Wall clock time and date at job start Fri Apr 10 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46507 * 120.00244 * 2 1 4 4 C 1.50700 * 109.47001 * 89.99662 * 3 2 1 5 5 O 1.21277 * 120.00219 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99854 * 179.97438 * 4 3 2 7 7 C 1.47578 * 134.49388 * 179.97438 * 6 4 3 8 8 C 1.53950 * 86.11994 * 155.36188 * 7 6 4 9 9 O 1.42896 * 113.74296 * 269.15698 * 8 7 6 10 10 C 1.50694 * 113.74390 * 137.95283 * 8 7 6 11 11 H 1.08011 * 120.00001 * 4.89948 * 10 8 7 12 12 C 1.37879 * 120.00243 * 184.90058 * 10 8 7 13 13 N 1.31510 * 119.99770 * 185.02348 * 12 10 8 14 14 Si 1.86803 * 119.99763 * 5.02733 * 12 10 8 15 15 H 1.48498 * 109.46457 * 269.99676 * 14 12 10 16 16 H 1.48493 * 109.47321 * 29.99689 * 14 12 10 17 17 H 1.48498 * 109.46971 * 150.00272 * 14 12 10 18 18 C 1.47582 * 134.49111 * 0.02562 * 6 4 3 19 19 C 1.34781 * 120.00317 * 179.97438 * 2 1 3 20 20 O 1.21692 * 120.00558 * 186.29314 * 19 2 1 21 21 C 1.46590 * 119.99336 * 6.29368 * 19 2 1 22 22 C 1.36646 * 125.45292 * 187.13567 * 21 19 2 23 23 C 1.37475 * 113.29074 * 179.97438 * 22 21 19 24 24 C 1.33812 * 115.10620 * 0.02562 * 23 22 21 25 25 S 1.70619 * 110.95107 * 359.72379 * 24 23 22 26 26 H 1.09001 * 109.47010 * 95.94162 * 1 2 3 27 27 H 1.08997 * 109.47426 * 215.94365 * 1 2 3 28 28 H 1.09005 * 109.47251 * 335.94886 * 1 2 3 29 29 H 1.08993 * 109.46743 * 329.99474 * 3 2 1 30 30 H 1.08997 * 109.46883 * 209.99605 * 3 2 1 31 31 H 1.08997 * 113.76762 * 41.06489 * 7 6 4 32 32 H 1.08997 * 113.87144 * 269.67579 * 7 6 4 33 33 H 0.96701 * 114.00339 * 173.01632 * 9 8 7 34 34 H 0.96998 * 120.00682 * 354.99148 * 13 12 10 35 35 H 1.09002 * 113.77007 * 90.33841 * 18 6 4 36 36 H 1.09005 * 113.77154 * 318.93663 * 18 6 4 37 37 H 1.07998 * 123.35785 * 359.97438 * 22 21 19 38 38 H 1.08001 * 122.44663 * 180.02562 * 23 22 21 39 39 H 1.07995 * 124.52334 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0549 1.0211 2.3426 6 7 3.1116 2.8510 1.6671 7 6 3.5236 3.5653 2.8911 8 6 4.6288 4.1966 2.0251 9 8 5.8509 3.4561 2.0221 10 6 4.8338 5.6675 2.2805 11 1 4.2862 6.1600 3.0705 12 6 5.7206 6.3847 1.5057 13 7 5.9737 7.6434 1.7905 14 14 6.5622 5.5685 0.0513 15 1 7.8369 4.9523 0.4993 16 1 5.6745 4.5182 -0.5088 17 1 6.8445 6.5865 -0.9923 18 6 3.7164 3.8981 0.8210 19 6 2.1389 -1.1672 0.0005 20 8 3.3503 -1.1704 0.1160 21 6 1.4125 -2.4329 -0.1381 22 6 1.9602 -3.6787 -0.0148 23 6 1.0494 -4.6930 -0.1929 24 6 -0.2010 -4.2940 -0.4536 25 16 -0.3045 -2.5912 -0.4824 26 1 -0.3633 -0.1064 -1.0222 27 1 -0.3634 -0.8319 0.6032 28 1 -0.3634 0.9385 0.4188 29 1 1.6085 2.0283 -0.5139 30 1 3.1499 1.1383 -0.5138 31 1 3.9011 2.9100 3.6760 32 1 2.7861 4.2816 3.2531 33 1 6.5108 3.7886 1.3984 34 1 5.4836 8.0884 2.4995 35 1 3.0345 4.7119 0.5742 36 1 4.2480 3.5087 -0.0473 37 1 3.0045 -3.8496 0.2010 38 1 1.3231 -5.7356 -0.1272 39 1 -1.0343 -4.9607 -0.6185 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331517588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:27 Heat of formation + Delta-G solvation = -46.603343 kcal Electronic energy + Delta-G solvation = -25054.032658 eV Core-core repulsion = 21282.985306 eV Total energy + Delta-G solvation = -3771.047352 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67795 -40.89257 -39.26328 -38.36860 -36.65760 -36.15797 -34.65034 -32.01513 -30.69981 -29.20405 -27.89020 -27.22337 -26.63196 -25.24136 -22.50403 -21.62775 -20.25205 -20.09751 -19.95456 -19.16183 -18.37653 -17.87890 -17.51557 -17.05702 -16.82628 -16.60535 -16.18064 -15.89178 -15.65483 -15.11256 -14.78392 -14.53387 -14.38415 -14.18956 -14.10191 -13.95139 -13.87820 -13.71568 -13.54300 -13.21850 -13.07891 -12.90528 -12.54380 -12.10481 -11.68981 -11.58282 -11.40051 -11.32586 -11.18706 -10.97109 -10.47852 -10.08726 -9.76632 -9.68978 -9.38360 -8.80854 -6.59614 -0.50499 0.50008 1.00002 1.31072 1.41508 1.46780 1.52515 1.55649 1.63489 2.01344 2.13162 2.40799 2.85021 3.22282 3.42868 3.51669 3.80475 3.96406 4.05480 4.15743 4.24066 4.31352 4.35371 4.41080 4.46603 4.54722 4.59033 4.64880 4.68027 4.74744 4.92053 5.00999 5.15179 5.24725 5.36254 5.56605 5.90682 6.08162 6.38701 6.68966 6.77090 6.86685 7.04027 7.25798 8.53787 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.002861 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.049104 B = 9785.949888 C =10026.489219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.596 5.596 3 C 0.110 3.890 4 C 0.509 3.491 5 O -0.589 6.589 6 N -0.633 5.633 7 C 0.123 3.877 8 C 0.183 3.817 9 O -0.567 6.567 10 C -0.611 4.611 11 H 0.038 0.962 12 C -0.011 4.011 13 N -0.925 5.925 14 Si 1.062 2.938 15 H -0.264 1.264 16 H -0.222 1.222 17 H -0.281 1.281 18 C 0.074 3.926 19 C 0.583 3.417 20 O -0.577 6.577 21 C -0.310 4.310 22 C -0.065 4.065 23 C -0.164 4.164 24 C -0.245 4.245 25 S 0.287 5.713 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.157 0.843 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.363 0.637 34 H 0.258 0.742 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.162 0.838 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.032 -19.787 -12.052 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.327 5.327 3 C -0.016 4.016 4 C 0.299 3.701 5 O -0.470 6.470 6 N -0.368 5.368 7 C 0.000 4.000 8 C 0.142 3.858 9 O -0.377 6.377 10 C -0.649 4.649 11 H 0.056 0.944 12 C -0.212 4.212 13 N -0.559 5.559 14 Si 0.883 3.117 15 H -0.191 1.191 16 H -0.145 1.145 17 H -0.207 1.207 18 C -0.048 4.048 19 C 0.373 3.627 20 O -0.458 6.458 21 C -0.430 4.430 22 C -0.100 4.100 23 C -0.193 4.193 24 C -0.382 4.382 25 S 0.556 5.444 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.174 0.826 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.214 0.786 34 H 0.068 0.932 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.155 0.845 38 H 0.179 0.821 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -17.173 -19.419 -12.538 28.796 hybrid contribution 0.774 -0.391 2.084 2.257 sum -16.399 -19.810 -10.454 27.760 Atomic orbital electron populations 1.22318 0.76781 1.04970 1.04490 1.47346 1.08434 1.04272 1.72667 1.21391 1.01043 0.87064 0.92104 1.21508 0.76082 0.79365 0.93146 1.90628 1.53620 1.54750 1.47985 1.50123 1.54870 1.20497 1.11266 1.23197 0.94435 0.92786 0.89592 1.20585 0.82276 0.89563 0.93402 1.86460 1.26854 1.58752 1.65663 1.22354 1.29312 0.93413 1.19863 0.94358 1.27260 0.95508 0.95666 1.02740 1.70905 1.39787 1.13045 1.32190 0.83991 0.77549 0.76488 0.73665 1.19052 1.14543 1.20725 1.24652 0.95153 0.88278 0.96698 1.17540 0.86336 0.83515 0.75328 1.90807 1.15673 1.87422 1.51928 1.24497 1.01183 0.96358 1.20971 1.20960 1.01617 0.90736 0.96656 1.20143 0.92229 1.01333 1.05637 1.26302 1.02482 1.03968 1.05477 1.83060 1.00232 0.98067 1.63056 0.87868 0.90317 0.87959 0.82578 0.87263 0.92528 0.88221 0.78617 0.93221 0.86869 0.88482 0.84544 0.82080 0.78464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 8.82 127.77 1.13 2.05 16 2 N -0.60 -15.57 2.36 -856.01 -2.02 -17.59 16 3 C 0.11 2.98 5.56 85.63 0.48 3.46 16 4 C 0.51 19.07 8.12 87.66 0.71 19.78 16 5 O -0.59 -26.51 17.16 -3.02 -0.05 -26.56 16 6 N -0.63 -24.35 3.61 -840.12 -3.03 -27.38 16 7 C 0.12 5.24 8.22 86.48 0.71 5.95 16 8 C 0.18 8.18 1.06 -10.87 -0.01 8.17 16 9 O -0.57 -26.43 13.43 -148.98 -2.00 -28.43 16 10 C -0.61 -31.73 9.04 25.60 0.23 -31.50 16 11 H 0.04 2.18 8.04 -2.90 -0.02 2.16 16 12 C -0.01 -0.59 5.47 84.66 0.46 -0.13 16 13 N -0.92 -53.47 13.70 21.45 0.29 -53.17 16 14 Si 1.06 42.46 24.81 68.60 1.70 44.16 16 15 H -0.26 -10.11 6.95 99.48 0.69 -9.42 16 16 H -0.22 -7.21 4.78 99.48 0.48 -6.73 16 17 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 18 C 0.07 2.66 6.73 86.49 0.58 3.24 16 19 C 0.58 18.49 7.62 86.42 0.66 19.14 16 20 O -0.58 -23.65 16.50 -4.32 -0.07 -23.72 16 21 C -0.31 -7.56 6.20 24.08 0.15 -7.41 16 22 C -0.06 -1.48 10.02 21.72 0.22 -1.27 16 23 C -0.16 -2.57 10.15 21.08 0.21 -2.35 16 24 C -0.25 -2.90 10.92 66.81 0.73 -2.17 16 25 S 0.29 3.84 17.90 -56.49 -1.01 2.83 16 26 H 0.10 0.94 7.48 -2.39 -0.02 0.92 16 27 H 0.08 1.27 5.15 -17.73 -0.09 1.18 16 28 H 0.10 1.45 8.03 -2.38 -0.02 1.43 16 29 H 0.16 2.69 8.07 -2.39 -0.02 2.67 16 30 H 0.11 3.12 7.52 -2.39 -0.02 3.10 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.10 4.00 8.09 -2.39 -0.02 3.98 16 33 H 0.36 15.23 4.34 -74.06 -0.32 14.91 16 34 H 0.26 15.19 8.72 -92.71 -0.81 14.38 16 35 H 0.11 3.66 8.09 -2.39 -0.02 3.64 16 36 H 0.10 3.07 6.48 -2.38 -0.02 3.05 16 37 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 38 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -80.14 338.55 0.48 -79.65 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.41 Total: 33.25 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.26 Total: 16.96 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -4.76 Total: -98.15 kcal Atomic # 8 Polarization: -76.59 SS G_CDS: -2.12 Total: -78.71 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.70 Total: 44.16 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.01 Total: 2.83 kcal Total: -80.14 0.48 -79.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331517588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.050 kcal (2) G-P(sol) polarization free energy of solvation -80.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds