Wall clock time and date at job start Fri Apr 10 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47188 * 2 1 4 4 C 1.50699 * 109.46929 * 120.00080 * 2 1 3 5 5 H 1.08006 * 119.99837 * 119.99981 * 4 2 1 6 6 C 1.37872 * 120.00384 * 299.99722 * 4 2 1 7 7 N 1.31515 * 119.99626 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00061 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47108 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46592 * 120.00672 * 8 6 4 11 11 H 1.48503 * 109.47241 * 239.99986 * 8 6 4 12 12 N 1.46499 * 109.47296 * 240.00179 * 2 1 3 13 13 S 1.65599 * 120.00051 * 95.34004 * 12 2 1 14 14 O 1.42099 * 106.40271 * 310.69495 * 13 12 2 15 15 O 1.42101 * 106.40246 * 177.77666 * 13 12 2 16 16 C 1.76193 * 107.21750 * 64.23520 * 13 12 2 17 17 C 1.38469 * 120.46332 * 243.44056 * 16 13 12 18 18 C 1.38725 * 118.50689 * 180.24327 * 17 16 13 19 19 C 1.38295 * 119.35831 * 359.46120 * 18 17 16 20 20 N 1.31733 * 120.88684 * 0.25033 * 19 18 17 21 21 C 1.32655 * 121.62164 * 0.02749 * 20 19 18 22 22 C 1.48429 * 119.72287 * 179.97438 * 21 20 19 23 23 N 1.34064 * 126.67618 * 173.64391 * 22 21 20 24 24 N 1.28976 * 107.27077 * 179.97438 * 23 22 21 25 25 N 1.28737 * 108.94737 * 0.02562 * 24 23 22 26 26 H 0.96999 * 125.34185 * 180.02562 * 25 24 23 27 27 N 1.28872 * 109.31804 * 359.76741 * 25 24 23 28 28 H 1.08997 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47147 * 299.99673 * 1 2 3 30 30 H 1.08998 * 109.46565 * 59.99650 * 1 2 3 31 31 H 0.97008 * 119.99967 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99825 * 275.34806 * 12 2 1 33 33 H 1.07995 * 120.74518 * 359.97438 * 17 16 13 34 34 H 1.07999 * 120.32535 * 179.73525 * 18 17 16 35 35 H 1.08000 * 119.55719 * 180.27974 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.1464 -2.2872 3.6037 10 1 3.1466 -0.1875 4.8165 11 1 1.1661 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 16 2.4203 0.1780 -2.5476 14 8 1.3298 1.0532 -2.8011 15 8 2.9008 -0.7609 -3.4999 16 6 3.7905 1.2006 -2.1220 17 6 3.6724 2.5800 -2.1498 18 6 4.7785 3.3461 -1.8121 19 6 5.9547 2.7157 -1.4491 20 7 6.0379 1.4013 -1.4253 21 6 5.0053 0.6330 -1.7465 22 6 5.1461 -0.8440 -1.7057 23 7 4.1711 -1.7466 -1.8847 24 7 4.7055 -2.9150 -1.7717 25 7 5.9628 -2.7782 -1.5312 26 1 6.5921 -3.5052 -1.4042 27 7 6.2551 -1.5237 -1.4910 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 0.7082 1.1608 3.4844 32 1 2.1063 -1.6566 -1.1966 33 1 2.7415 3.0488 -2.4324 34 1 4.7203 4.4244 -1.8280 35 1 6.8164 3.3091 -1.1812 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:01 Heat of formation + Delta-G solvation = 90.646872 kcal Electronic energy + Delta-G solvation = -26388.710415 eV Core-core repulsion = 22552.367087 eV Total energy + Delta-G solvation = -3836.343328 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.58448 -41.26441 -38.22667 -37.24190 -36.77567 -35.58758 -34.80563 -34.05179 -33.78640 -32.10471 -30.03487 -27.21706 -26.51390 -26.06592 -24.74970 -23.33371 -22.73810 -20.61745 -20.35645 -19.16737 -18.69789 -18.27151 -18.15182 -17.73518 -17.52628 -17.04411 -16.23698 -15.74679 -15.43862 -15.20735 -15.09094 -14.57464 -14.47375 -14.02713 -13.92528 -13.56832 -13.30181 -13.16345 -13.03000 -12.97478 -12.85449 -12.46161 -12.37769 -12.27608 -12.21128 -12.13269 -12.06278 -11.96483 -11.37446 -11.09146 -10.79877 -10.57347 -10.23768 -9.96633 -8.13888 -6.26560 -0.88693 -0.38406 -0.15164 0.10742 1.07670 1.29114 1.38033 1.41061 1.50303 2.09556 2.24018 2.42176 2.51807 2.81558 2.86130 3.15014 3.39927 3.65939 3.79958 3.84438 4.01277 4.21416 4.28396 4.46346 4.57976 4.73207 4.89781 4.99604 5.15593 5.21837 5.40504 5.56780 5.60713 5.79299 6.07276 6.17822 6.52034 6.52980 6.85382 6.97226 7.42003 8.91485 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.006709 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.639109 B = 4172.429617 C = 4597.858198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.281 3.719 3 H 0.020 0.980 4 C -0.529 4.529 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.277 1.277 12 N -1.083 6.083 13 S 2.711 3.289 14 O -0.989 6.989 15 O -0.971 6.971 16 C -0.709 4.709 17 C 0.005 3.995 18 C -0.158 4.158 19 C 0.148 3.852 20 N -0.486 5.486 21 C 0.285 3.715 22 C 0.176 3.824 23 N -0.264 5.264 24 N -0.039 5.039 25 N -0.196 5.196 26 H 0.498 0.502 27 N -0.250 5.250 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.418 0.582 33 H 0.172 0.828 34 H 0.200 0.800 35 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.702 1.809 -7.326 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.175 3.825 3 H 0.037 0.963 4 C -0.568 4.568 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.845 5.845 13 S 2.799 3.201 14 O -0.979 6.979 15 O -0.960 6.960 16 C -0.799 4.799 17 C -0.022 4.022 18 C -0.179 4.179 19 C -0.009 4.009 20 N -0.197 5.197 21 C 0.144 3.856 22 C -0.105 4.105 23 N -0.139 5.139 24 N -0.035 5.035 25 N -0.048 5.048 26 H 0.358 0.642 27 N -0.104 5.104 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.256 0.744 33 H 0.189 0.811 34 H 0.217 0.783 35 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.784 1.067 -7.801 14.173 hybrid contribution 0.417 -0.267 1.277 1.370 sum 12.201 0.801 -6.524 13.859 Atomic orbital electron populations 1.22126 0.98161 1.00004 1.00719 1.18216 0.91304 0.91113 0.81871 0.96265 1.21496 1.31469 1.12846 0.91015 0.92655 1.25570 0.95193 0.95714 1.01382 1.69986 1.36933 1.23603 1.24311 0.85596 0.78210 0.78555 0.79768 1.19847 1.20708 1.20260 1.55365 1.80148 1.19018 1.30011 1.01187 0.73240 0.72732 0.72986 1.93514 1.51530 1.68194 1.84636 1.93521 1.81534 1.61031 1.59915 1.31901 1.17645 1.11487 1.18820 1.21817 1.01353 0.90087 0.88904 1.22933 0.92400 1.04286 0.98250 1.23952 0.99324 0.88601 0.89036 1.67607 1.29383 1.08365 1.14348 1.17138 0.89172 0.86774 0.92565 1.23300 0.86623 0.95503 1.05046 1.75946 1.26292 0.95098 1.16543 1.78811 0.93155 1.17578 1.13952 1.47821 1.08233 1.06438 1.42304 0.64229 1.74902 1.24901 0.91478 1.19118 0.94453 0.90908 0.94953 0.92528 0.74437 0.81067 0.78259 0.76522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.42 9.29 71.98 0.67 -6.75 16 2 C 0.28 13.96 2.77 44.25 0.12 14.08 16 3 H 0.02 1.02 7.81 -2.39 -0.02 1.01 16 4 C -0.53 -28.06 8.76 25.60 0.22 -27.83 16 5 H 0.06 2.94 7.81 -2.91 -0.02 2.91 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -49.86 11.32 21.45 0.24 -49.62 16 8 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 12 N -1.08 -47.59 4.33 -172.52 -0.75 -48.34 16 13 S 2.71 111.14 4.83 -56.49 -0.27 110.87 16 14 O -0.99 -43.03 16.37 -128.00 -2.09 -45.13 16 15 O -0.97 -41.52 15.07 -128.00 -1.93 -43.45 16 16 C -0.71 -25.85 5.72 22.57 0.13 -25.72 16 17 C 0.00 0.13 9.66 22.44 0.22 0.35 16 18 C -0.16 -3.22 10.11 22.40 0.23 -3.00 16 19 C 0.15 3.23 11.18 84.72 0.95 4.17 16 20 N -0.49 -15.29 10.29 -184.82 -1.90 -17.19 16 21 C 0.28 10.46 6.75 41.98 0.28 10.74 16 22 C 0.18 6.60 7.70 137.36 1.06 7.66 16 23 N -0.26 -10.17 5.61 -52.19 -0.29 -10.47 16 24 N -0.04 -1.26 13.47 37.02 0.50 -0.76 16 25 N -0.20 -4.81 7.90 37.02 0.29 -4.52 16 26 H 0.50 6.08 8.96 -347.53 -3.12 2.97 16 27 N -0.25 -7.84 12.39 -52.14 -0.65 -8.49 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 30 H 0.03 1.50 7.67 -2.39 -0.02 1.48 16 31 H 0.27 13.77 8.31 -92.70 -0.77 13.00 16 32 H 0.42 17.85 7.35 -96.74 -0.71 17.14 16 33 H 0.17 4.44 7.44 -2.91 -0.02 4.42 16 34 H 0.20 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.22 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -75.60 315.35 -3.14 -78.74 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -2.64 Total: 18.56 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 4.33 Total: -24.69 kcal Atomic # 7 Polarization: -136.84 SS G_CDS: -2.55 Total: -139.39 kcal Atomic # 8 Polarization: -84.55 SS G_CDS: -4.02 Total: -88.58 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 111.14 SS G_CDS: -0.27 Total: 110.87 kcal Total: -75.60 -3.14 -78.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.386 kcal (2) G-P(sol) polarization free energy of solvation -75.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds