Wall clock time and date at job start Fri Apr 10 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31752 * 119.70104 * 2 1 4 4 C 1.31884 * 121.85109 * 180.02562 * 3 2 1 5 5 C 1.38307 * 121.01940 * 0.27637 * 4 3 2 6 6 S 1.76194 * 120.35952 * 179.70383 * 5 4 3 7 7 O 1.42106 * 106.39793 * 203.53781 * 6 5 4 8 8 O 1.42096 * 106.40556 * 336.45909 * 6 5 4 9 9 N 1.65595 * 107.21740 * 90.00316 * 6 5 4 10 10 C 1.46501 * 120.00488 * 64.99450 * 9 6 5 11 11 C 1.50703 * 109.47017 * 164.99952 * 10 9 6 12 12 H 1.07993 * 120.00108 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99572 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99822 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99546 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47077 * 90.00190 * 15 13 11 17 17 H 1.48506 * 109.46846 * 209.99801 * 15 13 11 18 18 H 1.48497 * 109.47306 * 330.00184 * 15 13 11 19 19 C 1.38433 * 119.27596 * 359.45132 * 5 4 3 20 20 C 1.39256 * 119.69625 * 180.02562 * 2 1 3 21 21 C 1.48464 * 120.53794 * 359.95125 * 20 2 1 22 22 N 1.34052 * 126.66892 * 359.69636 * 21 20 2 23 23 N 1.28984 * 107.26765 * 179.83170 * 22 21 20 24 24 N 1.28733 * 108.94324 * 0.43015 * 23 22 21 25 25 H 0.97000 * 125.34159 * 179.75791 * 24 23 22 26 26 N 1.28878 * 109.31707 * 359.72623 * 24 23 22 27 27 H 1.09004 * 109.47045 * 90.00267 * 1 2 3 28 28 H 1.08999 * 109.46981 * 209.99935 * 1 2 3 29 29 H 1.08998 * 109.46660 * 330.00391 * 1 2 3 30 30 H 1.08002 * 119.48792 * 179.97438 * 4 3 2 31 31 H 0.97003 * 120.00141 * 245.00010 * 9 6 5 32 32 H 1.09000 * 109.47145 * 285.00336 * 10 9 6 33 33 H 1.08999 * 109.46489 * 45.00300 * 10 9 6 34 34 H 0.97001 * 119.99111 * 180.02562 * 14 13 11 35 35 H 1.07993 * 120.84031 * 180.26267 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1444 0.0000 4 6 3.4777 1.1939 -0.0005 5 6 4.2344 0.0362 -0.0068 6 16 5.9942 0.1226 -0.0152 7 8 6.4535 -1.1048 -0.5646 8 8 6.3311 1.3917 -0.5585 9 7 6.4915 0.1431 1.5642 10 6 6.2571 -1.0217 2.4212 11 6 7.1046 -0.9109 3.6624 12 1 7.7526 -0.0579 3.7994 13 6 7.0525 -1.8985 4.6232 14 7 6.2637 -2.9374 4.4561 15 14 8.1025 -1.7607 6.1620 16 1 7.3436 -1.0408 7.2162 17 1 8.4529 -3.1204 6.6455 18 1 9.3454 -1.0114 5.8477 19 6 3.5941 -1.1911 -0.0010 20 6 2.1969 -1.2097 -0.0005 21 6 1.4598 -2.4984 0.0000 22 7 0.1291 -2.6595 0.0066 23 7 -0.1030 -3.9283 0.0009 24 7 1.0195 -4.5585 0.0001 25 1 1.1215 -5.5231 -0.0004 26 7 1.9866 -3.7067 -0.0004 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 3.9737 2.1533 -0.0009 31 1 6.9381 0.9264 1.9220 32 1 5.2046 -1.0602 2.7021 33 1 6.5222 -1.9300 1.8802 34 1 6.2268 -3.6320 5.1322 35 1 4.1601 -2.1108 -0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592412363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:07 Heat of formation + Delta-G solvation = 62.023150 kcal Electronic energy + Delta-G solvation = -24803.528531 eV Core-core repulsion = 20965.943985 eV Total energy + Delta-G solvation = -3837.584546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.59464 -41.56870 -38.36405 -36.99180 -36.50809 -35.94674 -35.10133 -34.40906 -34.13545 -32.61508 -29.24211 -28.74883 -26.54733 -25.43319 -24.51839 -23.76065 -23.49958 -20.89810 -20.25079 -19.25342 -18.82385 -18.27814 -18.02593 -17.76823 -17.15043 -17.02785 -16.46430 -16.22952 -15.80596 -15.44356 -15.21329 -14.59662 -14.51003 -14.10295 -13.81540 -13.66961 -13.55868 -13.52632 -13.27167 -13.15933 -13.00329 -12.77134 -12.62731 -12.61445 -12.53332 -12.39021 -12.10296 -11.95218 -11.42458 -11.24238 -10.98030 -10.79545 -10.21816 -10.12448 -8.25575 -6.37134 -0.87094 -0.62655 -0.41557 0.05436 1.02789 1.29842 1.45251 1.46102 1.56938 2.00790 2.28881 2.39275 2.42672 2.70125 2.89646 3.06945 3.10346 3.25484 3.40570 3.59775 3.87042 4.03160 4.17999 4.32002 4.46688 4.56893 4.58217 4.75598 4.90649 5.02581 5.24808 5.29310 5.42477 5.52668 5.73583 5.96219 6.30880 6.47043 6.77186 6.99359 7.32666 8.85274 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.004609 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.053784 B = 6073.732716 C = 7581.810332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.220 3.780 3 N -0.499 5.499 4 C 0.224 3.776 5 C -0.743 4.743 6 S 2.719 3.281 7 O -0.986 6.986 8 O -0.972 6.972 9 N -1.098 6.098 10 C 0.258 3.742 11 C -0.548 4.548 12 H 0.077 0.923 13 C 0.009 3.991 14 N -0.925 5.925 15 Si 0.971 3.029 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.262 1.262 19 C 0.061 3.939 20 C -0.105 4.105 21 C 0.213 3.787 22 N -0.272 5.272 23 N -0.046 5.046 24 N -0.195 5.195 25 H 0.496 0.504 26 N -0.298 5.298 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.203 0.797 31 H 0.422 0.578 32 H 0.009 0.991 33 H 0.015 0.985 34 H 0.267 0.733 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.960 1.163 -8.466 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 N -0.209 5.209 4 C 0.065 3.935 5 C -0.832 4.832 6 S 2.807 3.193 7 O -0.976 6.976 8 O -0.962 6.962 9 N -0.861 5.861 10 C 0.133 3.867 11 C -0.587 4.587 12 H 0.095 0.905 13 C -0.191 4.191 14 N -0.564 5.564 15 Si 0.795 3.205 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.186 1.186 19 C 0.032 3.968 20 C -0.111 4.111 21 C -0.067 4.067 22 N -0.144 5.144 23 N -0.041 5.041 24 N -0.046 5.046 25 H 0.355 0.645 26 N -0.150 5.150 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.220 0.780 31 H 0.258 0.742 32 H 0.027 0.973 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.640 1.205 -9.198 15.679 hybrid contribution 1.086 -1.257 1.276 2.094 sum -11.554 -0.052 -7.923 14.010 Atomic orbital electron populations 1.21365 0.84854 1.06077 1.05472 1.22267 0.99239 0.86107 0.84277 1.67920 1.09482 1.27818 1.15676 1.23166 0.89398 0.97816 0.83162 1.31900 1.29032 1.00393 1.21842 1.00995 0.73195 0.72680 0.72431 1.93541 1.79270 1.47277 1.77543 1.93536 1.83099 1.42145 1.77399 1.55256 1.73656 1.26722 1.30460 1.18689 0.95842 0.82490 0.89678 1.21630 1.25530 1.07844 1.03720 0.90458 1.25864 0.96792 0.94579 1.01852 1.70058 1.39276 1.10730 1.36381 0.85359 0.79070 0.77472 0.78591 1.19779 1.21010 1.18634 1.21438 0.93711 0.97761 0.83871 1.18157 0.92408 0.89577 1.10937 1.23136 0.88696 0.91843 1.03033 1.76038 1.12760 1.06664 1.18948 1.78831 1.11092 0.99895 1.14250 1.47751 0.99942 1.13257 1.43693 0.64483 1.75025 1.18731 0.99806 1.21469 0.87635 0.87364 0.88562 0.77992 0.74177 0.97323 0.96666 0.92386 0.82889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.37 71.24 0.67 -1.77 16 2 C 0.22 5.94 6.81 42.82 0.29 6.24 16 3 N -0.50 -13.92 10.26 -183.07 -1.88 -15.80 16 4 C 0.22 6.30 10.68 84.70 0.90 7.20 16 5 C -0.74 -23.72 5.96 22.33 0.13 -23.59 16 6 S 2.72 95.56 5.75 -56.49 -0.32 95.23 16 7 O -0.99 -41.03 16.83 -128.00 -2.15 -43.18 16 8 O -0.97 -33.78 17.30 -128.00 -2.21 -35.99 16 9 N -1.10 -42.08 5.99 -190.78 -1.14 -43.22 16 10 C 0.26 12.47 5.98 85.63 0.51 12.98 16 11 C -0.55 -28.48 9.27 25.60 0.24 -28.24 16 12 H 0.08 3.76 7.65 -2.91 -0.02 3.73 16 13 C 0.01 0.49 5.46 84.66 0.46 0.95 16 14 N -0.93 -52.18 13.29 21.45 0.28 -51.89 16 15 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 19 C 0.06 2.00 9.30 22.68 0.21 2.21 16 20 C -0.10 -3.13 5.89 -19.95 -0.12 -3.24 16 21 C 0.21 5.96 7.80 137.38 1.07 7.03 16 22 N -0.27 -6.72 9.11 -52.18 -0.48 -7.20 16 23 N -0.05 -0.98 13.47 37.02 0.50 -0.48 16 24 N -0.20 -3.58 7.90 37.02 0.29 -3.28 16 25 H 0.50 4.13 8.96 -347.53 -3.12 1.01 16 26 N -0.30 -7.85 12.16 -52.13 -0.63 -8.49 16 27 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.11 2.30 5.14 -2.39 -0.01 2.29 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.20 4.52 7.62 -2.91 -0.02 4.49 16 31 H 0.42 14.29 8.54 -96.74 -0.83 13.46 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.02 0.82 7.75 -2.39 -0.02 0.80 16 34 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.15 5.26 7.61 -2.91 -0.02 5.24 16 Total: -1.00 -70.55 325.45 -4.10 -74.64 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -2.75 Total: 16.47 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 4.37 Total: -20.24 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -3.05 Total: -130.36 kcal Atomic # 8 Polarization: -74.81 SS G_CDS: -4.37 Total: -79.18 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 95.56 SS G_CDS: -0.32 Total: 95.23 kcal Total: -70.55 -4.10 -74.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592412363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.668 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds