Wall clock time and date at job start Fri Apr 10 2020 18:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47133 * 2 1 4 4 C 1.36930 * 119.99794 * 278.06744 * 3 2 1 5 5 H 1.08001 * 120.00013 * 141.52808 * 4 3 2 6 6 C 1.38815 * 120.00248 * 321.52610 * 4 3 2 7 7 N 1.31625 * 120.00075 * 159.43781 * 6 4 3 8 8 Si 1.86799 * 119.99726 * 339.43480 * 6 4 3 9 9 H 1.48501 * 109.47024 * 95.30946 * 8 6 4 10 10 H 1.48512 * 109.46807 * 215.30269 * 8 6 4 11 11 H 1.48498 * 109.47440 * 335.30091 * 8 6 4 12 12 S 1.65596 * 119.99911 * 98.07346 * 3 2 1 13 13 O 1.42100 * 106.40611 * 336.45441 * 12 3 2 14 14 O 1.42104 * 106.40146 * 203.53895 * 12 3 2 15 15 C 1.76202 * 107.22241 * 90.00047 * 12 3 2 16 16 C 1.38798 * 120.17825 * 89.99411 * 15 12 3 17 17 N 1.31506 * 121.58605 * 180.25632 * 16 15 12 18 18 C 1.32756 * 121.47347 * 359.43832 * 17 16 15 19 19 C 1.40911 * 119.85753 * 0.55476 * 18 17 16 20 20 C 1.37014 * 120.17265 * 269.97484 * 15 12 3 21 21 C 1.45848 * 106.46128 * 179.71206 * 19 18 17 22 22 C 1.50708 * 126.17306 * 179.97438 * 21 19 18 23 23 N 1.30240 * 107.66218 * 359.97438 * 21 19 18 24 24 N 1.36831 * 133.57551 * 180.17188 * 18 17 16 25 25 C 1.46492 * 125.39160 * 0.34478 * 24 18 17 26 26 H 1.08992 * 109.47230 * 185.01222 * 1 2 3 27 27 H 1.08999 * 109.47735 * 305.01955 * 1 2 3 28 28 H 1.08998 * 109.46963 * 65.01567 * 1 2 3 29 29 H 1.08992 * 109.47302 * 239.99594 * 2 1 3 30 30 H 1.09003 * 109.46992 * 119.99512 * 2 1 3 31 31 H 0.97000 * 119.99558 * 180.02562 * 7 6 4 32 32 H 1.08006 * 119.20611 * 359.97438 * 16 15 12 33 33 H 1.08000 * 120.92408 * 0.02562 * 20 15 12 34 34 H 1.08997 * 109.47128 * 89.99522 * 22 21 19 35 35 H 1.09001 * 109.47065 * 209.99951 * 22 21 19 36 36 H 1.09003 * 109.46678 * 329.99871 * 22 21 19 37 37 H 1.09004 * 109.47230 * 89.99578 * 25 24 18 38 38 H 1.09003 * 109.47535 * 210.00324 * 25 24 18 39 39 H 1.09003 * 109.47081 * 330.00254 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0896 2.0821 -1.1741 5 1 1.8344 3.1314 -1.1930 6 6 2.4900 1.4442 -2.3402 7 7 2.1853 1.9617 -3.5114 8 14 3.4613 -0.1487 -2.2470 9 1 2.5330 -1.3020 -2.3629 10 1 4.4468 -0.1931 -3.3570 11 1 4.1762 -0.2173 -0.9473 12 16 2.4842 2.0947 1.4199 13 8 1.8108 1.3977 2.4591 14 8 2.3669 3.4969 1.2217 15 6 4.2020 1.7640 1.6309 16 6 5.1492 2.6408 1.1203 17 7 6.4381 2.4187 1.2574 18 6 6.8927 1.3501 1.9007 19 6 5.9848 0.4191 2.4436 20 6 4.6099 0.6402 2.3001 21 6 6.7882 -0.6252 3.0689 22 6 6.2628 -1.8426 3.7854 23 7 8.0416 -0.3161 2.8965 24 7 8.1470 0.8845 2.1874 25 6 9.4018 1.5399 1.8106 26 1 -0.3633 -1.0237 0.0898 27 1 -0.3634 0.5897 0.8416 28 1 -0.3633 0.4341 -0.9315 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.4647 1.5156 -4.3262 32 1 4.8197 3.5245 0.5939 33 1 3.8906 -0.0560 2.7057 34 1 6.1436 -2.6597 3.0739 35 1 6.9666 -2.1381 4.5635 36 1 5.2983 -1.6103 4.2369 37 1 9.7052 2.2259 2.6015 38 1 10.1762 0.7864 1.6663 39 1 9.2578 2.0950 0.8837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263676235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:14 Heat of formation + Delta-G solvation = 40.915930 kcal Electronic energy + Delta-G solvation = -26163.734431 eV Core-core repulsion = 22428.774951 eV Total energy + Delta-G solvation = -3734.959480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47043 -37.96479 -36.44166 -36.03488 -34.61966 -34.38946 -32.46119 -31.73091 -30.12019 -29.63241 -29.57653 -25.72931 -24.66970 -23.78109 -22.68107 -22.48268 -19.89120 -18.67236 -17.77676 -17.26504 -16.93379 -16.47452 -16.33219 -15.90305 -15.70411 -15.08105 -14.14072 -13.72386 -13.66458 -13.47458 -13.46644 -13.32351 -13.20675 -12.91233 -12.87195 -12.81440 -12.55881 -12.38135 -11.82056 -11.63437 -11.19716 -11.18826 -11.11070 -10.92075 -10.90833 -10.68910 -10.42039 -10.36685 -10.28429 -10.02920 -9.24950 -9.14975 -8.88087 -8.37183 -8.21923 -6.81195 -4.26907 0.89753 1.13038 1.53542 2.13601 2.39599 2.90020 3.07368 3.09598 3.73928 3.87513 4.08107 4.15980 4.32939 4.48702 4.60486 4.82089 4.98847 5.05404 5.13271 5.21133 5.25403 5.37821 5.40647 5.52640 5.56996 5.59312 5.74265 5.85804 5.89221 5.98118 6.14259 6.27167 6.30842 6.53743 6.62359 6.81448 6.84049 7.00096 7.28629 7.45409 8.00358 8.11334 8.71943 8.80445 10.24438 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.005447 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.354113 B = 5139.569125 C = 5485.658734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.117 3.883 3 N -0.825 5.825 4 C -0.248 4.248 5 H 0.127 0.873 6 C 0.069 3.931 7 N -0.819 5.819 8 Si 0.878 3.122 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.259 1.259 12 S 2.546 3.454 13 O -0.998 6.998 14 O -0.969 6.969 15 C -0.749 4.749 16 C 0.258 3.742 17 N -0.518 5.518 18 C 0.337 3.663 19 C -0.250 4.250 20 C 0.096 3.904 21 C 0.117 3.883 22 C -0.076 4.076 23 N -0.251 5.251 24 N -0.400 5.400 25 C 0.115 3.885 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.283 0.717 32 H 0.182 0.818 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 -6.987 7.296 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.009 4.009 3 N -0.649 5.649 4 C -0.397 4.397 5 H 0.144 0.856 6 C -0.148 4.148 7 N -0.455 5.455 8 Si 0.705 3.295 9 H -0.192 1.192 10 H -0.212 1.212 11 H -0.184 1.184 12 S 2.645 3.355 13 O -0.987 6.987 14 O -0.959 6.959 15 C -0.830 4.830 16 C 0.089 3.911 17 N -0.234 5.234 18 C 0.098 3.902 19 C -0.260 4.260 20 C 0.067 3.933 21 C -0.062 4.062 22 C -0.135 4.135 23 N -0.065 5.065 24 N -0.190 5.190 25 C -0.027 4.027 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.198 0.802 33 H 0.165 0.835 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.799 -6.238 7.866 13.350 hybrid contribution 0.291 -1.257 -0.215 1.308 sum 9.090 -7.495 7.651 14.048 Atomic orbital electron populations 1.22020 0.95310 1.00902 1.03267 1.21316 0.95474 0.83354 1.00765 1.53989 1.65658 1.21903 1.23387 1.19411 1.39657 0.98337 0.82304 0.85588 1.25817 0.95006 0.98721 0.95210 1.69810 1.38386 1.39258 0.98011 0.86884 0.80489 0.82944 0.79134 1.19229 1.21248 1.18353 1.10953 0.73831 0.75445 0.75242 1.93350 1.72844 1.74469 1.58081 1.93388 1.85741 1.31018 1.85757 1.32858 1.32542 1.04714 1.12857 1.22542 0.85083 0.95623 0.87901 1.66886 1.17811 1.19242 1.19439 1.19166 0.86283 0.91582 0.93180 1.20451 0.95406 0.99460 1.10668 1.20461 0.92934 0.92894 0.87033 1.23512 0.89363 0.96270 0.97064 1.20312 1.01719 0.91880 0.99592 1.76609 1.19365 0.97764 1.12794 1.48030 1.03795 1.18440 1.48720 1.21771 0.82310 0.97153 1.01422 0.92746 0.92129 0.91329 0.92693 0.91307 0.90636 0.80163 0.83506 0.89596 0.90083 0.89559 0.91304 0.89629 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.17 37.16 0.38 -2.30 16 2 C 0.12 2.23 5.13 -4.04 -0.02 2.21 16 3 N -0.82 -17.93 2.47 -59.91 -0.15 -18.08 16 4 C -0.25 -5.95 9.49 -15.06 -0.14 -6.09 16 5 H 0.13 3.27 7.64 -52.49 -0.40 2.87 16 6 C 0.07 1.65 5.35 -17.43 -0.09 1.56 16 7 N -0.82 -20.43 13.97 55.49 0.78 -19.65 16 8 Si 0.88 18.72 24.95 -169.99 -4.24 14.48 16 9 H -0.27 -5.30 6.72 56.52 0.38 -4.92 16 10 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 12 S 2.55 55.05 5.61 -107.50 -0.60 54.44 16 13 O -1.00 -21.95 16.23 -57.17 -0.93 -22.88 16 14 O -0.97 -23.31 16.23 -57.17 -0.93 -24.24 16 15 C -0.75 -15.00 5.95 -39.82 -0.24 -15.24 16 16 C 0.26 5.14 10.65 -17.48 -0.19 4.95 16 17 N -0.52 -10.14 10.40 -12.34 -0.13 -10.27 16 18 C 0.34 6.32 7.97 -156.11 -1.24 5.08 16 19 C -0.25 -4.47 6.35 -105.18 -0.67 -5.13 16 20 C 0.10 1.74 9.64 -39.37 -0.38 1.36 16 21 C 0.12 1.75 7.44 -80.22 -0.60 1.15 16 22 C -0.08 -0.77 10.48 36.01 0.38 -0.39 16 23 N -0.25 -3.97 12.40 34.82 0.43 -3.53 16 24 N -0.40 -6.50 4.04 -67.21 -0.27 -6.77 16 25 C 0.11 1.33 11.44 59.84 0.68 2.01 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.07 2.93 -51.93 -0.15 0.91 16 30 H 0.07 1.16 7.50 -51.93 -0.39 0.77 16 31 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.18 3.38 7.60 -52.48 -0.40 2.98 16 33 H 0.15 2.28 7.67 -52.49 -0.40 1.88 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -30.76 342.20 -7.72 -38.48 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.70 Total: 3.69 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.13 Total: -10.83 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.66 Total: -58.30 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.86 Total: -47.12 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.24 Total: 14.48 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.60 Total: 54.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.76 -7.72 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263676235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.395 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds