Wall clock time and date at job start Fri Apr 10 2020 18:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50692 * 109.47116 * 239.99971 * 2 1 3 5 5 H 1.08002 * 120.00253 * 240.00056 * 4 2 1 6 6 C 1.37879 * 120.00257 * 59.99738 * 4 2 1 7 7 N 1.31510 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00040 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47100 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47100 * 120.00309 * 8 6 4 11 11 H 1.48506 * 109.46753 * 239.99972 * 8 6 4 12 12 N 1.46499 * 109.47235 * 119.99803 * 2 1 3 13 13 S 1.65605 * 120.00061 * 265.00073 * 12 2 1 14 14 O 1.42101 * 106.40084 * 311.45979 * 13 12 2 15 15 O 1.42098 * 106.40195 * 178.54256 * 13 12 2 16 16 C 1.76201 * 107.21874 * 64.99650 * 13 12 2 17 17 C 1.38310 * 120.35748 * 90.00368 * 16 13 12 18 18 N 1.31881 * 121.01566 * 180.28111 * 17 16 13 19 19 C 1.31753 * 121.85351 * 359.46566 * 18 17 16 20 20 C 1.39259 * 120.59921 * 0.53335 * 19 18 17 21 21 C 1.48464 * 120.53389 * 179.72254 * 20 19 18 22 22 N 1.34051 * 126.67401 * 179.70690 * 21 20 19 23 23 N 1.28985 * 107.26866 * 179.89169 * 22 21 20 24 24 N 1.28739 * 108.94215 * 0.37529 * 23 22 21 25 25 H 0.96998 * 125.34019 * 179.78713 * 24 23 22 26 26 N 1.28877 * 109.31505 * 359.76027 * 24 23 22 27 27 C 1.38423 * 120.36363 * 270.02386 * 16 13 12 28 28 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47409 * 300.00217 * 1 2 3 30 30 H 1.09002 * 109.47294 * 59.99917 * 1 2 3 31 31 H 0.97003 * 120.00260 * 180.02562 * 7 6 4 32 32 H 0.97001 * 120.00242 * 85.00129 * 12 2 1 33 33 H 1.08002 * 119.48813 * 359.97438 * 17 16 13 34 34 H 1.07995 * 119.70309 * 180.26853 * 19 18 17 35 35 H 1.08003 * 120.83763 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1464 -2.2870 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1465 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1962 13 16 2.4122 0.1773 2.5505 14 8 3.2436 1.2444 2.1155 15 8 2.8124 -0.7696 3.5315 16 6 0.9275 0.9149 3.1474 17 6 0.1326 0.2459 4.0604 18 7 -0.9840 0.7834 4.5115 19 6 -1.3867 1.9771 4.1254 20 6 -0.6417 2.7142 3.2084 21 6 -1.0999 4.0565 2.7697 22 7 -0.4808 4.8700 1.9026 23 7 -1.2027 5.9332 1.7927 24 7 -2.2334 5.8192 2.5556 25 1 -2.9319 6.4844 2.6581 26 7 -2.1918 4.6825 3.1614 27 6 0.5438 2.1700 2.7074 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.7088 1.1613 -3.4844 32 1 2.1110 -1.6561 1.1949 33 1 0.4283 -0.7338 4.4054 34 1 -2.3049 2.3858 4.5205 35 1 1.1451 2.7145 1.9944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:51 Heat of formation + Delta-G solvation = 89.257544 kcal Electronic energy + Delta-G solvation = -25116.347192 eV Core-core repulsion = 21279.943618 eV Total energy + Delta-G solvation = -3836.403574 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.61735 -40.28170 -36.85103 -35.53750 -35.42561 -34.77106 -33.97978 -32.63606 -32.22565 -31.04039 -28.39004 -25.42555 -25.24207 -25.05062 -23.65726 -22.46673 -21.02854 -19.59339 -18.99687 -17.83622 -17.50036 -17.30097 -16.78690 -16.67058 -16.01217 -15.31614 -15.17955 -14.56929 -14.23326 -14.18065 -13.66178 -13.32298 -12.83692 -12.73833 -12.47005 -12.27231 -11.83697 -11.69736 -11.64691 -11.59984 -11.38022 -11.35923 -11.29059 -11.19487 -11.02501 -10.71089 -10.40457 -10.17753 -10.10924 -9.74392 -9.25949 -9.21658 -8.68772 -8.36270 -6.15296 -4.22803 0.24946 0.68270 0.90564 1.03310 2.04324 2.12404 3.24789 3.32992 3.35341 3.38525 3.39835 3.65272 3.95302 4.13142 4.24929 4.34473 4.52251 4.63913 4.78921 5.08768 5.17394 5.21915 5.27217 5.41266 5.70124 5.85000 6.17805 6.24311 6.26725 6.67699 6.72047 6.92437 7.50081 7.55005 7.60390 7.79169 7.94907 7.97879 8.20720 8.79841 9.43489 10.90795 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.004903 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.610959 B = 5709.388613 C = 7343.807113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.266 3.734 3 H 0.053 0.947 4 C -0.521 4.521 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 N -1.094 6.094 13 S 2.693 3.307 14 O -0.951 6.951 15 O -0.974 6.974 16 C -0.725 4.725 17 C 0.216 3.784 18 N -0.494 5.494 19 C 0.186 3.814 20 C -0.093 4.093 21 C 0.226 3.774 22 N -0.255 5.255 23 N -0.043 5.043 24 N -0.228 5.228 25 H 0.476 0.524 26 N -0.294 5.294 27 C 0.077 3.923 28 H 0.036 0.964 29 H 0.007 0.993 30 H 0.095 0.905 31 H 0.264 0.736 32 H 0.412 0.588 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 6.113 11.883 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.561 4.561 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.856 5.856 13 S 2.777 3.223 14 O -0.941 6.941 15 O -0.964 6.964 16 C -0.810 4.810 17 C 0.057 3.943 18 N -0.203 5.203 19 C 0.026 3.974 20 C -0.099 4.099 21 C -0.055 4.055 22 N -0.127 5.127 23 N -0.038 5.038 24 N -0.073 5.073 25 H 0.330 0.670 26 N -0.146 5.146 27 C 0.049 3.951 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.246 0.754 33 H 0.195 0.805 34 H 0.188 0.812 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.643 6.662 12.383 16.004 hybrid contribution -0.651 -0.050 -1.263 1.422 sum -8.294 6.613 11.120 15.367 Atomic orbital electron populations 1.22311 0.98667 1.00068 1.00741 1.18679 0.90656 0.93279 0.81173 0.92895 1.21217 1.32003 1.13235 0.89618 0.91521 1.24917 0.94840 0.94990 0.99123 1.69866 1.36149 1.22522 1.23911 0.86382 0.78588 0.79621 0.82461 1.19628 1.21004 1.20827 1.55537 1.83623 1.19292 1.27183 1.02017 0.73513 0.73772 0.72955 1.93602 1.62487 1.56628 1.81347 1.93540 1.80879 1.61629 1.60340 1.32390 1.27545 1.07451 1.13589 1.22753 0.86656 0.98081 0.86776 1.67926 1.15330 1.11238 1.25785 1.23147 0.96968 0.88538 0.88708 1.18216 0.98317 0.90452 1.02929 1.23270 0.89597 0.96783 0.95823 1.76227 1.22567 0.98003 1.15944 1.78987 0.94808 1.18256 1.11752 1.47721 1.19650 1.13401 1.26571 0.67014 1.74845 1.21887 0.96610 1.21293 1.21444 0.91643 0.91166 0.90885 0.94523 0.97387 0.88672 0.92587 0.75366 0.80473 0.81217 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.29 37.15 0.35 -3.12 16 2 C 0.27 6.11 2.89 -69.09 -0.20 5.91 16 3 H 0.05 1.33 7.50 -51.93 -0.39 0.94 16 4 C -0.52 -13.29 8.76 -34.44 -0.30 -13.60 16 5 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.90 11.32 55.43 0.63 -23.27 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -1.09 -20.68 5.46 -5.89 -0.03 -20.71 16 13 S 2.69 47.54 5.73 -107.50 -0.62 46.92 16 14 O -0.95 -19.77 16.69 -57.17 -0.95 -20.72 16 15 O -0.97 -17.48 17.30 -57.17 -0.99 -18.47 16 16 C -0.72 -11.35 5.07 -39.49 -0.20 -11.55 16 17 C 0.22 3.02 10.68 -17.50 -0.19 2.83 16 18 N -0.49 -6.75 10.35 -12.98 -0.13 -6.88 16 19 C 0.19 2.34 10.87 -17.21 -0.19 2.16 16 20 C -0.09 -1.32 5.89 -104.75 -0.62 -1.94 16 21 C 0.23 3.14 7.95 -156.30 -1.24 1.90 16 22 N -0.25 -3.91 12.31 32.16 0.40 -3.51 16 23 N -0.04 -0.53 13.47 60.35 0.81 0.28 16 24 N -0.23 -2.01 7.90 60.35 0.48 -1.54 16 25 H 0.48 1.66 8.96 -340.36 -3.05 -1.39 16 26 N -0.29 -3.28 12.11 32.17 0.39 -2.89 16 27 C 0.08 1.23 8.37 -38.96 -0.33 0.90 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.14 6.17 -51.93 -0.32 -0.18 16 30 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.41 6.95 8.83 -34.47 -0.30 6.64 16 33 H 0.18 2.08 7.62 -52.49 -0.40 1.68 16 34 H 0.17 1.65 7.90 -52.49 -0.41 1.24 16 35 H 0.17 2.78 7.61 -52.48 -0.40 2.38 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -32.99 323.50 -8.74 -41.73 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.56 Total: 3.77 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -3.01 Total: -14.92 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 2.54 Total: -58.52 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -1.94 Total: -39.19 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 47.54 SS G_CDS: -0.62 Total: 46.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.99 -8.74 -41.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.987 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds