Wall clock time and date at job start Fri Apr 10 2020 18:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46803 * 2 1 4 4 C 1.50697 * 109.47014 * 239.99835 * 2 1 3 5 5 H 1.08005 * 120.00007 * 239.99546 * 4 2 1 6 6 C 1.37881 * 120.00077 * 60.00417 * 4 2 1 7 7 N 1.31513 * 119.99971 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47088 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46969 * 119.99886 * 8 6 4 11 11 H 1.48497 * 109.46782 * 239.99981 * 8 6 4 12 12 N 1.46498 * 109.46898 * 120.00052 * 2 1 3 13 13 S 1.65607 * 119.99890 * 262.85353 * 12 2 1 14 14 O 1.42102 * 106.40119 * 310.30023 * 13 12 2 15 15 O 1.42096 * 106.40128 * 177.37365 * 13 12 2 16 16 C 1.76207 * 107.21763 * 63.83799 * 13 12 2 17 17 C 1.38455 * 120.46499 * 243.50619 * 16 13 12 18 18 C 1.38730 * 118.50931 * 180.02562 * 17 16 13 19 19 C 1.38296 * 119.35367 * 359.97438 * 18 17 16 20 20 N 1.31727 * 120.88912 * 0.02562 * 19 18 17 21 21 C 1.32652 * 121.62503 * 359.97438 * 20 19 18 22 22 C 1.48425 * 119.72535 * 180.27547 * 21 20 19 23 23 N 1.34061 * 126.67677 * 173.15573 * 22 21 20 24 24 N 1.28990 * 107.26878 * 179.97438 * 23 22 21 25 25 N 1.28731 * 108.94414 * 359.97438 * 24 23 22 26 26 H 0.97002 * 125.33655 * 180.02562 * 25 24 23 27 27 N 1.28878 * 109.32151 * 359.72407 * 25 24 23 28 28 H 1.08999 * 109.47385 * 300.00250 * 1 2 3 29 29 H 1.09000 * 109.46782 * 60.00045 * 1 2 3 30 30 H 1.08998 * 109.47206 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00019 * 180.02562 * 7 6 4 32 32 H 0.96994 * 120.00545 * 82.85213 * 12 2 1 33 33 H 1.08004 * 120.74421 * 359.97438 * 17 16 13 34 34 H 1.07995 * 120.32104 * 180.02562 * 18 17 16 35 35 H 1.08004 * 119.55138 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1483 -2.2857 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8159 12 7 2.0183 -0.6906 1.1962 13 16 2.4625 0.1812 2.5323 14 8 3.3399 1.2002 2.0730 15 8 2.8249 -0.7663 3.5273 16 6 1.0185 0.9982 3.1257 17 6 0.9480 2.3809 3.1348 18 6 -0.2081 2.9819 3.6113 19 6 -1.2489 2.1892 4.0595 20 7 -1.1555 0.8754 4.0397 21 6 -0.0677 0.2621 3.5921 22 6 -0.0100 -1.2210 3.5832 23 7 0.9561 -1.9816 3.0490 24 7 0.6309 -3.2130 3.2533 25 7 -0.4885 -3.2499 3.8879 26 1 -0.9510 -4.0569 4.1634 27 7 -0.8953 -2.0465 4.1054 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7083 1.1608 -3.4844 32 1 2.0814 -1.6585 1.2057 33 1 1.7747 2.9783 2.7797 34 1 -0.2947 4.0582 3.6312 35 1 -2.1503 2.6537 4.4315 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:57 Heat of formation + Delta-G solvation = 91.252022 kcal Electronic energy + Delta-G solvation = -26345.270319 eV Core-core repulsion = 22508.953232 eV Total energy + Delta-G solvation = -3836.317087 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.59962 -41.29113 -38.23647 -37.28483 -36.79381 -35.59231 -34.81759 -34.04213 -33.79587 -32.11912 -30.08231 -27.25557 -26.51709 -26.07946 -24.74347 -23.33707 -22.74665 -20.61974 -20.36292 -19.14220 -18.81269 -18.29949 -18.16944 -17.64018 -17.55033 -17.02347 -16.22590 -15.75671 -15.40044 -15.32691 -15.07707 -14.57163 -14.51805 -14.06589 -13.90310 -13.56539 -13.30984 -13.11086 -13.05489 -13.04804 -12.83691 -12.51829 -12.38554 -12.28041 -12.21505 -12.13586 -12.09019 -11.94549 -11.38499 -11.10734 -10.81443 -10.56205 -10.24024 -9.96594 -8.12555 -6.25123 -0.89977 -0.41127 -0.16326 0.09505 1.06102 1.28261 1.44376 1.46988 1.58336 2.08260 2.24747 2.46012 2.51110 2.80827 2.84940 3.17099 3.38706 3.65079 3.79799 3.83475 4.00473 4.20490 4.27734 4.45301 4.55933 4.73385 4.87370 4.90360 4.96668 5.11401 5.39918 5.56308 5.60894 5.74214 6.02097 6.19970 6.51161 6.53269 6.86233 6.96388 7.43629 8.93308 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.005741 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.524244 B = 4875.945888 C = 5497.871941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.275 3.725 3 H 0.025 0.975 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.280 1.280 12 N -1.082 6.082 13 S 2.709 3.291 14 O -0.995 6.995 15 O -0.971 6.971 16 C -0.706 4.706 17 C 0.005 3.995 18 C -0.156 4.156 19 C 0.150 3.850 20 N -0.483 5.483 21 C 0.287 3.713 22 C 0.175 3.825 23 N -0.268 5.268 24 N -0.039 5.039 25 N -0.195 5.195 26 H 0.498 0.502 27 N -0.248 5.248 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.419 0.581 33 H 0.168 0.832 34 H 0.200 0.800 35 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.645 0.297 14.279 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.206 1.206 12 N -0.845 5.845 13 S 2.797 3.203 14 O -0.985 6.985 15 O -0.960 6.960 16 C -0.796 4.796 17 C -0.021 4.021 18 C -0.176 4.176 19 C -0.007 4.007 20 N -0.194 5.194 21 C 0.146 3.854 22 C -0.106 4.106 23 N -0.142 5.142 24 N -0.035 5.035 25 N -0.047 5.047 26 H 0.358 0.642 27 N -0.102 5.102 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.256 0.744 33 H 0.186 0.814 34 H 0.217 0.783 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.339 -0.433 14.687 16.425 hybrid contribution -0.149 -0.270 -0.971 1.018 sum -7.488 -0.703 13.716 15.643 Atomic orbital electron populations 1.21994 0.98242 0.99101 0.99992 1.18283 0.90888 0.91800 0.82114 0.95727 1.21607 1.31768 1.13257 0.91037 0.91917 1.25647 0.95113 0.95731 1.01666 1.69969 1.37153 1.23701 1.24406 0.85473 0.78156 0.78666 0.79140 1.19287 1.20410 1.20594 1.55301 1.83284 1.19159 1.26737 1.01171 0.73670 0.72646 0.72834 1.93515 1.62444 1.60805 1.81760 1.93518 1.82265 1.60920 1.59303 1.31826 1.21848 1.07605 1.18351 1.21791 0.99932 0.90977 0.89449 1.22928 0.92451 1.04624 0.97626 1.23956 0.99701 0.87002 0.90029 1.67626 1.22728 1.13789 1.15279 1.17077 0.89564 0.86155 0.92601 1.23315 0.90592 0.95491 1.01221 1.75994 1.22124 0.96519 1.19559 1.78852 1.00358 1.14166 1.10109 1.47854 1.14198 1.08385 1.34237 0.64163 1.74920 1.23783 0.90938 1.20535 0.96036 0.90966 0.95498 0.92531 0.74400 0.81428 0.78321 0.76420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.36 9.29 71.98 0.67 -5.69 16 2 C 0.27 13.82 2.89 44.25 0.13 13.95 16 3 H 0.02 1.36 7.53 -2.39 -0.02 1.34 16 4 C -0.54 -29.26 8.77 25.60 0.22 -29.04 16 5 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -50.67 11.32 21.45 0.24 -50.42 16 8 Si 0.96 42.97 29.54 68.60 2.03 44.99 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 N -1.08 -48.06 4.30 -172.52 -0.74 -48.81 16 13 S 2.71 112.39 4.88 -56.49 -0.28 112.11 16 14 O -1.00 -45.59 16.45 -128.00 -2.11 -47.69 16 15 O -0.97 -41.78 15.06 -128.00 -1.93 -43.71 16 16 C -0.71 -24.72 5.04 22.57 0.11 -24.60 16 17 C 0.00 0.13 9.66 22.44 0.22 0.35 16 18 C -0.16 -2.91 10.11 22.40 0.23 -2.68 16 19 C 0.15 2.93 11.18 84.72 0.95 3.87 16 20 N -0.48 -13.90 10.29 -184.82 -1.90 -15.80 16 21 C 0.29 9.83 6.18 41.98 0.26 10.09 16 22 C 0.17 6.13 7.69 137.36 1.06 7.18 16 23 N -0.27 -9.86 5.64 -52.20 -0.29 -10.15 16 24 N -0.04 -1.19 13.47 37.02 0.50 -0.69 16 25 N -0.19 -4.37 7.90 37.02 0.29 -4.07 16 26 H 0.50 5.09 8.96 -347.53 -3.12 1.98 16 27 N -0.25 -7.16 12.39 -52.14 -0.65 -7.81 16 28 H 0.02 0.90 6.64 -2.39 -0.02 0.89 16 29 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.42 18.00 7.39 -96.75 -0.71 17.29 16 33 H 0.17 4.33 7.44 -2.91 -0.02 4.31 16 34 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.22 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -77.25 313.07 -3.18 -80.43 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -2.64 Total: 16.76 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 4.29 Total: -25.13 kcal Atomic # 7 Polarization: -135.21 SS G_CDS: -2.55 Total: -137.77 kcal Atomic # 8 Polarization: -87.37 SS G_CDS: -4.03 Total: -91.40 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 112.39 SS G_CDS: -0.28 Total: 112.11 kcal Total: -77.25 -3.18 -80.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.686 kcal (2) G-P(sol) polarization free energy of solvation -77.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds