Wall clock time and date at job start Fri Apr 10 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30243 * 126.17197 * 2 1 4 4 N 1.39838 * 110.09060 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.38319 * 180.02562 * 4 3 2 6 6 C 1.36830 * 109.22576 * 359.97438 * 4 3 2 7 7 N 1.32761 * 133.57876 * 180.02562 * 6 4 3 8 8 C 1.31509 * 121.47110 * 179.97438 * 7 6 4 9 9 C 1.38799 * 121.58944 * 0.02562 * 8 7 6 10 10 S 1.76206 * 120.17557 * 180.02562 * 9 8 7 11 11 O 1.42098 * 106.40369 * 336.45923 * 10 9 8 12 12 O 1.42101 * 106.40006 * 203.53879 * 10 9 8 13 13 N 1.65596 * 107.21689 * 89.99743 * 10 9 8 14 14 C 1.46505 * 119.99941 * 65.00216 * 13 10 9 15 15 C 1.52997 * 109.47212 * 164.99768 * 14 13 10 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.37018 * 119.64751 * 0.27059 * 9 8 7 25 25 C 1.40000 * 118.15321 * 359.47552 * 24 9 8 26 26 H 1.09004 * 109.46904 * 89.98176 * 1 2 3 27 27 H 1.09002 * 109.47417 * 209.97732 * 1 2 3 28 28 H 1.08991 * 109.47341 * 329.98356 * 1 2 3 29 29 H 1.09000 * 109.47448 * 269.95771 * 5 4 3 30 30 H 1.09005 * 109.47077 * 29.96485 * 5 4 3 31 31 H 1.09001 * 109.46977 * 149.95540 * 5 4 3 32 32 H 1.07993 * 119.20110 * 179.97438 * 8 7 6 33 33 H 0.96997 * 120.00145 * 244.99335 * 13 10 9 34 34 H 1.09002 * 109.47068 * 284.99828 * 14 13 10 35 35 H 1.09001 * 109.47372 * 44.99916 * 14 13 10 36 36 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 37 37 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 38 38 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.92579 * 179.70169 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2757 1.0514 0.0000 4 7 3.6193 0.6640 0.0006 5 6 4.7653 1.5767 0.0013 6 6 3.6944 -0.7022 0.0016 7 7 4.7049 -1.5633 0.0028 8 6 4.5000 -2.8623 0.0041 9 6 3.2188 -3.3963 0.0036 10 16 2.9873 -5.1431 0.0059 11 8 4.1740 -5.7059 -0.5365 12 8 1.6963 -5.3774 -0.5394 13 7 2.9214 -5.6266 1.5883 14 6 1.8194 -5.1815 2.4450 15 6 1.7780 -6.0406 3.7103 16 6 0.6449 -5.5824 4.5918 17 1 0.0168 -4.7608 4.2805 18 6 0.4094 -6.2126 5.7953 19 7 1.1740 -7.2134 6.1742 20 14 -0.9947 -5.6441 6.8884 21 1 -2.2287 -6.3927 6.5384 22 1 -0.6489 -5.8969 8.3102 23 1 -1.2230 -4.1909 6.6852 24 6 2.1351 -2.5579 -0.0039 25 6 2.3679 -1.1774 0.0005 26 1 -0.3633 0.0003 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5140 29 1 5.0505 1.8027 -1.0262 30 1 4.4945 2.4994 0.5146 31 1 5.6034 1.1071 0.5162 32 1 5.3491 -3.5296 0.0046 33 1 3.6123 -6.2046 1.9480 34 1 1.9714 -4.1376 2.7194 35 1 0.8771 -5.2822 1.9065 36 1 1.6261 -7.0845 3.4359 37 1 2.7203 -5.9400 4.2489 38 1 1.0081 -7.6570 7.0207 39 1 1.1292 -2.9511 -0.0092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273515942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:42 Heat of formation + Delta-G solvation = -6.331285 kcal Electronic energy + Delta-G solvation = -24840.987541 eV Core-core repulsion = 21103.979267 eV Total energy + Delta-G solvation = -3737.008273 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.84443 -39.44217 -38.35717 -36.99138 -36.93948 -35.60885 -34.68887 -33.21757 -31.58479 -30.96082 -30.51715 -26.93277 -26.38306 -25.27583 -24.17787 -22.94119 -21.22403 -20.63871 -19.32913 -18.64589 -18.55018 -18.12541 -17.90742 -17.14809 -16.87223 -16.53948 -16.41582 -15.54635 -15.43469 -14.89993 -14.69761 -14.51320 -14.49885 -14.41328 -14.35278 -13.74736 -13.35694 -13.26663 -13.23372 -13.22026 -13.13440 -12.96969 -12.87198 -12.77939 -12.42980 -12.30319 -11.97828 -11.87935 -11.45516 -11.26940 -10.83620 -10.57708 -10.34762 -10.26114 -9.66016 -8.17101 -6.27049 -0.69405 -0.49024 -0.38541 0.93618 1.15235 1.46440 1.46786 1.57145 1.97204 2.31504 2.46276 2.73652 2.90735 2.95679 3.11059 3.18527 3.46343 3.67121 3.73171 4.09247 4.21441 4.22371 4.26396 4.29440 4.52271 4.55894 4.59748 4.72580 4.75520 4.89575 4.90103 5.02641 5.07643 5.33515 5.52297 5.55107 5.69541 5.85981 6.07912 6.17238 6.27218 6.52938 6.89429 7.42232 8.94888 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.003846 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.892666 B = 7278.089177 C = 8673.532371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.130 3.870 3 N -0.263 5.263 4 N -0.397 5.397 5 C 0.102 3.898 6 C 0.328 3.672 7 N -0.521 5.521 8 C 0.256 3.744 9 C -0.774 4.774 10 S 2.731 3.269 11 O -0.976 6.976 12 O -0.978 6.978 13 N -1.109 6.109 14 C 0.131 3.869 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.070 0.930 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.962 3.038 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.260 1.260 24 C 0.119 3.881 25 C -0.264 4.264 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.202 0.798 33 H 0.423 0.577 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.003 0.997 37 H 0.006 0.994 38 H 0.263 0.737 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 15.792 -13.678 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 N -0.076 5.076 4 N -0.185 5.185 5 C -0.037 4.037 6 C 0.088 3.912 7 N -0.237 5.237 8 C 0.084 3.916 9 C -0.865 4.865 10 S 2.819 3.181 11 O -0.967 6.967 12 O -0.968 6.968 13 N -0.871 5.871 14 C 0.006 3.994 15 C -0.020 4.020 16 C -0.579 4.579 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.787 3.213 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.184 1.184 24 C 0.091 3.909 25 C -0.275 4.275 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.219 0.781 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.281 17.194 -14.354 22.804 hybrid contribution -0.549 -0.707 1.303 1.580 sum 3.732 16.487 -13.052 21.357 Atomic orbital electron populations 1.20614 0.82057 1.05872 1.05588 1.24234 0.98622 0.86999 0.94959 1.76747 0.86365 1.23164 1.21364 1.48599 1.05609 1.01502 1.62770 1.22154 0.83699 0.93212 1.04640 1.19576 0.91165 0.87223 0.93280 1.66928 1.32985 1.03103 1.20692 1.22857 0.95534 0.89803 0.83425 1.31386 1.01285 1.27735 1.26108 1.00705 0.72723 0.72768 0.71900 1.93546 1.49004 1.76984 1.77137 1.93549 1.41706 1.84364 1.77190 1.55370 1.36773 1.64226 1.30717 1.21337 0.87782 0.98365 0.91951 1.19165 0.96379 0.94833 0.91665 1.21589 1.15027 1.17371 1.03941 0.91166 1.25902 0.99069 0.95037 0.99571 1.70087 1.40495 1.23711 1.22843 0.85493 0.79137 0.79235 0.77462 1.19929 1.21321 1.18437 1.20880 0.99973 0.90065 0.79966 1.20691 0.94242 0.95569 1.16970 0.87406 0.88051 0.88581 0.89544 0.87580 0.88555 0.78110 0.74073 0.91641 0.90626 0.97842 0.97515 0.92848 0.80458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.48 71.23 0.75 -0.34 16 2 C 0.13 2.84 7.44 44.77 0.33 3.17 16 3 N -0.26 -6.29 12.40 -43.75 -0.54 -6.83 16 4 N -0.40 -9.51 4.04 -366.55 -1.48 -10.99 16 5 C 0.10 1.57 11.44 127.77 1.46 3.03 16 6 C 0.33 8.92 7.97 134.12 1.07 9.99 16 7 N -0.52 -14.05 10.40 -192.97 -2.01 -16.05 16 8 C 0.26 6.34 10.65 84.88 0.90 7.25 16 9 C -0.77 -19.56 5.93 22.12 0.13 -19.43 16 10 S 2.73 75.60 5.74 -56.49 -0.32 75.28 16 11 O -0.98 -29.45 17.28 -128.00 -2.21 -31.66 16 12 O -0.98 -31.59 16.78 -128.00 -2.15 -33.74 16 13 N -1.11 -33.19 6.00 -187.48 -1.12 -34.31 16 14 C 0.13 4.69 6.16 86.38 0.53 5.22 16 15 C 0.02 0.87 5.11 29.85 0.15 1.02 16 16 C -0.54 -28.29 9.11 25.60 0.23 -28.05 16 17 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 18 C 0.00 0.13 5.46 84.65 0.46 0.60 16 19 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 20 Si 0.96 41.99 29.54 68.60 2.03 44.01 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 24 C 0.12 2.89 9.64 22.41 0.22 3.11 16 25 C -0.26 -6.72 6.35 -20.23 -0.13 -6.84 16 26 H 0.11 1.02 8.14 -2.38 -0.02 1.01 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.20 3.94 7.59 -2.91 -0.02 3.91 16 33 H 0.42 11.83 8.65 -96.75 -0.84 10.99 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.63 7.75 -2.39 -0.02 2.61 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.18 3.49 7.66 -2.91 -0.02 3.46 16 Total: -1.00 -73.48 353.50 -1.16 -74.64 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.25 Total: 14.72 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 6.11 Total: -21.28 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -4.87 Total: -121.98 kcal Atomic # 8 Polarization: -61.04 SS G_CDS: -4.36 Total: -65.40 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 75.60 SS G_CDS: -0.32 Total: 75.28 kcal Total: -73.48 -1.16 -74.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273515942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.308 kcal (2) G-P(sol) polarization free energy of solvation -73.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds