Wall clock time and date at job start Fri Apr 10 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47122 * 2 1 4 4 C 1.36939 * 120.00198 * 73.12443 * 3 2 1 5 5 H 1.08000 * 120.00199 * 207.83931 * 4 3 2 6 6 C 1.38807 * 119.99455 * 27.56050 * 4 3 2 7 7 N 1.31619 * 120.00553 * 27.75816 * 6 4 3 8 8 Si 1.86806 * 119.99590 * 207.76193 * 6 4 3 9 9 H 1.48502 * 109.46923 * 90.00270 * 8 6 4 10 10 H 1.48504 * 109.47052 * 209.99882 * 8 6 4 11 11 H 1.48500 * 109.47123 * 329.99998 * 8 6 4 12 12 S 1.65607 * 120.00081 * 253.12676 * 3 2 1 13 13 O 1.42097 * 106.39963 * 23.53487 * 12 3 2 14 14 O 1.42095 * 106.39972 * 156.45976 * 12 3 2 15 15 C 1.76203 * 107.21540 * 269.99921 * 12 3 2 16 16 C 1.38385 * 119.90667 * 269.72127 * 15 12 3 17 17 C 1.38438 * 120.43882 * 179.78751 * 16 15 12 18 18 C 1.37772 * 119.93473 * 0.50090 * 17 16 15 19 19 C 1.39705 * 119.83777 * 359.74510 * 18 17 16 20 20 C 1.38088 * 119.90832 * 89.99886 * 15 12 3 21 21 C 1.47879 * 118.78702 * 180.02562 * 19 18 17 22 22 O 1.21552 * 120.45194 * 197.66037 * 21 19 18 23 23 N 1.34820 * 119.09537 * 17.64244 * 21 19 18 24 24 C 1.46035 * 121.17536 * 2.78091 * 23 21 19 25 25 C 1.50549 * 120.94875 * 179.69860 * 18 17 16 26 26 H 1.09002 * 109.47116 * 299.99916 * 1 2 3 27 27 H 1.08998 * 109.48013 * 59.99568 * 1 2 3 28 28 H 1.09008 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47116 * 240.00084 * 2 1 3 30 30 H 1.08994 * 109.47968 * 119.99952 * 2 1 3 31 31 H 0.96996 * 120.00284 * 179.97438 * 7 6 4 32 32 H 1.07998 * 119.77660 * 0.02562 * 16 15 12 33 33 H 1.08001 * 120.03028 * 180.26630 * 17 16 15 34 34 H 1.07994 * 120.21604 * 359.94123 * 20 15 12 35 35 H 0.96999 * 119.41187 * 182.80386 * 23 21 19 36 36 H 1.09001 * 109.16206 * 82.65270 * 24 23 21 37 37 H 1.09001 * 109.16654 * 201.90285 * 24 23 21 38 38 H 1.08993 * 109.39854 * 25.94338 * 25 18 17 39 39 H 1.08996 * 109.31717 * 266.17448 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9219 2.1416 1.1348 5 1 1.8418 3.2160 1.0598 6 6 1.9214 1.5308 2.3813 7 7 2.5320 0.3770 2.5492 8 14 1.0540 2.3466 3.8207 9 1 -0.3578 1.8890 3.8716 10 1 1.7397 1.9779 5.0853 11 1 1.0906 3.8212 3.6494 12 16 2.6867 2.0232 -1.3724 13 8 2.1678 1.2714 -2.4609 14 8 2.5472 3.4332 -1.2650 15 6 4.4158 1.6885 -1.3161 16 6 5.2756 2.5976 -0.7252 17 6 6.6355 2.3437 -0.6709 18 6 7.1407 1.1841 -1.2169 19 6 6.2773 0.2656 -1.8191 20 6 4.9097 0.5224 -1.8668 21 6 6.8444 -0.9717 -2.3973 22 8 6.2037 -1.6295 -3.1937 23 7 8.0820 -1.3599 -2.0293 24 6 8.8419 -0.6148 -1.0293 25 6 8.6163 0.8882 -1.1767 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.5320 -0.0496 3.4203 32 1 4.8827 3.5094 -0.3001 33 1 7.3000 3.0558 -0.2043 34 1 4.2395 -0.1857 -2.3312 35 1 8.4747 -2.1480 -2.4362 36 1 8.5267 -0.9279 -0.0340 37 1 9.9033 -0.8302 -1.1528 38 1 9.0665 1.4065 -0.3301 39 1 9.0788 1.2347 -2.1008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265400427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:29 Heat of formation + Delta-G solvation = -80.725543 kcal Electronic energy + Delta-G solvation = -26046.609863 eV Core-core repulsion = 22274.082861 eV Total energy + Delta-G solvation = -3772.527001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.44801 -37.90454 -36.17233 -36.06361 -35.82717 -34.40961 -32.04013 -31.95083 -30.79284 -29.31686 -29.00808 -24.94494 -24.15851 -23.80102 -21.69031 -21.49326 -19.70004 -18.41402 -17.73540 -17.25870 -16.74425 -16.35887 -15.93314 -15.53702 -15.09999 -14.85885 -14.58260 -14.08863 -14.05565 -13.54700 -13.40596 -13.28789 -13.05613 -12.86458 -12.43624 -12.32935 -12.08778 -11.76251 -11.41654 -11.37033 -11.17203 -11.02634 -11.00313 -10.72517 -10.66701 -10.51511 -10.25053 -10.03037 -9.85253 -9.65091 -9.41907 -9.21852 -8.70232 -8.64610 -7.97685 -6.64702 -4.13808 1.01458 1.46402 1.78499 2.92919 3.05368 3.12585 3.17341 3.20994 3.87859 3.98420 4.41963 4.50212 4.59167 4.63652 4.66403 4.98893 5.06862 5.09717 5.21126 5.40614 5.60804 5.65753 5.69357 5.86821 6.00660 6.07208 6.22835 6.32427 6.37942 6.42897 6.54198 6.66399 6.69541 6.79498 6.90665 7.12131 7.13086 7.20362 7.26220 7.51217 8.20848 8.24845 8.60496 9.07170 10.25655 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.004814 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.565620 B = 5814.817361 C = 6221.720986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.107 3.893 3 N -0.795 5.795 4 C -0.239 4.239 5 H 0.116 0.884 6 C 0.037 3.963 7 N -0.816 5.816 8 Si 0.923 3.077 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.262 1.262 12 S 2.521 3.479 13 O -0.999 6.999 14 O -0.985 6.985 15 C -0.660 4.660 16 C 0.008 3.992 17 C -0.150 4.150 18 C -0.029 4.029 19 C -0.169 4.169 20 C 0.033 3.967 21 C 0.570 3.430 22 O -0.535 6.535 23 N -0.731 5.731 24 C 0.116 3.884 25 C -0.102 4.102 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.276 0.724 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.402 0.598 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.962 -1.196 0.755 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 N -0.618 5.618 4 C -0.388 4.388 5 H 0.133 0.867 6 C -0.177 4.177 7 N -0.454 5.454 8 Si 0.748 3.252 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.186 1.186 12 S 2.621 3.379 13 O -0.989 6.989 14 O -0.975 6.975 15 C -0.737 4.737 16 C -0.011 4.011 17 C -0.168 4.168 18 C -0.030 4.030 19 C -0.173 4.173 20 C 0.013 3.987 21 C 0.359 3.641 22 O -0.412 6.412 23 N -0.384 5.384 24 C -0.009 4.009 25 C -0.140 4.140 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.238 0.762 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.337 -1.089 -0.436 10.403 hybrid contribution 0.834 -0.272 0.878 1.241 sum 11.170 -1.361 0.443 11.262 Atomic orbital electron populations 1.21948 0.96997 1.00112 1.01816 1.21505 0.93714 0.83107 1.03605 1.54180 1.57928 1.21482 1.28225 1.19945 1.42312 0.93392 0.83191 0.86690 1.25740 0.96174 0.96640 0.99186 1.69977 1.33899 1.16550 1.24939 0.85959 0.79692 0.80323 0.79216 1.19663 1.20684 1.18556 1.11897 0.73859 0.75044 0.77113 1.93356 1.78288 1.72055 1.55188 1.93337 1.85744 1.31204 1.87239 1.32582 1.31602 1.01554 1.07968 1.21107 0.92481 0.97028 0.90488 1.20981 0.95963 0.97282 1.02623 1.19990 0.94593 0.94028 0.94348 1.19691 0.94992 0.96145 1.06461 1.20839 0.93610 0.94187 0.90017 1.18330 0.80698 0.84620 0.80485 1.90805 1.59723 1.56021 1.34689 1.45678 1.16948 1.31592 1.44227 1.21271 0.96172 0.91098 0.92343 1.20860 0.92865 0.96149 1.04099 0.92219 0.93490 0.93285 0.92419 0.87500 0.91321 0.84305 0.85340 0.84130 0.76209 0.91353 0.89481 0.88482 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 10.05 37.15 0.37 -2.58 16 2 C 0.11 2.36 5.78 -4.04 -0.02 2.34 16 3 N -0.80 -18.76 2.94 -59.91 -0.18 -18.94 16 4 C -0.24 -5.68 8.89 -15.06 -0.13 -5.81 16 5 H 0.12 2.74 7.34 -52.49 -0.39 2.36 16 6 C 0.04 0.84 4.98 -17.43 -0.09 0.76 16 7 N -0.82 -18.94 11.14 55.49 0.62 -18.32 16 8 Si 0.92 17.72 29.63 -169.99 -5.04 12.68 16 9 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 10 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 11 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 12 S 2.52 60.16 5.61 -107.50 -0.60 59.56 16 13 O -1.00 -25.52 16.02 -57.17 -0.92 -26.43 16 14 O -0.99 -25.10 16.09 -57.17 -0.92 -26.02 16 15 C -0.66 -14.29 5.97 -39.58 -0.24 -14.52 16 16 C 0.01 0.16 9.51 -39.45 -0.38 -0.22 16 17 C -0.15 -2.35 9.73 -39.68 -0.39 -2.74 16 18 C -0.03 -0.44 5.68 -104.32 -0.59 -1.03 16 19 C -0.17 -3.12 5.78 -105.03 -0.61 -3.73 16 20 C 0.03 0.71 9.11 -39.27 -0.36 0.35 16 21 C 0.57 9.91 7.79 -12.29 -0.10 9.82 16 22 O -0.54 -11.12 17.46 5.32 0.09 -11.03 16 23 N -0.73 -8.91 5.58 -61.70 -0.34 -9.25 16 24 C 0.12 1.04 7.03 -4.45 -0.03 1.01 16 25 C -0.10 -1.02 6.04 -28.11 -0.17 -1.19 16 26 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.06 1.24 7.22 -51.93 -0.37 0.87 16 30 H 0.11 2.45 5.36 -51.93 -0.28 2.17 16 31 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 32 H 0.14 2.56 7.59 -52.49 -0.40 2.17 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.14 3.08 7.41 -52.49 -0.39 2.70 16 35 H 0.40 4.00 8.92 -40.82 -0.36 3.64 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -31.66 339.14 -9.59 -41.26 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.69 Total: 8.93 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -2.72 Total: -17.54 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.10 Total: -46.51 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -1.74 Total: -63.48 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.04 Total: 12.68 kcal Atomic # 16 Polarization: 60.16 SS G_CDS: -0.60 Total: 59.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.66 -9.59 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265400427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.470 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds