Wall clock time and date at job start Fri Apr 10 2020 18:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30243 * 126.17197 * 2 1 4 4 N 1.39838 * 110.09060 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.38319 * 180.02562 * 4 3 2 6 6 C 1.36830 * 109.22576 * 359.97438 * 4 3 2 7 7 N 1.32761 * 133.57876 * 180.02562 * 6 4 3 8 8 C 1.31509 * 121.47110 * 179.97438 * 7 6 4 9 9 C 1.38799 * 121.58944 * 0.02562 * 8 7 6 10 10 S 1.76206 * 120.17557 * 180.02562 * 9 8 7 11 11 O 1.42098 * 106.40369 * 336.45923 * 10 9 8 12 12 O 1.42101 * 106.40006 * 203.53879 * 10 9 8 13 13 N 1.65596 * 107.21689 * 89.99743 * 10 9 8 14 14 C 1.46505 * 119.99941 * 65.00216 * 13 10 9 15 15 C 1.52997 * 109.47212 * 164.99768 * 14 13 10 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.37018 * 119.64751 * 0.27059 * 9 8 7 25 25 C 1.40000 * 118.15321 * 359.47552 * 24 9 8 26 26 H 1.09004 * 109.46904 * 89.98176 * 1 2 3 27 27 H 1.09002 * 109.47417 * 209.97732 * 1 2 3 28 28 H 1.08991 * 109.47341 * 329.98356 * 1 2 3 29 29 H 1.09000 * 109.47448 * 269.95771 * 5 4 3 30 30 H 1.09005 * 109.47077 * 29.96485 * 5 4 3 31 31 H 1.09001 * 109.46977 * 149.95540 * 5 4 3 32 32 H 1.07993 * 119.20110 * 179.97438 * 8 7 6 33 33 H 0.96997 * 120.00145 * 244.99335 * 13 10 9 34 34 H 1.09002 * 109.47068 * 284.99828 * 14 13 10 35 35 H 1.09001 * 109.47372 * 44.99916 * 14 13 10 36 36 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 37 37 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 38 38 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.92579 * 179.70169 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2757 1.0514 0.0000 4 7 3.6193 0.6640 0.0006 5 6 4.7653 1.5767 0.0013 6 6 3.6944 -0.7022 0.0016 7 7 4.7049 -1.5633 0.0028 8 6 4.5000 -2.8623 0.0041 9 6 3.2188 -3.3963 0.0036 10 16 2.9873 -5.1431 0.0059 11 8 4.1740 -5.7059 -0.5365 12 8 1.6963 -5.3774 -0.5394 13 7 2.9214 -5.6266 1.5883 14 6 1.8194 -5.1815 2.4450 15 6 1.7780 -6.0406 3.7103 16 6 0.6449 -5.5824 4.5918 17 1 0.0168 -4.7608 4.2805 18 6 0.4094 -6.2126 5.7953 19 7 1.1740 -7.2134 6.1742 20 14 -0.9947 -5.6441 6.8884 21 1 -2.2287 -6.3927 6.5384 22 1 -0.6489 -5.8969 8.3102 23 1 -1.2230 -4.1909 6.6852 24 6 2.1351 -2.5579 -0.0039 25 6 2.3679 -1.1774 0.0005 26 1 -0.3633 0.0003 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5140 29 1 5.0505 1.8027 -1.0262 30 1 4.4945 2.4994 0.5146 31 1 5.6034 1.1071 0.5162 32 1 5.3491 -3.5296 0.0046 33 1 3.6123 -6.2046 1.9480 34 1 1.9714 -4.1376 2.7194 35 1 0.8771 -5.2822 1.9065 36 1 1.6261 -7.0845 3.4359 37 1 2.7203 -5.9400 4.2489 38 1 1.0081 -7.6570 7.0207 39 1 1.1292 -2.9511 -0.0092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273515942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:43 Heat of formation + Delta-G solvation = 19.024558 kcal Electronic energy + Delta-G solvation = -24839.888029 eV Core-core repulsion = 21103.979267 eV Total energy + Delta-G solvation = -3735.908761 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91523 -38.48974 -37.10217 -35.70488 -35.44675 -34.75542 -32.77986 -32.27474 -30.63483 -29.84175 -29.17890 -26.12468 -24.56010 -24.29443 -23.23669 -21.22004 -20.29850 -19.49603 -18.17475 -17.70036 -17.21844 -16.94088 -16.31345 -16.23423 -15.67876 -15.40497 -14.59997 -14.23849 -14.00725 -13.93455 -13.86543 -13.70164 -13.64936 -13.44035 -13.08237 -12.62977 -12.59454 -12.14883 -11.98517 -11.91258 -11.81742 -11.71790 -11.33765 -11.16096 -11.03017 -10.92340 -10.66860 -10.51312 -9.80938 -9.63341 -9.35910 -9.31218 -8.99171 -8.75397 -8.44281 -6.11221 -4.14858 0.41296 0.48489 0.69361 1.77251 2.04739 3.11050 3.26982 3.33543 3.35452 3.40147 3.74643 3.87840 3.90549 4.05000 4.37937 4.44641 4.62775 4.67321 4.83970 4.88718 5.05046 5.13199 5.17858 5.25826 5.26539 5.40669 5.46853 5.59302 5.70187 5.91635 6.12274 6.13948 6.38927 6.40504 6.66454 7.08708 7.34931 7.49626 7.52289 7.61191 7.86948 8.24162 8.90843 9.49989 11.00147 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.003846 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.892666 B = 7278.089177 C = 8673.532371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.128 3.872 3 N -0.246 5.246 4 N -0.393 5.393 5 C 0.111 3.889 6 C 0.349 3.651 7 N -0.511 5.511 8 C 0.261 3.739 9 C -0.771 4.771 10 S 2.704 3.296 11 O -0.966 6.966 12 O -0.957 6.957 13 N -1.109 6.109 14 C 0.117 3.883 15 C 0.018 3.982 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.121 3.879 25 C -0.247 4.247 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.183 0.817 33 H 0.418 0.582 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 14.228 -13.276 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 N -0.059 5.059 4 N -0.181 5.181 5 C -0.030 4.030 6 C 0.109 3.891 7 N -0.226 5.226 8 C 0.089 3.911 9 C -0.860 4.860 10 S 2.790 3.210 11 O -0.956 6.956 12 O -0.946 6.946 13 N -0.871 5.871 14 C -0.008 4.008 15 C -0.021 4.021 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.092 3.908 25 C -0.257 4.257 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.199 0.801 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.237 15.624 -13.942 21.585 hybrid contribution -0.903 -0.278 1.234 1.554 sum 4.334 15.346 -12.707 20.390 Atomic orbital electron populations 1.20401 0.84674 1.04847 1.04093 1.23633 0.97101 0.87981 0.96316 1.76758 0.86117 1.22643 1.20378 1.48210 1.04835 1.01541 1.63523 1.21868 0.84576 0.93167 1.03393 1.19223 0.90623 0.86361 0.92856 1.66885 1.32811 1.02845 1.20083 1.22466 0.94932 0.89653 0.84013 1.31659 1.00715 1.28986 1.24641 1.01645 0.73645 0.72753 0.72915 1.93563 1.48657 1.76211 1.77206 1.93581 1.40560 1.83597 1.76895 1.55497 1.37260 1.63648 1.30695 1.21676 0.86536 0.98761 0.93787 1.19283 0.97939 0.95229 0.89643 1.21068 1.14435 1.17368 1.03534 0.92283 1.24997 0.96495 0.94903 0.97847 1.69956 1.38541 1.22270 1.22275 0.86542 0.82352 0.79095 0.79702 1.20493 1.21209 1.19819 1.20605 0.99219 0.90100 0.80869 1.20415 0.93911 0.94956 1.16468 0.89272 0.89050 0.89672 0.90925 0.89185 0.88946 0.80052 0.74635 0.93123 0.91163 0.95440 0.95756 0.92797 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.48 36.00 0.38 -0.26 16 2 C 0.13 1.51 7.44 -80.22 -0.60 0.91 16 3 N -0.25 -3.11 12.40 34.82 0.43 -2.68 16 4 N -0.39 -4.93 4.04 -67.21 -0.27 -5.20 16 5 C 0.11 0.92 11.44 59.85 0.68 1.60 16 6 C 0.35 4.92 7.97 -156.11 -1.24 3.68 16 7 N -0.51 -7.12 10.40 -12.35 -0.13 -7.25 16 8 C 0.26 3.39 10.65 -17.48 -0.19 3.20 16 9 C -0.77 -10.26 5.93 -39.82 -0.24 -10.50 16 10 S 2.70 38.99 5.74 -107.50 -0.62 38.37 16 11 O -0.97 -15.12 17.28 -57.17 -0.99 -16.11 16 12 O -0.96 -16.06 16.78 -57.17 -0.96 -17.02 16 13 N -1.11 -17.01 6.00 -10.61 -0.06 -17.07 16 14 C 0.12 2.15 6.16 -4.04 -0.02 2.13 16 15 C 0.02 0.42 5.11 -27.89 -0.14 0.28 16 16 C -0.52 -13.84 9.11 -34.44 -0.31 -14.16 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 20 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.12 1.56 9.64 -39.36 -0.38 1.18 16 25 C -0.25 -3.31 6.35 -105.18 -0.67 -3.98 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.18 1.89 7.59 -52.49 -0.40 1.49 16 33 H 0.42 5.90 8.65 -34.47 -0.30 5.60 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.16 1.73 7.66 -52.49 -0.40 1.33 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -34.78 353.50 -9.23 -44.01 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.85 Total: 1.14 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.83 Total: -14.39 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.70 Total: -57.02 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.95 Total: -33.12 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 38.99 SS G_CDS: -0.62 Total: 38.37 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.78 -9.23 -44.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273515942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.036 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds