Wall clock time and date at job start Fri Apr 10 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36907 * 120.00005 * 2 1 4 4 H 1.08004 * 120.00137 * 137.94907 * 3 2 1 5 5 C 1.39020 * 119.99930 * 317.94650 * 3 2 1 6 6 N 1.31389 * 120.00012 * 43.89740 * 5 3 2 7 7 Si 1.86800 * 120.00017 * 223.88972 * 5 3 2 8 8 H 1.48495 * 109.46994 * 60.00048 * 7 5 3 9 9 H 1.48496 * 109.47274 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47281 * 300.00229 * 7 5 3 11 11 C 1.34771 * 119.99963 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00074 * 187.74885 * 11 2 1 13 13 C 1.47409 * 120.00040 * 7.74822 * 11 2 1 14 14 C 1.39862 * 120.07264 * 138.99972 * 13 11 2 15 15 C 1.37594 * 119.92341 * 180.02562 * 14 13 11 16 16 C 1.39237 * 120.07740 * 0.02562 * 15 14 13 17 17 N 1.39048 * 119.92745 * 179.97438 * 16 15 14 18 18 C 1.47066 * 126.30519 * 334.69279 * 17 16 15 19 19 C 1.54313 * 109.97110 * 150.90032 * 18 17 16 20 20 C 1.55613 * 104.19047 * 45.51144 * 19 18 17 21 21 S 1.67002 * 126.30146 * 155.00001 * 17 16 15 22 22 O 1.42100 * 105.13327 * 298.89525 * 21 17 16 23 23 O 1.42105 * 105.13518 * 68.44641 * 21 17 16 24 24 C 1.39234 * 120.14543 * 0.25441 * 16 15 14 25 25 C 1.37599 * 120.07748 * 359.44246 * 24 16 15 26 26 H 1.09000 * 109.46858 * 278.79102 * 1 2 3 27 27 H 1.09003 * 109.47347 * 38.78956 * 1 2 3 28 28 H 1.08995 * 109.47434 * 158.78853 * 1 2 3 29 29 H 0.96994 * 119.99758 * 180.02562 * 6 5 3 30 30 H 1.07993 * 120.04250 * 359.97438 * 14 13 11 31 31 H 1.08006 * 119.96301 * 179.97438 * 15 14 13 32 32 H 1.09003 * 109.35262 * 271.18580 * 18 17 16 33 33 H 1.09004 * 109.35231 * 30.82413 * 18 17 16 34 34 H 1.08996 * 110.65133 * 286.77130 * 19 18 17 35 35 H 1.09001 * 110.49314 * 164.16168 * 19 18 17 36 36 H 1.08998 * 111.16023 * 204.06229 * 20 19 18 37 37 H 1.08992 * 111.16988 * 79.79019 * 20 19 18 38 38 H 1.08001 * 119.96300 * 179.73042 * 24 16 15 39 39 H 1.07996 * 120.04069 * 180.25093 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.0210 1.3061 0.6265 5 6 1.7229 2.2346 -0.8064 6 7 0.4449 2.5318 -0.8763 7 14 2.9665 3.2217 -1.7906 8 1 3.6858 2.3199 -2.7257 9 1 2.2618 4.2763 -2.5628 10 1 3.9406 3.8540 -0.8650 11 6 2.1388 -1.1672 -0.0005 12 8 3.3469 -1.1721 0.1415 13 6 1.4119 -2.4378 -0.1732 14 6 1.9464 -3.4470 -0.9807 15 6 1.2650 -4.6316 -1.1402 16 6 0.0444 -4.8263 -0.4992 17 7 -0.6418 -6.0245 -0.6629 18 6 -0.5337 -6.9404 -1.8085 19 6 -0.8161 -8.3879 -1.3545 20 6 -2.0855 -8.2672 -0.4626 21 16 -1.7459 -6.6851 0.4018 22 8 -1.0191 -6.9006 1.6037 23 8 -2.8708 -5.8181 0.3551 24 6 -0.4934 -3.8216 0.3008 25 6 0.1858 -2.6368 0.4695 26 1 -0.3633 0.1571 1.0156 27 1 -0.3634 0.8010 -0.6438 28 1 -0.3634 -0.9580 -0.3718 29 1 0.1472 3.2634 -1.4393 30 1 2.8925 -3.2962 -1.4792 31 1 1.6770 -5.4112 -1.7640 32 1 -1.2558 -6.6508 -2.5719 33 1 0.4724 -6.8821 -2.2239 34 1 0.0205 -8.7795 -0.7760 35 1 -1.0148 -9.0260 -2.2156 36 1 -2.1506 -9.0952 0.2433 37 1 -2.9881 -8.1981 -1.0697 38 1 -1.4425 -3.9740 0.7931 39 1 -0.2300 -1.8594 1.0934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330499977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:00 Heat of formation + Delta-G solvation = -62.023685 kcal Electronic energy + Delta-G solvation = -25261.947882 eV Core-core repulsion = 21490.231854 eV Total energy + Delta-G solvation = -3771.716028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23134 -39.75026 -38.26123 -37.88670 -37.06330 -36.70237 -34.53122 -33.82928 -32.13577 -30.56652 -28.19705 -27.48147 -26.52757 -24.25782 -24.20787 -22.40929 -21.32067 -20.31195 -19.20700 -18.94462 -18.14492 -17.99965 -17.08800 -16.90945 -16.64798 -16.19970 -16.18302 -15.69562 -15.53262 -15.21928 -15.09590 -14.89710 -14.51576 -14.24247 -14.02351 -13.84236 -13.71634 -13.33211 -13.31273 -13.23481 -13.17356 -13.04060 -12.66167 -12.50114 -12.46199 -12.18286 -12.07923 -11.94167 -11.56158 -11.16111 -10.61751 -10.47823 -10.06731 -9.66325 -9.05823 -8.64973 -5.98215 -0.97200 0.02861 0.31090 1.26659 1.31820 1.40540 1.50092 2.01858 2.20080 2.54321 2.62010 2.73687 2.91117 3.14345 3.24303 3.51414 3.73799 3.82053 3.93536 4.01660 4.12695 4.26191 4.31716 4.45235 4.49284 4.61130 4.67080 4.81191 4.85894 4.95439 4.96045 5.04751 5.10564 5.23564 5.32818 5.44441 5.49029 5.61627 5.96385 6.17516 6.51934 7.08959 7.35727 8.01603 8.38129 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.003036 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.468868 B = 9220.761535 C = 9543.101922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.448 5.448 3 C -0.399 4.399 4 H 0.064 0.936 5 C 0.050 3.950 6 N -0.832 5.832 7 Si 0.953 3.047 8 H -0.280 1.280 9 H -0.261 1.261 10 H -0.269 1.269 11 C 0.481 3.519 12 O -0.628 6.628 13 C -0.155 4.155 14 C -0.048 4.048 15 C -0.145 4.145 16 C 0.223 3.777 17 N -0.933 5.933 18 C 0.049 3.951 19 C -0.119 4.119 20 C -0.543 4.543 21 S 2.527 3.473 22 O -0.994 6.994 23 O -0.991 6.991 24 C -0.194 4.194 25 C -0.064 4.064 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.284 0.716 30 H 0.133 0.867 31 H 0.173 0.827 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.159 0.841 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.128 0.872 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.639 -26.209 -7.471 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.165 5.165 3 C -0.525 4.525 4 H 0.082 0.918 5 C -0.160 4.160 6 N -0.464 5.464 7 Si 0.776 3.224 8 H -0.206 1.206 9 H -0.186 1.186 10 H -0.193 1.193 11 C 0.272 3.728 12 O -0.517 6.517 13 C -0.159 4.159 14 C -0.067 4.067 15 C -0.166 4.166 16 C 0.126 3.874 17 N -0.759 5.759 18 C -0.074 4.074 19 C -0.158 4.158 20 C -0.680 4.680 21 S 2.631 3.369 22 O -0.984 6.984 23 O -0.981 6.981 24 C -0.215 4.215 25 C -0.083 4.083 26 H 0.056 0.944 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.190 0.810 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.177 0.823 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.145 0.855 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.645 -25.561 -6.566 28.098 hybrid contribution 0.622 0.917 -0.189 1.124 sum -9.024 -24.644 -6.755 27.100 Atomic orbital electron populations 1.22912 0.80881 1.03770 1.01730 1.43510 1.06122 1.04461 1.62413 1.18926 1.12569 0.92089 1.28882 0.91818 1.26100 0.97436 0.97448 0.95060 1.70014 1.16959 1.26756 1.32687 0.85669 0.80131 0.77381 0.79255 1.20628 1.18569 1.19350 1.18692 0.86873 0.84461 0.82760 1.90546 1.16206 1.87837 1.57108 1.20006 0.96993 0.95399 1.03503 1.21114 0.99014 0.91576 0.95041 1.20961 0.93106 0.98291 1.04272 1.17182 0.90963 0.83770 0.95501 1.54829 1.57930 1.26986 1.36186 1.22877 1.08076 0.87805 0.88602 1.22926 0.94711 0.95178 1.02991 1.30673 1.09124 1.15032 1.13160 1.07747 0.73883 0.80522 0.74745 1.93594 1.71723 1.87006 1.46073 1.93589 1.52547 1.65405 1.86572 1.20942 1.01604 0.93751 1.05234 1.21322 0.92734 0.96791 0.97459 0.94408 0.87961 0.90712 0.90490 0.84920 0.80982 0.87557 0.86363 0.87714 0.82279 0.80821 0.80566 0.85464 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.38 8.57 127.77 1.09 3.47 16 2 N -0.45 -25.12 2.99 -662.67 -1.98 -27.11 16 3 C -0.40 -24.08 8.74 84.09 0.74 -23.35 16 4 H 0.06 4.14 7.94 -2.91 -0.02 4.12 16 5 C 0.05 2.71 5.32 84.95 0.45 3.16 16 6 N -0.83 -43.88 10.78 21.68 0.23 -43.64 16 7 Si 0.95 43.13 29.69 68.60 2.04 45.16 16 8 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 C 0.48 26.37 7.26 86.66 0.63 27.00 16 12 O -0.63 -38.83 16.84 -4.15 -0.07 -38.90 16 13 C -0.15 -6.74 5.30 -20.08 -0.11 -6.85 16 14 C -0.05 -1.70 9.63 22.51 0.22 -1.48 16 15 C -0.14 -3.86 9.51 22.36 0.21 -3.65 16 16 C 0.22 6.33 6.48 38.48 0.25 6.58 16 17 N -0.93 -18.26 3.45 -335.96 -1.16 -19.42 16 18 C 0.05 0.35 6.55 86.72 0.57 0.92 16 19 C -0.12 -0.05 6.81 31.94 0.22 0.17 16 20 C -0.54 -1.64 7.51 72.88 0.55 -1.09 16 21 S 2.53 49.28 5.44 -56.49 -0.31 48.98 16 22 O -0.99 -28.31 18.13 -127.76 -2.32 -30.63 16 23 O -0.99 -27.16 16.91 -127.76 -2.16 -29.32 16 24 C -0.19 -6.64 9.45 22.36 0.21 -6.43 16 25 C -0.06 -2.49 7.33 22.51 0.17 -2.33 16 26 H 0.04 1.75 7.79 -2.39 -0.02 1.74 16 27 H 0.10 5.22 5.12 -2.39 -0.01 5.21 16 28 H 0.07 3.18 4.57 -2.39 -0.01 3.17 16 29 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 30 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 31 H 0.17 2.91 6.67 -2.91 -0.02 2.89 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.12 0.53 6.61 -2.38 -0.02 0.51 16 34 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.16 -1.07 8.14 -2.39 -0.02 -1.09 16 36 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.18 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.13 4.28 6.47 -2.91 -0.02 4.26 16 39 H 0.14 5.26 5.73 -2.91 -0.02 5.24 16 Total: -1.00 -89.73 332.01 0.56 -89.17 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.09 Total: 9.59 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.19 Total: -3.88 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -2.91 Total: -90.17 kcal Atomic # 8 Polarization: -94.30 SS G_CDS: -4.55 Total: -98.85 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.04 Total: 45.16 kcal Atomic # 16 Polarization: 49.28 SS G_CDS: -0.31 Total: 48.98 kcal Total: -89.73 0.56 -89.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330499977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.146 kcal (2) G-P(sol) polarization free energy of solvation -89.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds