Wall clock time and date at job start Fri Apr 10 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46571 * 2 1 4 4 C 1.50693 * 109.47147 * 119.99600 * 2 1 3 5 5 H 1.08007 * 120.00085 * 114.36740 * 4 2 1 6 6 C 1.37879 * 120.00222 * 294.37377 * 4 2 1 7 7 N 1.31511 * 120.00213 * 156.61522 * 6 4 2 8 8 Si 1.86799 * 119.99984 * 336.88492 * 6 4 2 9 9 H 1.48492 * 109.47227 * 179.72643 * 8 6 4 10 10 H 1.48502 * 109.47298 * 299.73179 * 8 6 4 11 11 H 1.48503 * 109.46897 * 59.72819 * 8 6 4 12 12 N 1.46501 * 109.47304 * 240.00050 * 2 1 3 13 13 S 1.65597 * 120.00119 * 94.99862 * 12 2 1 14 14 O 1.42097 * 106.40466 * 178.53816 * 13 12 2 15 15 O 1.42106 * 106.40293 * 311.45873 * 13 12 2 16 16 C 1.76199 * 107.21809 * 64.99798 * 13 12 2 17 17 C 1.38304 * 119.48847 * 90.00103 * 16 13 12 18 18 C 1.38425 * 119.27948 * 179.97438 * 17 16 13 19 19 C 1.39726 * 118.31715 * 0.02562 * 18 17 16 20 20 C 1.48466 * 120.53765 * 179.97438 * 19 18 17 21 21 N 1.34049 * 126.67136 * 359.68135 * 20 19 18 22 22 N 1.28981 * 107.26969 * 179.83689 * 21 20 19 23 23 N 1.28736 * 108.94315 * 0.43964 * 22 21 20 24 24 H 0.96992 * 125.34384 * 179.70506 * 23 22 21 25 25 N 1.28868 * 109.31150 * 359.71840 * 23 22 21 26 26 C 1.39264 * 118.93028 * 359.97438 * 19 18 17 27 27 N 1.31745 * 120.60641 * 359.73372 * 26 19 18 28 28 H 1.08994 * 109.47111 * 293.09227 * 1 2 3 29 29 H 1.09005 * 109.47011 * 53.09523 * 1 2 3 30 30 H 1.09000 * 109.46622 * 173.08998 * 1 2 3 31 31 H 0.97002 * 119.99608 * 355.21123 * 7 6 4 32 32 H 0.96992 * 119.99716 * 274.99773 * 12 2 1 33 33 H 1.07999 * 120.36325 * 0.02562 * 17 16 13 34 34 H 1.08007 * 120.84390 * 179.97438 * 18 17 16 35 35 H 1.08011 * 119.69480 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4794 7 7 1.8026 -0.9536 3.5396 8 14 1.4650 1.6533 2.6648 9 1 1.2390 1.9726 4.0973 10 1 2.6329 2.4221 2.1645 11 1 0.2586 2.0191 1.8798 12 7 2.0184 -0.6906 -1.1962 13 16 2.4123 0.1772 -2.5505 14 8 2.8778 -0.7634 -3.5085 15 8 1.3247 1.0593 -2.7922 16 6 3.7928 1.1910 -2.1371 17 6 5.0742 0.7049 -2.3224 18 6 6.1556 1.5053 -1.9967 19 6 5.9056 2.7829 -1.4891 20 6 7.0286 3.6823 -1.1231 21 7 8.3374 3.4080 -1.2173 22 7 8.9775 4.4489 -0.8044 23 7 8.1277 5.3491 -0.4512 24 1 8.3517 6.2251 -0.1002 25 7 6.9329 4.9036 -0.6368 26 6 4.5859 3.1989 -1.3320 27 7 3.5882 2.4040 -1.6612 28 1 -0.3633 0.4030 0.9453 29 1 -0.3633 0.6171 -0.8218 30 1 -0.3632 -1.0202 -0.1236 31 1 1.9021 -1.9130 3.4365 32 1 2.1111 -1.6561 -1.1948 33 1 5.2296 -0.2881 -2.7177 34 1 7.1671 1.1510 -2.1308 35 1 4.3784 4.1842 -0.9410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:47 Heat of formation + Delta-G solvation = 60.794746 kcal Electronic energy + Delta-G solvation = -24878.740657 eV Core-core repulsion = 21041.102844 eV Total energy + Delta-G solvation = -3837.637813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.64440 -41.37921 -38.41976 -37.40921 -36.98664 -35.84139 -35.05222 -34.34445 -33.61568 -32.20303 -30.72630 -26.78326 -26.62722 -26.14729 -24.59140 -23.49940 -22.60739 -20.94191 -20.39540 -19.93094 -19.13981 -18.39373 -18.30097 -17.95909 -17.62473 -16.93884 -16.02361 -15.93588 -15.45220 -15.28010 -15.20857 -14.86387 -14.63975 -14.28845 -14.13411 -13.88831 -13.49153 -13.40551 -13.28130 -13.16730 -12.85272 -12.72695 -12.58558 -12.44755 -12.32608 -12.28580 -11.97507 -11.67261 -11.27519 -11.08143 -10.91356 -10.48571 -10.40228 -10.31170 -8.74175 -6.34994 -1.12765 -0.66190 -0.05094 0.00115 0.91117 1.25450 1.49606 1.51007 1.69668 1.93521 2.27515 2.36183 2.47001 2.69127 2.86592 2.92876 3.00073 3.53983 3.64376 3.79532 3.89758 3.95645 4.23677 4.30895 4.41182 4.58342 4.61705 4.77347 4.83961 4.98560 5.17921 5.36985 5.49377 5.53194 5.84020 6.07254 6.24448 6.35564 6.64153 6.93462 7.36675 8.62495 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004882 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.375696 B = 5734.195040 C = 7246.491750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.253 3.747 3 H 0.039 0.961 4 C -0.612 4.612 5 H 0.043 0.957 6 C 0.001 3.999 7 N -0.924 5.924 8 Si 1.047 2.953 9 H -0.284 1.284 10 H -0.265 1.265 11 H -0.244 1.244 12 N -1.088 6.088 13 S 2.711 3.289 14 O -0.969 6.969 15 O -0.964 6.964 16 C -0.445 4.445 17 C -0.080 4.080 18 C -0.043 4.043 19 C -0.019 4.019 20 C 0.202 3.798 21 N -0.278 5.278 22 N -0.047 5.047 23 N -0.192 5.192 24 H 0.498 0.502 25 N -0.280 5.280 26 C 0.113 3.887 27 N -0.414 5.414 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.260 0.740 32 H 0.421 0.579 33 H 0.185 0.815 34 H 0.186 0.814 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.198 11.877 -10.107 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.146 3.854 3 H 0.057 0.943 4 C -0.651 4.651 5 H 0.062 0.938 6 C -0.201 4.201 7 N -0.558 5.558 8 Si 0.869 3.131 9 H -0.210 1.210 10 H -0.190 1.190 11 H -0.168 1.168 12 N -0.849 5.849 13 S 2.797 3.203 14 O -0.958 6.958 15 O -0.954 6.954 16 C -0.664 4.664 17 C -0.101 4.101 18 C -0.072 4.072 19 C -0.024 4.024 20 C -0.078 4.078 21 N -0.151 5.151 22 N -0.042 5.042 23 N -0.044 5.044 24 H 0.358 0.642 25 N -0.132 5.132 26 C -0.051 4.051 27 N -0.123 5.123 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.257 0.743 33 H 0.202 0.798 34 H 0.203 0.797 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 11.293 13.672 -9.633 20.181 hybrid contribution 1.461 -1.555 -0.160 2.140 sum 12.754 12.117 -9.793 20.135 Atomic orbital electron populations 1.22525 0.97546 1.01533 1.00900 1.18647 0.91695 0.92300 0.82720 0.94335 1.22217 1.40382 1.10373 0.92111 0.93834 1.26683 0.92884 1.08508 0.91989 1.70955 1.45962 1.06010 1.32880 0.84045 0.79611 0.72547 0.76931 1.21008 1.19004 1.16826 1.55236 1.80446 1.19155 1.30108 1.01547 0.73487 0.72820 0.72462 1.93565 1.82545 1.61207 1.58508 1.93545 1.50953 1.66979 1.83927 1.33742 1.17074 1.05599 1.10014 1.22262 0.90813 1.02344 0.94673 1.22045 1.01788 0.90944 0.92375 1.18594 0.90524 0.93466 0.99837 1.23231 0.91981 0.90753 1.01862 1.76079 1.02905 1.17961 1.18119 1.78888 1.19705 0.94058 1.11564 1.47821 0.99706 1.17676 1.39162 0.64198 1.74916 1.07212 1.12172 1.18948 1.23498 0.86731 1.00417 0.94461 1.67846 1.35772 1.02487 1.06237 0.92817 0.92714 0.92609 0.93079 0.74310 0.79804 0.79706 0.79047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.10 9.24 71.98 0.66 -6.43 16 2 C 0.25 11.36 2.36 44.24 0.10 11.46 16 3 H 0.04 1.76 6.40 -2.39 -0.02 1.74 16 4 C -0.61 -32.05 8.97 25.60 0.23 -31.82 16 5 H 0.04 2.43 8.05 -2.91 -0.02 2.40 16 6 C 0.00 0.08 5.19 84.66 0.44 0.52 16 7 N -0.92 -54.64 13.70 21.45 0.29 -54.34 16 8 Si 1.05 47.79 26.44 68.60 1.81 49.61 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.24 -10.15 6.15 99.48 0.61 -9.54 16 12 N -1.09 -41.15 5.46 -172.52 -0.94 -42.10 16 13 S 2.71 95.52 5.71 -56.49 -0.32 95.20 16 14 O -0.97 -33.55 17.25 -128.00 -2.21 -35.76 16 15 O -0.96 -38.97 17.24 -128.00 -2.21 -41.18 16 16 C -0.45 -14.57 6.69 84.70 0.57 -14.00 16 17 C -0.08 -2.08 9.54 22.33 0.21 -1.86 16 18 C -0.04 -0.98 9.84 22.67 0.22 -0.76 16 19 C -0.02 -0.46 5.89 -19.94 -0.12 -0.58 16 20 C 0.20 4.51 7.95 137.38 1.09 5.61 16 21 N -0.28 -6.13 12.31 -52.18 -0.64 -6.77 16 22 N -0.05 -0.83 13.47 37.02 0.50 -0.34 16 23 N -0.19 -2.34 7.90 37.02 0.29 -2.05 16 24 H 0.50 0.87 8.96 -347.55 -3.12 -2.24 16 25 N -0.28 -5.15 12.11 -52.13 -0.63 -5.78 16 26 C 0.11 3.15 10.87 84.95 0.92 4.07 16 27 N -0.41 -14.10 10.06 -192.46 -1.94 -16.03 16 28 H 0.05 2.34 5.47 -2.39 -0.01 2.33 16 29 H 0.05 2.18 7.77 -2.38 -0.02 2.17 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 32 H 0.42 14.43 8.82 -96.76 -0.85 13.58 16 33 H 0.18 3.80 7.60 -2.91 -0.02 3.78 16 34 H 0.19 3.09 7.97 -2.91 -0.02 3.07 16 35 H 0.19 4.38 7.90 -2.91 -0.02 4.36 16 Total: -1.00 -73.25 324.35 -4.56 -77.81 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -2.91 Total: 15.52 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.34 Total: -33.80 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -3.07 Total: -127.41 kcal Atomic # 8 Polarization: -72.52 SS G_CDS: -4.41 Total: -76.93 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.81 Total: 49.61 kcal Atomic # 16 Polarization: 95.52 SS G_CDS: -0.32 Total: 95.20 kcal Total: -73.25 -4.56 -77.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.607 kcal (2) G-P(sol) polarization free energy of solvation -73.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds