Wall clock time and date at job start Fri Apr 10 2020 18:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47531 * 2 1 4 4 N 1.46501 * 109.47512 * 119.99993 * 2 1 3 5 5 C 1.34774 * 120.00193 * 275.00379 * 4 2 1 6 6 O 1.21704 * 119.99680 * 359.97438 * 5 4 2 7 7 C 1.46579 * 120.00354 * 179.97438 * 5 4 2 8 8 C 1.36641 * 125.45966 * 179.97438 * 7 5 4 9 9 C 1.37471 * 113.29841 * 179.97438 * 8 7 5 10 10 C 1.33816 * 115.10169 * 359.97438 * 9 8 7 11 11 S 1.70620 * 110.95201 * 359.77162 * 10 9 8 12 12 C 1.50699 * 109.47392 * 240.00096 * 2 1 3 13 13 O 1.21283 * 120.00345 * 266.29842 * 12 2 1 14 14 N 1.34780 * 120.00322 * 86.29157 * 12 2 1 15 15 C 1.47069 * 136.05974 * 184.61394 * 14 12 2 16 16 C 1.53242 * 88.08073 * 207.19971 * 15 14 12 17 17 O 1.42905 * 114.19325 * 87.72709 * 16 15 14 18 18 C 1.50691 * 114.32733 * 220.46475 * 16 15 14 19 19 H 1.08001 * 119.99852 * 93.76094 * 18 16 15 20 20 C 1.37878 * 120.00332 * 273.76635 * 18 16 15 21 21 N 1.31508 * 119.99730 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00033 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47288 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47068 * 119.99573 * 22 20 18 25 25 H 1.48502 * 109.46829 * 239.99899 * 22 20 18 26 26 C 1.47071 * 136.05287 * 4.97885 * 14 12 2 27 27 H 1.08997 * 109.47222 * 305.27947 * 1 2 3 28 28 H 1.09008 * 109.47435 * 65.27594 * 1 2 3 29 29 H 1.09000 * 109.47356 * 185.27594 * 1 2 3 30 30 H 0.97001 * 119.99958 * 94.99632 * 4 2 1 31 31 H 1.08004 * 123.35609 * 359.94713 * 8 7 5 32 32 H 1.07997 * 122.45195 * 180.02562 * 9 8 7 33 33 H 1.08002 * 124.52512 * 179.97438 * 10 9 8 34 34 H 1.08994 * 113.46505 * 321.93460 * 15 14 12 35 35 H 1.09001 * 113.46677 * 92.37574 * 15 14 12 36 36 H 0.96699 * 113.99610 * 86.30462 * 17 16 15 37 37 H 0.97004 * 119.99928 * 180.02562 * 21 20 18 38 38 H 1.09000 * 113.46775 * 267.62616 * 26 14 12 39 39 H 1.08999 * 113.46584 * 38.01349 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8579 1.1626 2.4117 7 6 2.6352 -0.7094 3.5541 8 6 2.8084 -0.1389 4.7836 9 6 3.2790 -1.0183 5.7296 10 6 3.4843 -2.2662 5.2923 11 16 3.0841 -2.4072 3.6397 12 6 2.0323 -0.7104 -1.2304 13 8 2.2984 -1.8927 -1.1820 14 7 2.1858 -0.0319 -2.3849 15 6 2.5539 -0.3665 -3.7689 16 6 3.0853 1.0630 -3.9186 17 8 4.4479 1.2260 -3.5199 18 6 2.7718 1.7062 -5.2448 19 1 1.8904 2.3210 -5.3518 20 6 3.6101 1.5096 -6.3217 21 7 4.6836 0.7612 -6.1913 22 14 3.2218 2.3075 -7.9655 23 1 1.9676 3.0942 -7.8499 24 1 4.3370 3.2076 -8.3546 25 1 3.0517 1.2547 -8.9988 26 6 2.0652 1.3698 -2.8134 27 1 -0.3633 0.5935 0.8389 28 1 -0.3634 0.4298 -0.9335 29 1 -0.3634 -1.0233 0.0945 30 1 2.2490 -1.6318 1.1526 31 1 2.5970 0.8997 4.9914 32 1 3.4684 -0.7238 6.7512 33 1 3.8511 -3.0768 5.9046 34 1 3.3317 -1.1268 -3.8395 35 1 1.6961 -0.5797 -4.4067 36 1 5.0880 1.0320 -4.2183 37 1 5.2736 0.6232 -6.9488 38 1 1.0759 1.6237 -3.1942 39 1 2.4275 2.0828 -2.0728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331558310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:30 Heat of formation + Delta-G solvation = -66.689574 kcal Electronic energy + Delta-G solvation = -24700.371079 eV Core-core repulsion = 20928.452723 eV Total energy + Delta-G solvation = -3771.918356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73628 -40.81974 -39.34920 -38.41036 -36.13671 -35.95477 -34.13321 -32.70628 -30.70696 -30.04608 -27.45250 -26.90642 -26.32295 -24.79338 -22.55792 -21.74439 -20.84746 -20.00853 -19.72768 -19.11406 -17.92806 -17.81656 -17.11194 -16.82977 -16.68743 -16.60051 -16.12357 -15.97633 -15.53825 -15.03017 -14.74984 -14.61792 -14.44370 -14.03608 -13.76646 -13.71718 -13.57125 -13.45493 -13.36507 -13.20930 -12.90994 -12.81780 -12.61283 -12.22652 -12.17641 -11.94509 -11.53038 -11.37792 -10.94972 -10.68190 -10.49231 -10.29208 -9.90257 -9.67790 -9.58940 -8.28200 -6.45767 -0.54100 0.44704 0.91864 1.29464 1.39465 1.46286 1.50586 1.57387 1.61629 2.05856 2.14684 2.40369 2.94617 3.18124 3.63599 3.71386 3.92935 3.94918 4.11836 4.13660 4.32869 4.42506 4.51652 4.52945 4.59539 4.64755 4.72065 4.85776 4.91272 4.99585 5.02836 5.09201 5.18986 5.21918 5.34982 5.72846 5.88175 6.20162 6.62043 6.73004 6.85965 6.94815 7.28394 7.44303 8.78349 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.028159 B = 0.002587 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.103039 B =10821.812908 C =10966.882217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 H 0.103 0.897 4 N -0.709 5.709 5 C 0.593 3.407 6 O -0.563 6.563 7 C -0.306 4.306 8 C -0.050 4.050 9 C -0.158 4.158 10 C -0.212 4.212 11 S 0.213 5.787 12 C 0.530 3.470 13 O -0.585 6.585 14 N -0.629 5.629 15 C 0.083 3.917 16 C 0.216 3.784 17 O -0.587 6.587 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.025 3.975 21 N -0.923 5.923 22 Si 0.974 3.026 23 H -0.260 1.260 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.110 3.890 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.409 0.591 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.203 0.797 34 H 0.036 0.964 35 H 0.094 0.906 36 H 0.388 0.612 37 H 0.275 0.725 38 H 0.122 0.878 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.682 -4.560 18.876 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.121 0.879 4 N -0.362 5.362 5 C 0.382 3.618 6 O -0.444 6.444 7 C -0.426 4.426 8 C -0.085 4.085 9 C -0.188 4.188 10 C -0.350 4.350 11 S 0.480 5.520 12 C 0.320 3.680 13 O -0.467 6.467 14 N -0.361 5.361 15 C -0.040 4.040 16 C 0.174 3.826 17 O -0.400 6.400 18 C -0.584 4.584 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.564 5.564 22 Si 0.799 3.201 23 H -0.183 1.183 24 H -0.209 1.209 25 H -0.207 1.207 26 C -0.011 4.011 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.246 0.754 31 H 0.171 0.829 32 H 0.193 0.807 33 H 0.220 0.780 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.244 0.756 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.864 -5.581 18.531 20.223 hybrid contribution 0.644 0.674 -0.579 1.098 sum -5.220 -4.907 17.952 19.329 Atomic orbital electron populations 1.22010 0.90103 1.03763 1.04436 1.20696 0.97493 0.97018 0.81747 0.87928 1.45699 1.67419 1.14617 1.08475 1.17271 0.76577 0.85780 0.82180 1.90795 1.52227 1.16137 1.85248 1.24468 1.19199 1.00509 0.98468 1.21073 0.95308 1.01962 0.90118 1.20297 1.03871 0.92145 1.02452 1.25828 1.06200 1.03098 0.99859 1.83314 1.58374 1.03783 1.06522 1.20435 0.77305 0.86337 0.83956 1.90614 1.54066 1.17049 1.84998 1.49707 1.65652 1.12542 1.08240 1.24035 0.98797 1.01891 0.79303 1.19832 0.80647 0.90062 0.92024 1.86009 1.17500 1.91740 1.44730 1.21736 1.10715 1.31924 0.94038 0.89745 1.25875 0.94322 0.94290 1.02978 1.69361 1.14593 1.38964 1.33474 0.85258 0.78558 0.78093 0.78225 1.18349 1.20894 1.20737 1.23513 1.00650 0.81491 0.95482 0.90092 0.89583 0.91146 0.75365 0.82853 0.80743 0.78045 0.94511 0.88823 0.75600 0.91513 0.86046 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.47 71.98 0.68 -3.01 16 2 C 0.14 4.43 2.84 44.24 0.13 4.56 16 3 H 0.10 3.46 7.37 -2.39 -0.02 3.44 16 4 N -0.71 -21.58 5.05 -450.18 -2.27 -23.86 16 5 C 0.59 18.11 7.75 86.42 0.67 18.78 16 6 O -0.56 -20.16 16.50 -4.36 -0.07 -20.23 16 7 C -0.31 -7.44 6.45 24.07 0.16 -7.28 16 8 C -0.05 -1.01 10.01 21.71 0.22 -0.79 16 9 C -0.16 -2.20 10.15 21.08 0.21 -1.99 16 10 C -0.21 -2.70 10.92 66.81 0.73 -1.97 16 11 S 0.21 3.84 22.16 -56.49 -1.25 2.59 16 12 C 0.53 20.71 7.28 87.66 0.64 21.35 16 13 O -0.59 -25.81 16.81 -3.04 -0.05 -25.86 16 14 N -0.63 -25.58 3.69 -859.15 -3.17 -28.76 16 15 C 0.08 3.75 8.02 83.10 0.67 4.41 16 16 C 0.22 10.14 1.57 -11.29 -0.02 10.12 16 17 O -0.59 -30.77 13.54 -148.98 -2.02 -32.78 16 18 C -0.55 -26.30 8.69 25.60 0.22 -26.08 16 19 H 0.08 3.80 7.81 -2.91 -0.02 3.78 16 20 C 0.03 1.23 5.39 84.66 0.46 1.69 16 21 N -0.92 -47.56 11.01 21.45 0.24 -47.32 16 22 Si 0.97 38.89 29.54 68.60 2.03 40.92 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 24 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 26 C 0.11 4.21 7.72 83.19 0.64 4.85 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.41 12.02 6.91 -92.71 -0.64 11.38 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 3.95 8.10 -2.39 -0.02 3.93 16 36 H 0.39 21.09 6.32 -74.06 -0.47 20.62 16 37 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 38 H 0.12 3.87 8.10 -2.39 -0.02 3.85 16 39 H 0.08 2.82 8.09 -2.39 -0.02 2.80 16 Total: -1.00 -64.35 353.62 -1.18 -65.53 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: 0.00 Total: 45.14 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 5.40 Total: 24.63 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -5.21 Total: -99.93 kcal Atomic # 8 Polarization: -76.73 SS G_CDS: -2.14 Total: -78.87 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.25 Total: 2.59 kcal Total: -64.35 -1.18 -65.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331558310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.163 kcal (2) G-P(sol) polarization free energy of solvation -64.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds