Wall clock time and date at job start Fri Apr 10 2020 18:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 119.99973 * 2 1 4 4 H 1.48491 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46657 * 299.99671 * 3 2 1 6 6 H 1.48493 * 109.47144 * 59.99537 * 3 2 1 7 7 C 1.38811 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99845 * 197.58790 * 7 2 1 9 9 N 1.36936 * 119.99998 * 17.58573 * 7 2 1 10 10 C 1.46962 * 120.59554 * 208.16142 * 9 7 2 11 11 C 1.53369 * 108.63706 * 235.20560 * 10 9 7 12 12 N 1.46970 * 108.63497 * 310.57870 * 11 10 9 13 13 S 1.65597 * 120.59257 * 235.20152 * 12 11 10 14 14 O 1.42099 * 104.28015 * 333.92618 * 13 12 11 15 15 O 1.42104 * 104.27688 * 206.07316 * 13 12 11 16 16 C 1.81399 * 104.45087 * 89.99820 * 13 12 11 17 17 C 1.52994 * 109.47441 * 179.97438 * 16 13 12 18 18 C 1.53781 * 113.61805 * 272.50121 * 17 16 13 19 19 C 1.53773 * 87.08486 * 220.01800 * 18 17 16 20 20 F 1.39901 * 113.61578 * 270.88388 * 19 18 17 21 21 F 1.39893 * 113.61899 * 139.97963 * 19 18 17 22 22 C 1.53778 * 113.61847 * 175.00335 * 17 16 13 23 23 C 1.46966 * 118.81249 * 55.47866 * 12 11 10 24 24 C 1.46970 * 120.59154 * 28.14318 * 9 7 2 25 25 H 0.97000 * 120.00387 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.60641 * 115.46426 * 10 9 7 27 27 H 1.09002 * 109.75102 * 355.03362 * 10 9 7 28 28 H 1.09000 * 109.61522 * 190.83252 * 11 10 9 29 29 H 1.09010 * 109.61036 * 70.32018 * 11 10 9 30 30 H 1.09001 * 109.47376 * 300.00458 * 16 13 12 31 31 H 1.09011 * 109.46774 * 60.00034 * 16 13 12 32 32 H 1.09004 * 112.84952 * 43.80670 * 17 16 13 33 33 H 1.09009 * 113.61394 * 334.56747 * 18 17 16 34 34 H 1.08998 * 113.61643 * 105.46342 * 18 17 16 35 35 H 1.09003 * 113.61297 * 254.53046 * 22 17 16 36 36 H 1.09003 * 113.61063 * 25.34263 * 22 17 16 37 37 H 1.08998 * 109.61206 * 64.26234 * 23 12 11 38 38 H 1.08996 * 109.60923 * 184.78177 * 23 12 11 39 39 H 1.08997 * 109.60770 * 244.53497 * 24 9 7 40 40 H 1.08992 * 109.60921 * 5.04901 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0524 -1.2238 0.2832 9 7 1.3736 -2.3605 -0.3572 10 6 1.8129 -3.6537 0.1852 11 6 2.1166 -4.5981 -0.9844 12 7 0.9815 -4.5702 -1.9175 13 16 0.2116 -5.9711 -2.3502 14 8 1.1997 -6.9791 -2.1862 15 8 -0.3401 -5.6872 -3.6287 16 6 -1.1049 -6.1636 -1.1172 17 6 -1.8982 -7.4380 -1.4128 18 6 -3.0575 -7.2268 -2.4008 19 6 -3.8818 -8.1753 -1.5145 20 9 -3.7598 -9.5227 -1.8707 21 9 -5.2118 -7.7741 -1.3496 22 6 -2.9644 -7.7599 -0.3524 23 6 0.5458 -3.2776 -2.4644 24 6 0.2384 -2.3326 -1.2903 25 1 -0.4851 0.8400 -0.0004 26 1 1.0218 -4.0791 0.8029 27 1 2.7116 -3.5149 0.7862 28 1 2.2569 -5.6119 -0.6092 29 1 3.0198 -4.2669 -1.4971 30 1 -0.6641 -6.2320 -0.1227 31 1 -1.7720 -5.3025 -1.1605 32 1 -1.2598 -8.2858 -1.6615 33 1 -3.4366 -6.2048 -2.4172 34 1 -2.8596 -7.6218 -3.3972 35 1 -2.6912 -8.5854 0.3048 36 1 -3.3168 -6.8839 0.1923 37 1 1.3396 -2.8545 -3.0799 38 1 -0.3516 -3.4190 -3.0667 39 1 -0.6646 -2.6639 -0.7777 40 1 0.0982 -1.3189 -1.6655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332413069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:42 Heat of formation + Delta-G solvation = -117.586005 kcal Electronic energy + Delta-G solvation = -26595.184213 eV Core-core repulsion = 22402.662387 eV Total energy + Delta-G solvation = -4192.521826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.07845 -47.40965 -38.64756 -37.67798 -37.03896 -35.82831 -33.88350 -31.17853 -30.23330 -30.23052 -26.65719 -26.48037 -23.64583 -23.16404 -22.94395 -20.52417 -19.96508 -18.64704 -17.80975 -17.74373 -16.90321 -16.70185 -16.52468 -16.10667 -15.90075 -14.99202 -14.84214 -14.28127 -14.16212 -13.93943 -13.76990 -13.72319 -13.68148 -13.46706 -13.32879 -13.02579 -12.93579 -12.23666 -12.19940 -12.07613 -11.99551 -11.76135 -11.45333 -11.40558 -11.19435 -10.89113 -10.82107 -10.78545 -10.62304 -10.44839 -10.29054 -10.01368 -9.77664 -8.81006 -8.54046 -6.77945 -5.91306 -3.35025 0.34050 2.78711 3.13487 3.30506 3.39490 3.41126 3.42081 3.79494 3.81852 3.89545 4.08460 4.26957 4.39800 4.59148 4.76982 4.99212 5.06011 5.09759 5.15529 5.25151 5.31450 5.34547 5.42857 5.49958 5.69373 5.79486 5.86648 5.97544 6.21932 6.26619 6.35523 6.54820 6.72320 6.83531 7.16656 7.45961 7.68810 8.30770 9.07132 9.69932 10.26083 11.16505 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.003422 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.869975 B = 8179.519736 C = 8861.357566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.130 3.870 11 C 0.104 3.896 12 N -0.988 5.988 13 S 2.606 3.394 14 O -0.962 6.962 15 O -0.956 6.956 16 C -0.624 4.624 17 C -0.099 4.099 18 C -0.169 4.169 19 C 0.254 3.746 20 F -0.179 7.179 21 F -0.189 7.189 22 C -0.150 4.150 23 C 0.095 3.905 24 C 0.156 3.844 25 H 0.255 0.745 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.022 0.978 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 -14.191 -1.928 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.311 5.311 10 C 0.002 3.998 11 C -0.023 4.023 12 N -0.827 5.827 13 S 2.699 3.301 14 O -0.952 6.952 15 O -0.946 6.946 16 C -0.752 4.752 17 C -0.119 4.119 18 C -0.207 4.207 19 C 0.218 3.782 20 F -0.160 7.160 21 F -0.169 7.169 22 C -0.188 4.188 23 C -0.032 4.032 24 C 0.028 3.972 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.040 0.960 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.039 -14.601 -2.650 15.671 hybrid contribution -0.178 1.036 0.679 1.251 sum -5.216 -13.565 -1.971 14.666 Atomic orbital electron populations 1.70008 1.05314 1.25654 1.53687 1.25041 0.95290 0.98527 1.00625 0.86216 0.79422 0.83750 0.77325 1.20208 1.21459 1.21720 1.19246 0.92905 0.84730 1.41576 0.91440 1.43907 1.36647 1.01402 1.49163 1.21310 0.98334 0.87502 0.92649 1.22056 0.88215 1.00265 0.91780 1.57416 1.43561 1.21925 1.59778 1.05054 0.75558 0.73571 0.75887 1.93566 1.55991 1.58418 1.87208 1.93572 1.80795 1.83932 1.36336 1.30706 1.19103 1.04768 1.20588 1.22053 0.95564 0.96864 0.97428 1.24379 0.94374 1.01780 1.00161 1.22016 0.78434 0.78280 0.99519 1.93024 1.95740 1.34402 1.92842 1.93021 1.37952 1.89830 1.96135 1.24123 0.93696 1.04424 0.96599 1.22444 0.99550 0.83129 0.98056 1.21297 0.88998 0.98932 0.87929 0.93528 0.96115 0.91495 0.90339 0.91194 0.84135 0.84234 0.86782 0.85860 0.87776 0.88259 0.86172 0.91409 0.90414 0.95981 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 11.20 55.49 0.62 -23.89 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 20.63 29.59 -169.99 -5.03 15.60 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.52 9.58 -15.06 -0.14 -6.66 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -13.43 2.97 -171.76 -0.51 -13.94 16 10 C 0.13 2.40 6.67 -3.60 -0.02 2.38 16 11 C 0.10 1.66 6.48 -3.60 -0.02 1.63 16 12 N -0.99 -15.76 3.19 -113.00 -0.36 -16.12 16 13 S 2.61 36.64 5.41 -107.50 -0.58 36.06 16 14 O -0.96 -15.53 16.70 -57.54 -0.96 -16.49 16 15 O -0.96 -15.53 16.69 -57.54 -0.96 -16.49 16 16 C -0.62 -6.40 6.01 37.15 0.22 -6.17 16 17 C -0.10 -0.93 3.63 -89.81 -0.33 -1.26 16 18 C -0.17 -1.59 7.42 -25.92 -0.19 -1.78 16 19 C 0.25 2.52 3.27 -25.92 -0.08 2.44 16 20 F -0.18 -1.98 17.38 2.25 0.04 -1.94 16 21 F -0.19 -2.13 17.41 2.25 0.04 -2.09 16 22 C -0.15 -1.23 7.43 -25.92 -0.19 -1.42 16 23 C 0.09 1.66 6.52 -3.36 -0.02 1.64 16 24 C 0.16 3.32 5.53 -3.36 -0.02 3.30 16 25 H 0.25 6.71 8.31 -40.82 -0.34 6.38 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16 28 H 0.08 1.07 7.06 -51.93 -0.37 0.70 16 29 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.14 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.14 1.32 7.84 -51.92 -0.41 0.91 16 32 H 0.11 1.00 8.13 -51.93 -0.42 0.57 16 33 H 0.12 1.05 7.90 -51.92 -0.41 0.64 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.12 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.22 7.05 -51.93 -0.37 0.85 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 2.41 5.99 -51.93 -0.31 2.10 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -31.53 342.51 -9.06 -40.59 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.62 Total: -0.56 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.89 Total: -5.90 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.25 Total: -53.95 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.92 Total: -32.98 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Atomic # 16 Polarization: 36.64 SS G_CDS: -0.58 Total: 36.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.53 -9.06 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332413069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.998 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds