Wall clock time and date at job start Fri Apr 10 2020 18:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46803 * 2 1 4 4 C 1.50697 * 109.47014 * 239.99835 * 2 1 3 5 5 H 1.08005 * 120.00007 * 239.99546 * 4 2 1 6 6 C 1.37881 * 120.00077 * 60.00417 * 4 2 1 7 7 N 1.31513 * 119.99971 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47088 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46969 * 119.99886 * 8 6 4 11 11 H 1.48497 * 109.46782 * 239.99981 * 8 6 4 12 12 N 1.46498 * 109.46898 * 120.00052 * 2 1 3 13 13 S 1.65607 * 119.99890 * 262.85353 * 12 2 1 14 14 O 1.42102 * 106.40119 * 310.30023 * 13 12 2 15 15 O 1.42096 * 106.40128 * 177.37365 * 13 12 2 16 16 C 1.76207 * 107.21763 * 63.83799 * 13 12 2 17 17 C 1.38455 * 120.46499 * 243.50619 * 16 13 12 18 18 C 1.38730 * 118.50931 * 180.02562 * 17 16 13 19 19 C 1.38296 * 119.35367 * 359.97438 * 18 17 16 20 20 N 1.31727 * 120.88912 * 0.02562 * 19 18 17 21 21 C 1.32652 * 121.62503 * 359.97438 * 20 19 18 22 22 C 1.48425 * 119.72535 * 180.27547 * 21 20 19 23 23 N 1.34061 * 126.67677 * 173.15573 * 22 21 20 24 24 N 1.28990 * 107.26878 * 179.97438 * 23 22 21 25 25 N 1.28731 * 108.94414 * 359.97438 * 24 23 22 26 26 H 0.97002 * 125.33655 * 180.02562 * 25 24 23 27 27 N 1.28878 * 109.32151 * 359.72407 * 25 24 23 28 28 H 1.08999 * 109.47385 * 300.00250 * 1 2 3 29 29 H 1.09000 * 109.46782 * 60.00045 * 1 2 3 30 30 H 1.08998 * 109.47206 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00019 * 180.02562 * 7 6 4 32 32 H 0.96994 * 120.00545 * 82.85213 * 12 2 1 33 33 H 1.08004 * 120.74421 * 359.97438 * 17 16 13 34 34 H 1.07995 * 120.32104 * 180.02562 * 18 17 16 35 35 H 1.08004 * 119.55138 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1483 -2.2857 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8159 12 7 2.0183 -0.6906 1.1962 13 16 2.4625 0.1812 2.5323 14 8 3.3399 1.2002 2.0730 15 8 2.8249 -0.7663 3.5273 16 6 1.0185 0.9982 3.1257 17 6 0.9480 2.3809 3.1348 18 6 -0.2081 2.9819 3.6113 19 6 -1.2489 2.1892 4.0595 20 7 -1.1555 0.8754 4.0397 21 6 -0.0677 0.2621 3.5921 22 6 -0.0100 -1.2210 3.5832 23 7 0.9561 -1.9816 3.0490 24 7 0.6309 -3.2130 3.2533 25 7 -0.4885 -3.2499 3.8879 26 1 -0.9510 -4.0569 4.1634 27 7 -0.8953 -2.0465 4.1054 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7083 1.1608 -3.4844 32 1 2.0814 -1.6585 1.2057 33 1 1.7747 2.9783 2.7797 34 1 -0.2947 4.0582 3.6312 35 1 -2.1503 2.6537 4.4315 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:58 Heat of formation + Delta-G solvation = 119.708328 kcal Electronic energy + Delta-G solvation = -26344.036361 eV Core-core repulsion = 22508.953232 eV Total energy + Delta-G solvation = -3835.083129 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.43423 -40.20882 -36.62121 -35.46762 -35.16108 -34.35329 -33.67124 -32.67121 -32.08603 -31.02279 -28.22548 -25.41752 -25.23155 -24.88153 -23.61167 -22.17658 -20.85322 -19.41260 -18.92623 -17.65514 -17.26942 -17.11579 -16.85083 -16.49175 -15.83984 -15.21398 -14.76296 -14.50166 -14.22268 -13.90043 -13.53384 -13.39500 -12.89552 -12.60635 -12.33207 -12.04283 -11.67513 -11.57230 -11.43427 -11.26955 -11.09389 -11.02594 -10.99431 -10.96315 -10.77559 -10.55052 -10.31712 -10.19305 -10.01413 -9.68327 -9.23208 -9.09572 -8.55564 -8.16935 -6.08830 -4.14576 0.25840 0.88760 1.14860 1.24449 2.21730 2.24975 3.24344 3.28266 3.36252 3.40976 3.53327 3.83870 3.97315 4.32376 4.41005 4.56913 4.70645 4.83355 4.97413 5.15824 5.23867 5.29459 5.36679 5.65410 5.80489 5.89837 6.33391 6.39807 6.44042 6.79316 6.82337 7.03517 7.56739 7.62178 7.70434 7.99425 8.10745 8.14794 8.37332 8.89501 9.50951 10.97660 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.005741 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.524244 B = 4875.945888 C = 5497.871941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.267 3.733 3 H 0.049 0.951 4 C -0.514 4.514 5 H 0.067 0.933 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.283 1.283 12 N -1.079 6.079 13 S 2.697 3.303 14 O -0.965 6.965 15 O -0.958 6.958 16 C -0.687 4.687 17 C 0.024 3.976 18 C -0.178 4.178 19 C 0.145 3.855 20 N -0.469 5.469 21 C 0.305 3.695 22 C 0.197 3.803 23 N -0.232 5.232 24 N -0.032 5.032 25 N -0.230 5.230 26 H 0.476 0.524 27 N -0.252 5.252 28 H 0.003 0.997 29 H 0.093 0.907 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.417 0.583 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 -0.392 13.513 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.554 4.554 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.843 5.843 13 S 2.780 3.220 14 O -0.954 6.954 15 O -0.947 6.947 16 C -0.773 4.773 17 C -0.003 4.003 18 C -0.199 4.199 19 C -0.013 4.013 20 N -0.179 5.179 21 C 0.164 3.836 22 C -0.084 4.084 23 N -0.107 5.107 24 N -0.028 5.028 25 N -0.076 5.076 26 H 0.330 0.670 27 N -0.104 5.104 28 H 0.022 0.978 29 H 0.112 0.888 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.254 0.746 33 H 0.180 0.820 34 H 0.168 0.832 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.683 -1.063 13.932 15.084 hybrid contribution -0.543 -0.109 -0.881 1.041 sum -6.226 -1.172 13.050 14.507 Atomic orbital electron populations 1.22239 0.99046 0.99540 1.00321 1.18590 0.90433 0.93092 0.81619 0.93300 1.21281 1.31416 1.13011 0.89669 0.91517 1.24916 0.94964 0.95053 0.99062 1.69869 1.36588 1.22821 1.23684 0.86401 0.78563 0.79690 0.82535 1.19593 1.21104 1.20880 1.55458 1.83017 1.19104 1.26719 1.01957 0.73330 0.73245 0.73515 1.93562 1.60337 1.60267 1.81283 1.93546 1.81347 1.60282 1.59497 1.32391 1.22850 1.06263 1.15747 1.21452 0.98050 0.92006 0.88761 1.22391 0.94609 1.02239 1.00680 1.22999 0.98085 0.88175 0.92012 1.67537 1.23587 1.11865 1.14912 1.16986 0.88969 0.86046 0.91608 1.23050 0.90171 0.94759 1.00441 1.76062 1.20895 0.95645 1.18131 1.78941 0.99393 1.14943 1.09510 1.47796 1.15313 1.08077 1.36397 0.66955 1.74977 1.24233 0.90425 1.20798 0.97776 0.88827 0.95127 0.92760 0.74555 0.81985 0.83230 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.29 37.16 0.35 -3.22 16 2 C 0.27 6.54 2.89 -69.08 -0.20 6.34 16 3 H 0.05 1.29 7.53 -51.93 -0.39 0.90 16 4 C -0.51 -13.72 8.77 -34.44 -0.30 -14.02 16 5 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -1.08 -23.19 4.30 -5.88 -0.03 -23.21 16 13 S 2.70 54.28 4.88 -107.50 -0.52 53.76 16 14 O -0.96 -21.31 16.45 -57.17 -0.94 -22.25 16 15 O -0.96 -19.98 15.06 -57.17 -0.86 -20.84 16 16 C -0.69 -12.09 5.04 -39.12 -0.20 -12.29 16 17 C 0.02 0.34 9.66 -39.32 -0.38 -0.03 16 18 C -0.18 -2.01 10.11 -39.38 -0.40 -2.41 16 19 C 0.14 1.71 11.18 -17.57 -0.20 1.51 16 20 N -0.47 -7.28 10.29 -9.77 -0.10 -7.38 16 21 C 0.31 5.34 6.18 -82.94 -0.51 4.83 16 22 C 0.20 3.47 7.69 -156.30 -1.20 2.27 16 23 N -0.23 -4.22 5.64 32.15 0.18 -4.04 16 24 N -0.03 -0.49 13.47 60.35 0.81 0.33 16 25 N -0.23 -2.70 7.90 60.35 0.48 -2.23 16 26 H 0.48 2.84 8.96 -340.36 -3.05 -0.21 16 27 N -0.25 -3.76 12.39 32.17 0.40 -3.37 16 28 H 0.00 0.07 6.64 -51.93 -0.34 -0.27 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.42 8.62 7.39 -34.47 -0.25 8.36 16 33 H 0.16 2.14 7.44 -52.48 -0.39 1.75 16 34 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.17 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -34.88 313.07 -8.96 -43.83 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.56 Total: 4.11 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -3.14 Total: -15.44 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: 2.37 Total: -63.77 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.80 Total: -43.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 54.28 SS G_CDS: -0.52 Total: 53.76 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.88 -8.96 -43.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.542 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds