Wall clock time and date at job start Fri Apr 10 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99552 * 2 1 4 4 C 1.52998 * 109.46759 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47283 * 64.99994 * 4 3 2 6 6 C 1.46500 * 119.99900 * 85.00024 * 5 4 3 7 7 C 1.50696 * 109.46944 * 84.99982 * 6 5 4 8 8 H 1.07999 * 120.00202 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99746 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99573 * 0.27650 * 9 7 6 11 11 Si 1.86800 * 119.99781 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46758 * 89.99934 * 11 9 7 13 13 H 1.48499 * 109.47026 * 209.99782 * 11 9 7 14 14 H 1.48496 * 109.47474 * 329.99818 * 11 9 7 15 15 S 1.65596 * 119.99923 * 265.00045 * 5 4 3 16 16 O 1.42105 * 106.40524 * 23.54009 * 15 5 4 17 17 O 1.42105 * 106.40130 * 156.46070 * 15 5 4 18 18 N 1.65600 * 107.21895 * 269.99725 * 15 5 4 19 19 C 1.47016 * 125.64819 * 269.69511 * 18 15 5 20 20 C 1.54317 * 107.27390 * 180.96731 * 19 18 15 21 21 H 1.09002 * 111.07984 * 264.03744 * 20 19 18 22 22 O 1.42903 * 110.59095 * 140.78581 * 20 19 18 23 23 C 1.55156 * 102.86594 * 22.52385 * 20 19 18 24 24 H 1.09008 * 111.03526 * 82.39110 * 23 20 19 25 25 O 1.42894 * 111.00772 * 206.22692 * 23 20 19 26 26 C 1.47426 * 125.64626 * 90.00289 * 18 15 5 27 27 H 1.08994 * 109.47248 * 300.00063 * 1 2 3 28 28 H 1.09004 * 109.47322 * 60.00358 * 1 2 3 29 29 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46780 * 60.00010 * 3 2 1 31 31 H 1.08997 * 109.46977 * 299.99810 * 3 2 1 32 32 H 1.09008 * 109.47115 * 305.00053 * 4 3 2 33 33 H 1.08997 * 109.46919 * 185.00207 * 4 3 2 34 34 H 1.09000 * 109.46609 * 325.00164 * 6 5 4 35 35 H 1.08999 * 109.46486 * 205.00243 * 6 5 4 36 36 H 0.97001 * 120.00651 * 359.71956 * 10 9 7 37 37 H 1.08999 * 109.88313 * 300.51031 * 19 18 15 38 38 H 1.09002 * 109.88349 * 61.68076 * 19 18 15 39 39 H 0.96697 * 113.99898 * 66.65263 * 22 20 19 40 40 H 0.96700 * 114.00255 * 173.65077 * 25 23 20 41 41 H 1.09005 * 110.36755 * 274.67536 * 26 18 15 42 42 H 1.08997 * 110.36880 * 36.99197 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1808 1.3891 -2.4461 7 6 5.5681 1.9771 -2.4180 8 1 6.2305 1.7587 -1.5934 9 6 5.9913 2.7947 -3.4444 10 7 5.1823 3.0657 -4.4453 11 14 7.7106 3.5241 -3.4092 12 1 8.6542 2.6002 -4.0884 13 1 7.7076 4.8327 -4.1110 14 1 8.1368 3.7191 -2.0001 15 16 4.2414 -1.0686 -1.3191 16 8 3.4686 -1.6438 -0.2743 17 8 4.1044 -1.4424 -2.6833 18 7 5.8286 -1.3236 -0.9216 19 6 6.9529 -1.3656 -1.8680 20 6 8.2298 -1.6522 -1.0502 21 1 8.7543 -0.7285 -0.8057 22 8 9.0897 -2.5474 -1.7583 23 6 7.6745 -2.3244 0.2332 24 1 7.4877 -3.3858 0.0695 25 8 8.5588 -2.1272 1.3383 26 6 6.3474 -1.5524 0.4393 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0890 34 1 3.4455 2.1936 -2.4626 35 1 4.0653 0.7728 -3.3377 36 1 4.2893 2.6872 -4.4634 37 1 6.7928 -2.1583 -2.5988 38 1 7.0472 -0.4050 -2.3744 39 1 9.4634 -2.1752 -2.5688 40 1 8.2100 -2.4444 2.1826 41 1 6.5351 -0.6018 0.9386 42 1 5.6449 -2.1530 1.0171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337154987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:08 Heat of formation + Delta-G solvation = -240.156048 kcal Electronic energy + Delta-G solvation = -28082.935283 eV Core-core repulsion = 23996.185936 eV Total energy + Delta-G solvation = -4086.749347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31438 -39.14248 -38.32908 -37.21383 -37.07105 -36.89342 -36.41513 -34.76311 -30.95270 -30.14648 -29.34080 -28.11322 -27.03476 -24.95260 -23.87390 -23.17459 -22.15546 -20.18294 -19.27696 -18.98017 -18.87035 -18.36338 -17.66596 -17.56562 -17.07416 -16.75381 -16.21287 -15.92260 -15.76607 -15.70290 -15.55918 -15.03223 -14.64054 -14.55393 -14.12380 -13.98150 -13.63717 -13.57610 -13.53296 -13.35280 -13.22234 -13.11200 -13.07215 -13.02131 -12.74600 -12.43266 -12.34496 -11.95796 -11.89604 -11.56090 -11.33441 -11.24637 -11.10909 -10.59816 -10.54972 -10.10120 -9.75984 -8.61517 -6.37781 -0.43073 1.56300 1.63518 1.79674 1.86520 2.48652 2.58365 2.89268 2.92170 3.10928 3.17837 3.19231 3.64444 3.87127 3.93960 4.01740 4.11668 4.17625 4.19087 4.36128 4.42740 4.47468 4.49904 4.53425 4.72915 4.74376 4.78109 4.82252 4.83630 4.91434 4.95123 5.00070 5.21609 5.36009 5.76523 5.87296 6.24710 6.29948 6.52848 6.74102 6.82504 7.43063 8.74531 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.008706 B = 0.007520 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.274577 B = 3722.321285 C = 6004.932029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.038 3.962 4 C 0.129 3.871 5 N -0.986 5.986 6 C 0.249 3.751 7 C -0.611 4.611 8 H 0.067 0.933 9 C -0.028 4.028 10 N -0.936 5.936 11 Si 1.111 2.889 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.264 1.264 15 S 2.811 3.189 16 O -0.971 6.971 17 O -1.020 7.020 18 N -1.012 6.012 19 C 0.089 3.911 20 C 0.110 3.890 21 H 0.088 0.912 22 O -0.565 6.565 23 C 0.112 3.888 24 H 0.086 0.914 25 O -0.561 6.561 26 C 0.086 3.914 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.016 0.984 35 H 0.006 0.994 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.403 0.597 41 H 0.087 0.913 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -6.360 13.319 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C -0.041 4.041 4 C 0.003 3.997 5 N -0.826 5.826 6 C 0.125 3.875 7 C -0.650 4.650 8 H 0.085 0.915 9 C -0.227 4.227 10 N -0.573 5.573 11 Si 0.932 3.068 12 H -0.197 1.197 13 H -0.215 1.215 14 H -0.189 1.189 15 S 2.821 3.179 16 O -0.955 6.955 17 O -1.005 7.005 18 N -0.854 5.854 19 C -0.037 4.037 20 C 0.049 3.951 21 H 0.106 0.894 22 O -0.373 6.373 23 C 0.051 3.949 24 H 0.104 0.896 25 O -0.369 6.369 26 C -0.040 4.040 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.033 0.967 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.254 0.746 41 H 0.105 0.895 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.293 -6.351 12.289 14.022 hybrid contribution -1.762 -0.107 0.175 1.773 sum 0.532 -6.457 12.464 14.048 Atomic orbital electron populations 1.22914 0.80369 1.03321 1.00742 1.88074 1.20815 1.27908 1.95489 1.23141 0.94463 0.85165 1.01296 1.21381 0.92516 1.01029 0.84772 1.57520 1.80840 1.26333 1.17879 1.18826 0.96748 0.89918 0.82015 1.22603 0.99856 1.32814 1.09741 0.91518 1.27191 1.08069 0.95430 0.91975 1.70885 1.08772 1.44606 1.33025 0.83025 0.70637 0.76134 0.76976 1.19700 1.21511 1.18875 1.00911 0.72014 0.73029 0.71989 1.93579 1.67293 1.76552 1.58059 1.93500 1.86223 1.83016 1.37750 1.58752 1.24077 1.87385 1.15200 1.22477 0.86149 1.02601 0.92517 1.22660 0.88641 0.93425 0.90357 0.89379 1.86441 1.64942 1.43202 1.42714 1.22717 0.87267 0.98743 0.86172 0.89638 1.86486 1.44707 1.86109 1.19593 1.22878 0.96307 1.01735 0.83034 0.91908 0.94341 0.89337 0.89285 0.94174 0.88959 0.87924 0.96652 0.97640 0.93477 0.91160 0.91026 0.74860 0.74575 0.89512 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -13.81 8.76 -130.61 -1.14 -14.95 16 3 C 0.04 1.14 6.28 71.98 0.45 1.60 16 4 C 0.13 4.23 5.82 86.38 0.50 4.73 16 5 N -0.99 -40.56 2.77 -519.84 -1.44 -42.00 16 6 C 0.25 12.33 4.75 85.63 0.41 12.73 16 7 C -0.61 -31.02 8.96 25.60 0.23 -30.79 16 8 H 0.07 3.22 7.81 -2.91 -0.02 3.19 16 9 C -0.03 -1.47 5.46 84.66 0.46 -1.01 16 10 N -0.94 -54.88 13.65 21.45 0.29 -54.59 16 11 Si 1.11 46.28 29.90 68.60 2.05 48.33 16 12 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 13 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 15 S 2.81 115.70 6.27 -56.49 -0.35 115.35 16 16 O -0.97 -39.60 14.61 -120.24 -1.76 -41.35 16 17 O -1.02 -50.67 16.27 -128.00 -2.08 -52.76 16 18 N -1.01 -34.21 3.76 -506.45 -1.90 -36.11 16 19 C 0.09 2.92 6.75 86.73 0.59 3.51 16 20 C 0.11 2.93 4.07 31.78 0.13 3.06 16 21 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 22 O -0.57 -14.02 13.38 -148.98 -1.99 -16.02 16 23 C 0.11 2.63 4.15 31.98 0.13 2.76 16 24 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 25 O -0.56 -11.35 13.47 -148.98 -2.01 -13.36 16 26 C 0.09 2.16 6.84 86.85 0.59 2.75 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 32 H 0.09 2.67 7.61 -2.38 -0.02 2.65 16 33 H 0.10 3.19 8.11 -2.39 -0.02 3.18 16 34 H 0.02 0.79 7.91 -2.39 -0.02 0.77 16 35 H 0.01 0.32 6.79 -2.39 -0.02 0.30 16 36 H 0.26 15.34 7.22 -92.71 -0.67 14.67 16 37 H 0.07 2.36 8.06 -2.39 -0.02 2.34 16 38 H 0.07 2.65 7.72 -2.39 -0.02 2.63 16 39 H 0.40 6.78 9.12 -74.06 -0.68 6.10 16 40 H 0.40 4.04 9.11 -74.06 -0.67 3.37 16 41 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.10 2.24 7.78 -2.39 -0.02 2.22 16 Total: -1.00 -76.08 360.56 -5.80 -81.88 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.21 Total: 24.41 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 4.74 Total: 1.17 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -3.05 Total: -132.70 kcal Atomic # 8 Polarization: -129.46 SS G_CDS: -8.98 Total: -138.44 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.05 Total: 48.33 kcal Atomic # 16 Polarization: 115.70 SS G_CDS: -0.35 Total: 115.35 kcal Total: -76.08 -5.80 -81.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337154987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.276 kcal (2) G-P(sol) polarization free energy of solvation -76.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds