_CDS: -0.61 Total: 47.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.41 -8.32 -42.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.974 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds