Wall clock time and date at job start Fri Apr 10 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46507 * 120.00244 * 2 1 4 4 C 1.50700 * 109.47001 * 89.99662 * 3 2 1 5 5 O 1.21277 * 120.00219 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99854 * 179.97438 * 4 3 2 7 7 C 1.47578 * 134.49388 * 179.97438 * 6 4 3 8 8 C 1.53950 * 86.11994 * 155.36188 * 7 6 4 9 9 O 1.42896 * 113.74296 * 269.15698 * 8 7 6 10 10 C 1.50694 * 113.74390 * 137.95283 * 8 7 6 11 11 H 1.08011 * 120.00001 * 4.89948 * 10 8 7 12 12 C 1.37879 * 120.00243 * 184.90058 * 10 8 7 13 13 N 1.31510 * 119.99770 * 185.02348 * 12 10 8 14 14 Si 1.86803 * 119.99763 * 5.02733 * 12 10 8 15 15 H 1.48498 * 109.46457 * 269.99676 * 14 12 10 16 16 H 1.48493 * 109.47321 * 29.99689 * 14 12 10 17 17 H 1.48498 * 109.46971 * 150.00272 * 14 12 10 18 18 C 1.47582 * 134.49111 * 0.02562 * 6 4 3 19 19 C 1.34781 * 120.00317 * 179.97438 * 2 1 3 20 20 O 1.21692 * 120.00558 * 186.29314 * 19 2 1 21 21 C 1.46590 * 119.99336 * 6.29368 * 19 2 1 22 22 C 1.36646 * 125.45292 * 187.13567 * 21 19 2 23 23 C 1.37475 * 113.29074 * 179.97438 * 22 21 19 24 24 C 1.33812 * 115.10620 * 0.02562 * 23 22 21 25 25 S 1.70619 * 110.95107 * 359.72379 * 24 23 22 26 26 H 1.09001 * 109.47010 * 95.94162 * 1 2 3 27 27 H 1.08997 * 109.47426 * 215.94365 * 1 2 3 28 28 H 1.09005 * 109.47251 * 335.94886 * 1 2 3 29 29 H 1.08993 * 109.46743 * 329.99474 * 3 2 1 30 30 H 1.08997 * 109.46883 * 209.99605 * 3 2 1 31 31 H 1.08997 * 113.76762 * 41.06489 * 7 6 4 32 32 H 1.08997 * 113.87144 * 269.67579 * 7 6 4 33 33 H 0.96701 * 114.00339 * 173.01632 * 9 8 7 34 34 H 0.96998 * 120.00682 * 354.99148 * 13 12 10 35 35 H 1.09002 * 113.77007 * 90.33841 * 18 6 4 36 36 H 1.09005 * 113.77154 * 318.93663 * 18 6 4 37 37 H 1.07998 * 123.35785 * 359.97438 * 22 21 19 38 38 H 1.08001 * 122.44663 * 180.02562 * 23 22 21 39 39 H 1.07995 * 124.52334 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0549 1.0211 2.3426 6 7 3.1116 2.8510 1.6671 7 6 3.5236 3.5653 2.8911 8 6 4.6288 4.1966 2.0251 9 8 5.8509 3.4561 2.0221 10 6 4.8338 5.6675 2.2805 11 1 4.2862 6.1600 3.0705 12 6 5.7206 6.3847 1.5057 13 7 5.9737 7.6434 1.7905 14 14 6.5622 5.5685 0.0513 15 1 7.8369 4.9523 0.4993 16 1 5.6745 4.5182 -0.5088 17 1 6.8445 6.5865 -0.9923 18 6 3.7164 3.8981 0.8210 19 6 2.1389 -1.1672 0.0005 20 8 3.3503 -1.1704 0.1160 21 6 1.4125 -2.4329 -0.1381 22 6 1.9602 -3.6787 -0.0148 23 6 1.0494 -4.6930 -0.1929 24 6 -0.2010 -4.2940 -0.4536 25 16 -0.3045 -2.5912 -0.4824 26 1 -0.3633 -0.1064 -1.0222 27 1 -0.3634 -0.8319 0.6032 28 1 -0.3634 0.9385 0.4188 29 1 1.6085 2.0283 -0.5139 30 1 3.1499 1.1383 -0.5138 31 1 3.9011 2.9100 3.6760 32 1 2.7861 4.2816 3.2531 33 1 6.5108 3.7886 1.3984 34 1 5.4836 8.0884 2.4995 35 1 3.0345 4.7119 0.5742 36 1 4.2480 3.5087 -0.0473 37 1 3.0045 -3.8496 0.2010 38 1 1.3231 -5.7356 -0.1272 39 1 -1.0343 -4.9607 -0.6185 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331517588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:27 Heat of formation + Delta-G solvation = -19.229549 kcal Electronic energy + Delta-G solvation = -25052.845641 eV Core-core repulsion = 21282.985306 eV Total energy + Delta-G solvation = -3769.860335 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34460 -39.47608 -37.94955 -37.31003 -35.49526 -34.37504 -32.62815 -30.89357 -29.44189 -27.96088 -26.85412 -25.68377 -25.00120 -24.21417 -21.38573 -20.04105 -19.30786 -18.71757 -18.20503 -18.00581 -16.92420 -16.56720 -16.05530 -15.99439 -15.56517 -15.31041 -15.00199 -14.57006 -14.06717 -13.65671 -13.48004 -13.32619 -13.30323 -13.09233 -13.00205 -12.80515 -12.58765 -12.36632 -12.22959 -12.04640 -11.72737 -11.38713 -10.90977 -10.81319 -10.38894 -10.15338 -10.02867 -9.72638 -9.48232 -9.16153 -9.04035 -8.87568 -8.68317 -8.50866 -8.04273 -6.72463 -4.49182 0.29783 1.23901 1.67766 2.18276 2.58958 3.00290 3.10141 3.11531 3.13077 3.30929 3.46600 4.16401 4.32812 4.66919 4.71239 4.75290 4.82911 5.02021 5.06156 5.10610 5.18530 5.25407 5.37012 5.41585 5.56571 5.71058 5.90689 5.96336 6.04479 6.09204 6.09794 6.22255 6.32592 6.43083 6.59955 7.09844 7.48538 7.97239 8.05116 8.25532 8.47882 8.55362 8.60226 9.26506 10.63250 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.002861 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.049104 B = 9785.949888 C =10026.489219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.596 5.596 3 C 0.105 3.895 4 C 0.515 3.485 5 O -0.550 6.550 6 N -0.633 5.633 7 C 0.128 3.872 8 C 0.197 3.803 9 O -0.554 6.554 10 C -0.610 4.610 11 H 0.071 0.929 12 C 0.034 3.966 13 N -0.891 5.891 14 Si 1.031 2.969 15 H -0.275 1.275 16 H -0.266 1.266 17 H -0.280 1.280 18 C 0.057 3.943 19 C 0.593 3.407 20 O -0.519 6.519 21 C -0.261 4.261 22 C -0.056 4.056 23 C -0.150 4.150 24 C -0.258 4.258 25 S 0.222 5.778 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.355 0.645 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.511 -17.748 -9.327 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.328 5.328 3 C -0.021 4.021 4 C 0.302 3.698 5 O -0.429 6.429 6 N -0.368 5.368 7 C 0.006 3.994 8 C 0.156 3.844 9 O -0.363 6.363 10 C -0.648 4.648 11 H 0.089 0.911 12 C -0.173 4.173 13 N -0.524 5.524 14 Si 0.859 3.141 15 H -0.202 1.202 16 H -0.192 1.192 17 H -0.206 1.206 18 C -0.066 4.066 19 C 0.381 3.619 20 O -0.395 6.395 21 C -0.382 4.382 22 C -0.089 4.089 23 C -0.180 4.180 24 C -0.395 4.395 25 S 0.490 5.510 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.205 0.795 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.171 0.829 38 H 0.159 0.841 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.583 -17.383 -9.811 24.720 hybrid contribution 0.100 -0.991 1.101 1.485 sum -14.483 -18.374 -8.711 24.965 Atomic orbital electron populations 1.21982 0.79378 1.04244 1.02160 1.47152 1.06757 1.05097 1.73792 1.21282 0.99845 0.85510 0.95435 1.20583 0.77283 0.80481 0.91436 1.90650 1.52089 1.53934 1.46221 1.50137 1.54557 1.20014 1.12058 1.23239 0.94301 0.92594 0.89257 1.20502 0.81924 0.91457 0.90501 1.86475 1.26140 1.58765 1.64894 1.22269 1.29851 0.91667 1.21005 0.91051 1.25822 0.95001 0.96061 1.00430 1.70765 1.38483 1.11569 1.31587 0.84313 0.77072 0.76071 0.76652 1.20217 1.19208 1.20571 1.24802 0.96008 0.87991 0.97818 1.16964 0.86636 0.82033 0.76299 1.90862 1.13230 1.86421 1.49030 1.24561 0.98072 0.97616 1.17917 1.20810 1.01553 0.89899 0.96656 1.20011 0.92234 1.00904 1.04900 1.25808 1.02044 1.03444 1.08188 1.83461 1.04526 0.98107 1.64939 0.91372 0.90317 0.89040 0.87308 0.86879 0.90861 0.89166 0.79497 0.91594 0.88786 0.90748 0.82943 0.84120 0.81837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 8.82 59.84 0.53 1.17 16 2 N -0.60 -8.32 2.36 -184.55 -0.44 -8.76 16 3 C 0.11 1.55 5.56 -5.19 -0.03 1.53 16 4 C 0.51 9.96 8.12 -10.99 -0.09 9.87 16 5 O -0.55 -12.40 17.16 5.56 0.10 -12.31 16 6 N -0.63 -12.63 3.61 -178.26 -0.64 -13.28 16 7 C 0.13 2.73 8.22 -2.97 -0.02 2.70 16 8 C 0.20 4.49 1.06 -90.82 -0.10 4.40 16 9 O -0.55 -13.16 13.43 -35.23 -0.47 -13.64 16 10 C -0.61 -15.63 9.04 -34.44 -0.31 -15.94 16 11 H 0.07 1.95 8.04 -52.48 -0.42 1.53 16 12 C 0.03 0.90 5.47 -17.82 -0.10 0.80 16 13 N -0.89 -25.16 13.70 55.43 0.76 -24.40 16 14 Si 1.03 21.89 24.81 -169.99 -4.22 17.68 16 15 H -0.28 -5.64 6.95 56.52 0.39 -5.25 16 16 H -0.27 -4.96 4.78 56.52 0.27 -4.69 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 C 0.06 1.09 6.73 -2.95 -0.02 1.07 16 19 C 0.59 9.45 7.62 -12.89 -0.10 9.35 16 20 O -0.52 -10.28 16.50 5.20 0.09 -10.20 16 21 C -0.26 -3.30 6.20 -36.79 -0.23 -3.53 16 22 C -0.06 -0.64 10.02 -40.43 -0.41 -1.05 16 23 C -0.15 -1.34 10.15 -41.41 -0.42 -1.76 16 24 C -0.26 -2.02 10.92 29.18 0.32 -1.70 16 25 S 0.22 1.86 17.90 -107.50 -1.92 -0.07 16 26 H 0.07 0.46 7.48 -51.93 -0.39 0.08 16 27 H 0.08 0.75 5.15 -27.81 -0.14 0.60 16 28 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 29 H 0.11 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.11 1.73 7.52 -51.93 -0.39 1.34 16 31 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 33 H 0.35 7.78 4.34 45.56 0.20 7.98 16 34 H 0.27 7.69 8.72 -40.82 -0.36 7.33 16 35 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 36 H 0.07 1.34 6.48 -51.93 -0.34 1.01 16 37 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -34.58 338.55 -6.77 -41.35 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.14 Total: 11.60 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.97 Total: 6.92 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.32 Total: -46.44 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.29 Total: -36.14 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.22 Total: 17.68 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.92 Total: -0.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.58 -6.77 -41.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331517588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.118 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds