Wall clock time and date at job start Fri Apr 10 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99552 * 2 1 4 4 C 1.52998 * 109.46759 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47283 * 64.99994 * 4 3 2 6 6 C 1.46500 * 119.99900 * 85.00024 * 5 4 3 7 7 C 1.50696 * 109.46944 * 84.99982 * 6 5 4 8 8 H 1.07999 * 120.00202 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99746 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99573 * 0.27650 * 9 7 6 11 11 Si 1.86800 * 119.99781 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46758 * 89.99934 * 11 9 7 13 13 H 1.48499 * 109.47026 * 209.99782 * 11 9 7 14 14 H 1.48496 * 109.47474 * 329.99818 * 11 9 7 15 15 S 1.65596 * 119.99923 * 265.00045 * 5 4 3 16 16 O 1.42105 * 106.40524 * 23.54009 * 15 5 4 17 17 O 1.42105 * 106.40130 * 156.46070 * 15 5 4 18 18 N 1.65600 * 107.21895 * 269.99725 * 15 5 4 19 19 C 1.47016 * 125.64819 * 269.69511 * 18 15 5 20 20 C 1.54317 * 107.27390 * 180.96731 * 19 18 15 21 21 H 1.09002 * 111.07984 * 264.03744 * 20 19 18 22 22 O 1.42903 * 110.59095 * 140.78581 * 20 19 18 23 23 C 1.55156 * 102.86594 * 22.52385 * 20 19 18 24 24 H 1.09008 * 111.03526 * 82.39110 * 23 20 19 25 25 O 1.42894 * 111.00772 * 206.22692 * 23 20 19 26 26 C 1.47426 * 125.64626 * 90.00289 * 18 15 5 27 27 H 1.08994 * 109.47248 * 300.00063 * 1 2 3 28 28 H 1.09004 * 109.47322 * 60.00358 * 1 2 3 29 29 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46780 * 60.00010 * 3 2 1 31 31 H 1.08997 * 109.46977 * 299.99810 * 3 2 1 32 32 H 1.09008 * 109.47115 * 305.00053 * 4 3 2 33 33 H 1.08997 * 109.46919 * 185.00207 * 4 3 2 34 34 H 1.09000 * 109.46609 * 325.00164 * 6 5 4 35 35 H 1.08999 * 109.46486 * 205.00243 * 6 5 4 36 36 H 0.97001 * 120.00651 * 359.71956 * 10 9 7 37 37 H 1.08999 * 109.88313 * 300.51031 * 19 18 15 38 38 H 1.09002 * 109.88349 * 61.68076 * 19 18 15 39 39 H 0.96697 * 113.99898 * 66.65263 * 22 20 19 40 40 H 0.96700 * 114.00255 * 173.65077 * 25 23 20 41 41 H 1.09005 * 110.36755 * 274.67536 * 26 18 15 42 42 H 1.08997 * 110.36880 * 36.99197 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1808 1.3891 -2.4461 7 6 5.5681 1.9771 -2.4180 8 1 6.2305 1.7587 -1.5934 9 6 5.9913 2.7947 -3.4444 10 7 5.1823 3.0657 -4.4453 11 14 7.7106 3.5241 -3.4092 12 1 8.6542 2.6002 -4.0884 13 1 7.7076 4.8327 -4.1110 14 1 8.1368 3.7191 -2.0001 15 16 4.2414 -1.0686 -1.3191 16 8 3.4686 -1.6438 -0.2743 17 8 4.1044 -1.4424 -2.6833 18 7 5.8286 -1.3236 -0.9216 19 6 6.9529 -1.3656 -1.8680 20 6 8.2298 -1.6522 -1.0502 21 1 8.7543 -0.7285 -0.8057 22 8 9.0897 -2.5474 -1.7583 23 6 7.6745 -2.3244 0.2332 24 1 7.4877 -3.3858 0.0695 25 8 8.5588 -2.1272 1.3383 26 6 6.3474 -1.5524 0.4393 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0890 34 1 3.4455 2.1936 -2.4626 35 1 4.0653 0.7728 -3.3377 36 1 4.2893 2.6872 -4.4634 37 1 6.7928 -2.1583 -2.5988 38 1 7.0472 -0.4050 -2.3744 39 1 9.4634 -2.1752 -2.5688 40 1 8.2100 -2.4444 2.1826 41 1 6.5351 -0.6018 0.9386 42 1 5.6449 -2.1530 1.0171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337154987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:08 Heat of formation + Delta-G solvation = -208.082608 kcal Electronic energy + Delta-G solvation = -28081.544474 eV Core-core repulsion = 23996.185936 eV Total energy + Delta-G solvation = -4085.358538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.19357 -37.83713 -36.62506 -36.08411 -35.59646 -35.27259 -35.17741 -32.84807 -29.46587 -28.95947 -28.15389 -26.46188 -25.71433 -23.11310 -22.64398 -21.70097 -21.05415 -18.64152 -18.07711 -17.54711 -17.19020 -16.77116 -16.47905 -16.24414 -15.69126 -15.49596 -14.89481 -14.68192 -14.48210 -14.18716 -13.81172 -13.70587 -13.55518 -12.90405 -12.73388 -12.67630 -12.35700 -12.17455 -12.09015 -11.91530 -11.74082 -11.62251 -11.45879 -11.40177 -11.08136 -10.94692 -10.63842 -10.50478 -10.46254 -10.24637 -10.22421 -10.05653 -9.47917 -9.39037 -8.74261 -8.50839 -8.01022 -6.50780 -4.25881 1.16569 3.31509 3.34471 3.36482 3.50652 3.83162 4.03502 4.08644 4.33165 4.36992 4.40077 4.88550 5.04630 5.09030 5.22943 5.30440 5.31681 5.34924 5.41432 5.44849 5.53573 5.57429 5.59626 5.76501 5.81914 5.86221 6.01003 6.06254 6.14492 6.26299 6.37764 6.58572 6.96628 7.17244 7.37841 7.48664 7.50204 7.61488 7.89740 8.30973 8.66622 9.46147 10.86303 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.008706 B = 0.007520 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.274577 B = 3722.321285 C = 6004.932029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.038 3.962 4 C 0.138 3.862 5 N -0.982 5.982 6 C 0.235 3.765 7 C -0.620 4.620 8 H 0.058 0.942 9 C 0.023 3.977 10 N -0.905 5.905 11 Si 1.067 2.933 12 H -0.286 1.286 13 H -0.283 1.283 14 H -0.288 1.288 15 S 2.800 3.200 16 O -0.968 6.968 17 O -0.977 6.977 18 N -1.010 6.010 19 C 0.090 3.910 20 C 0.104 3.896 21 H 0.084 0.916 22 O -0.559 6.559 23 C 0.102 3.898 24 H 0.081 0.919 25 O -0.554 6.554 26 C 0.090 3.910 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.271 0.729 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.385 0.615 40 H 0.381 0.619 41 H 0.075 0.925 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 -6.264 10.852 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.041 4.041 4 C 0.011 3.989 5 N -0.822 5.822 6 C 0.112 3.888 7 C -0.659 4.659 8 H 0.076 0.924 9 C -0.183 4.183 10 N -0.540 5.540 11 Si 0.895 3.105 12 H -0.213 1.213 13 H -0.209 1.209 14 H -0.214 1.214 15 S 2.809 3.191 16 O -0.952 6.952 17 O -0.961 6.961 18 N -0.850 5.850 19 C -0.036 4.036 20 C 0.044 3.956 21 H 0.102 0.898 22 O -0.364 6.364 23 C 0.041 3.959 24 H 0.099 0.901 25 O -0.359 6.359 26 C -0.037 4.037 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.233 0.767 40 H 0.228 0.772 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.977 -6.233 9.773 11.633 hybrid contribution -1.307 -0.071 0.868 1.571 sum -0.331 -6.304 10.641 12.373 Atomic orbital electron populations 1.22704 0.82256 1.02338 0.99347 1.88138 1.18565 1.26967 1.95221 1.23116 0.95390 0.85373 1.00200 1.21071 0.91347 1.00508 0.85954 1.57612 1.80207 1.26688 1.17713 1.19246 0.97317 0.90618 0.81610 1.22374 0.99520 1.33986 1.10017 0.92406 1.25776 1.05146 0.94962 0.92399 1.70755 1.08881 1.42920 1.31417 0.83567 0.74363 0.76955 0.75601 1.21262 1.20866 1.21398 1.01475 0.71400 0.73176 0.73014 1.93595 1.66545 1.76563 1.58500 1.93560 1.85189 1.82269 1.35127 1.59036 1.24950 1.87765 1.13251 1.22447 0.84965 1.04002 0.92167 1.22755 0.89905 0.92818 0.90143 0.89782 1.86466 1.65296 1.42959 1.41691 1.22902 0.87932 0.98911 0.86154 0.90076 1.86526 1.44863 1.85852 1.18668 1.22593 0.95550 1.00590 0.84917 0.94568 0.94513 0.89994 0.92944 0.92814 0.90867 0.88629 0.95638 0.94222 0.91878 0.90510 0.88804 0.76733 0.77190 0.90680 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.54 8.76 -54.45 -0.48 -7.01 16 3 C 0.04 0.60 6.28 37.16 0.23 0.83 16 4 C 0.14 2.36 5.82 -4.04 -0.02 2.34 16 5 N -0.98 -20.14 2.77 -115.66 -0.32 -20.46 16 6 C 0.23 5.64 4.75 -5.20 -0.02 5.62 16 7 C -0.62 -15.67 8.96 -34.44 -0.31 -15.98 16 8 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 9 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 10 N -0.90 -25.87 13.65 55.43 0.76 -25.11 16 11 Si 1.07 23.41 29.90 -169.99 -5.08 18.33 16 12 H -0.29 -6.01 7.11 56.52 0.40 -5.60 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 15 S 2.80 57.43 6.27 -107.50 -0.67 56.76 16 16 O -0.97 -20.12 14.61 -65.29 -0.95 -21.07 16 17 O -0.98 -23.43 16.27 -57.17 -0.93 -24.36 16 18 N -1.01 -17.51 3.76 -111.43 -0.42 -17.93 16 19 C 0.09 1.51 6.75 -3.07 -0.02 1.48 16 20 C 0.10 1.49 4.07 -24.90 -0.10 1.39 16 21 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 22 O -0.56 -7.49 13.38 -35.23 -0.47 -7.96 16 23 C 0.10 1.33 4.15 -24.58 -0.10 1.23 16 24 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 25 O -0.55 -6.57 13.47 -35.23 -0.47 -7.05 16 26 C 0.09 1.24 6.84 -2.53 -0.02 1.23 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.07 1.14 7.61 -51.92 -0.40 0.74 16 33 H 0.10 1.56 8.11 -51.93 -0.42 1.14 16 34 H 0.03 0.63 7.91 -51.93 -0.41 0.22 16 35 H 0.04 1.06 6.79 -51.93 -0.35 0.70 16 36 H 0.27 7.76 7.22 -40.82 -0.29 7.46 16 37 H 0.08 1.27 8.06 -51.93 -0.42 0.86 16 38 H 0.09 1.72 7.72 -51.93 -0.40 1.32 16 39 H 0.38 3.59 9.12 45.56 0.42 4.01 16 40 H 0.38 2.63 9.11 45.56 0.42 3.04 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.08 7.78 -51.93 -0.40 0.67 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -35.10 360.56 -7.81 -42.91 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.85 Total: 7.36 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 0.65 Total: 0.17 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.02 Total: -63.51 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -3.31 Total: -67.45 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.08 Total: 18.33 kcal Atomic # 16 Polarization: 57.43 SS G_CDS: -0.67 Total: 56.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.10 -7.81 -42.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337154987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.170 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds