Wall clock time and date at job start Fri Apr 10 2020 18:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00267 * 2 1 4 4 H 1.48493 * 109.47456 * 240.00147 * 3 2 1 5 5 H 1.48502 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46710 * 120.00169 * 3 2 1 7 7 C 1.37881 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99976 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47459 * 179.97438 * 9 7 2 11 11 C 1.39458 * 120.00417 * 179.97438 * 10 9 7 12 12 C 1.38796 * 120.13341 * 0.02562 * 11 10 9 13 13 C 1.38123 * 120.03746 * 179.71571 * 12 11 10 14 14 C 1.38416 * 120.31797 * 0.25888 * 13 12 11 15 15 C 1.38018 * 120.27456 * 359.97394 * 14 13 12 16 16 S 1.76203 * 120.02109 * 180.02562 * 15 14 13 17 17 N 1.65596 * 107.21891 * 114.99995 * 16 15 14 18 18 O 1.42100 * 106.39961 * 228.54251 * 16 15 14 19 19 O 1.42104 * 106.40183 * 1.45913 * 16 15 14 20 20 C 1.39242 * 119.95769 * 0.02562 * 15 14 13 21 21 C 1.48368 * 120.16176 * 180.02562 * 20 15 14 22 22 N 1.34074 * 126.67490 * 0.02562 * 21 20 15 23 23 N 1.28982 * 107.26367 * 179.97438 * 22 21 20 24 24 N 1.28721 * 108.95684 * 359.97438 * 23 22 21 25 25 H 0.97005 * 125.34127 * 180.02562 * 24 23 22 26 26 N 1.28875 * 109.32669 * 359.75513 * 24 23 22 27 27 H 0.96997 * 119.99576 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47018 * 60.00270 * 9 7 2 29 29 H 1.08995 * 109.47527 * 300.00226 * 9 7 2 30 30 H 0.97000 * 119.99284 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.98527 * 359.97438 * 12 11 10 32 32 H 1.07993 * 119.84256 * 180.27496 * 13 12 11 33 33 H 1.07996 * 119.86065 * 179.97438 * 14 13 12 34 34 H 0.96998 * 120.00046 * 150.00351 * 17 16 15 35 35 H 0.96997 * 119.99799 * 329.99595 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0018 11 6 1.7381 -4.9276 -0.0015 12 6 0.3741 -5.1844 -0.0005 13 6 -0.0841 -6.4874 -0.0061 14 6 0.8113 -7.5429 -0.0073 15 6 2.1704 -7.3025 -0.0035 16 16 3.3042 -8.6513 -0.0057 17 7 4.1346 -8.5913 -1.4372 18 8 4.2510 -8.3812 1.0190 19 8 2.5194 -9.8352 -0.0463 20 6 2.6449 -5.9935 0.0022 21 6 4.1050 -5.7298 0.0058 22 7 5.0841 -6.6457 0.0037 23 7 6.2051 -6.0077 0.0078 24 7 5.9663 -4.7428 0.0117 25 1 6.6397 -4.0447 0.0148 26 7 4.6922 -4.5493 0.0050 27 1 -0.4849 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5572 0.8896 30 1 3.1566 -3.4355 -0.0021 31 1 -0.3294 -4.3650 0.0004 32 1 -1.1460 -6.6836 -0.0099 33 1 0.4449 -8.5588 -0.0113 34 1 5.0458 -8.9206 -1.4835 35 1 3.7097 -8.2269 -2.2294 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606349274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:33 Heat of formation + Delta-G solvation = 105.042166 kcal Electronic energy + Delta-G solvation = -25466.702670 eV Core-core repulsion = 21630.983569 eV Total energy + Delta-G solvation = -3835.719101 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.28929 -39.32382 -36.86833 -35.51394 -35.34902 -34.25660 -33.49215 -32.86560 -32.69105 -30.61662 -29.51674 -26.66662 -24.68886 -24.40740 -23.20839 -21.66874 -21.29590 -19.18447 -19.06846 -18.02324 -17.18734 -17.04389 -16.97572 -16.35377 -15.89023 -15.51475 -15.15338 -14.76878 -14.41235 -14.03937 -13.85857 -13.72646 -13.14532 -12.52854 -12.42736 -12.20389 -11.88075 -11.83379 -11.76993 -11.60957 -11.58109 -11.20743 -11.06308 -11.05783 -10.82912 -10.58305 -10.50711 -10.24486 -10.07262 -9.87859 -9.56145 -8.89017 -8.68016 -6.88051 -6.33554 -4.39094 0.55955 0.82216 1.30913 1.64159 2.35639 2.52793 3.15000 3.20526 3.21522 3.39812 3.77779 3.83275 4.04322 4.08050 4.24360 4.38125 4.88373 5.04141 5.24987 5.35951 5.43450 5.58276 5.62324 5.79702 5.95804 6.16978 6.23576 6.42002 6.52683 6.60030 6.81493 7.01227 7.20500 7.26028 7.47220 7.78269 8.02123 8.26400 8.51464 8.75925 9.27431 10.77010 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.004200 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.648261 B = 6664.980059 C = 8013.906307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.242 3.758 10 N -0.705 5.705 11 C 0.252 3.748 12 C -0.147 4.147 13 C -0.071 4.071 14 C -0.101 4.101 15 C -0.593 4.593 16 S 2.710 3.290 17 N -1.236 6.236 18 O -0.938 6.938 19 O -0.978 6.978 20 C -0.043 4.043 21 C 0.210 3.790 22 N -0.244 5.244 23 N -0.046 5.046 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.298 5.298 27 H 0.268 0.732 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.408 0.592 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.419 0.581 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 -12.538 -3.406 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.121 3.879 10 N -0.331 5.331 11 C 0.134 3.866 12 C -0.171 4.171 13 C -0.092 4.092 14 C -0.124 4.124 15 C -0.682 4.682 16 S 2.797 3.203 17 N -0.909 5.909 18 O -0.926 6.926 19 O -0.968 6.968 20 C -0.054 4.054 21 C -0.069 4.069 22 N -0.119 5.119 23 N -0.042 5.042 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.150 5.150 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.251 0.749 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.249 0.751 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.984 -12.942 -2.541 14.924 hybrid contribution 0.509 2.530 -0.517 2.632 sum 7.493 -10.411 -3.058 13.187 Atomic orbital electron populations 1.69915 1.06061 1.27657 1.48900 1.24908 0.94953 0.99436 0.94477 0.86453 0.79481 0.82138 0.78761 1.20045 1.20930 1.20038 1.21086 0.93377 0.90123 1.53267 0.91945 1.19302 0.88785 0.82764 0.97044 1.46280 1.11898 1.01864 1.73021 1.18019 0.92395 0.85516 0.90655 1.21102 0.93551 0.98031 1.04378 1.21159 0.99830 0.91852 0.96315 1.20559 0.90400 1.00139 1.01269 1.30323 1.10840 1.12363 1.14646 1.01330 0.72902 0.72970 0.73143 1.52894 1.28363 1.81477 1.28133 1.93632 1.59746 1.84175 1.55086 1.93569 1.71729 1.44991 1.86485 1.15917 0.83885 0.91872 1.13747 1.23726 0.96035 0.85104 1.02013 1.76319 0.93910 1.24719 1.16912 1.78802 1.20837 0.89876 1.14716 1.47654 1.05260 1.07952 1.46754 0.67245 1.74431 0.92158 1.25367 1.23052 0.92260 0.95572 0.95591 0.74902 0.84055 0.84981 0.84051 0.75095 0.76351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 13.29 55.43 0.74 -23.55 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.99 9.28 -34.44 -0.32 -14.31 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.24 5.77 4.66 -5.19 -0.02 5.74 16 10 N -0.71 -14.54 5.65 -59.62 -0.34 -14.88 16 11 C 0.25 4.64 6.66 -83.55 -0.56 4.09 16 12 C -0.15 -2.43 9.30 -39.42 -0.37 -2.79 16 13 C -0.07 -0.96 10.03 -39.56 -0.40 -1.36 16 14 C -0.10 -1.39 9.54 -39.60 -0.38 -1.77 16 15 C -0.59 -8.91 5.93 -39.29 -0.23 -9.15 16 16 S 2.71 37.77 5.47 -107.50 -0.59 37.18 16 17 N -1.24 -12.63 7.97 60.35 0.48 -12.15 16 18 O -0.94 -15.94 14.59 -57.17 -0.83 -16.77 16 19 O -0.98 -15.28 16.96 -57.17 -0.97 -16.25 16 20 C -0.04 -0.73 5.89 -104.72 -0.62 -1.35 16 21 C 0.21 3.52 7.63 -156.29 -1.19 2.33 16 22 N -0.24 -3.80 6.39 32.14 0.21 -3.60 16 23 N -0.05 -0.64 13.47 60.35 0.81 0.18 16 24 N -0.23 -2.81 7.90 60.35 0.48 -2.33 16 25 H 0.47 3.47 8.96 -340.36 -3.05 0.42 16 26 N -0.30 -4.73 9.33 32.16 0.30 -4.43 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.03 0.66 7.95 -51.93 -0.41 0.24 16 29 H 0.03 0.66 7.95 -51.93 -0.41 0.25 16 30 H 0.41 8.22 4.91 -40.82 -0.20 8.02 16 31 H 0.14 2.36 6.73 -52.49 -0.35 2.01 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.14 1.66 7.32 -52.49 -0.38 1.28 16 34 H 0.42 3.65 8.96 -34.47 -0.31 3.34 16 35 H 0.41 3.37 8.96 -34.46 -0.31 3.06 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -33.93 311.96 -9.60 -43.54 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.39 Total: 10.26 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -4.18 Total: -16.92 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 2.68 Total: -60.76 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.80 Total: -33.02 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 37.77 SS G_CDS: -0.59 Total: 37.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.93 -9.60 -43.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.579 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds