Wall clock time and date at job start Fri Apr 10 2020 18:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47293 * 2 1 4 4 C 1.46501 * 119.99556 * 293.35575 * 3 2 1 5 5 C 1.50701 * 109.47099 * 274.99602 * 4 3 2 6 6 H 1.08007 * 119.99650 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99962 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47091 * 89.99870 * 9 7 5 11 11 H 1.48501 * 109.46875 * 209.99732 * 9 7 5 12 12 H 1.48498 * 109.46790 * 329.99522 * 9 7 5 13 13 S 1.65595 * 120.00304 * 113.35089 * 3 2 1 14 14 O 1.42099 * 106.40263 * 149.76233 * 13 3 2 15 15 O 1.42107 * 106.40199 * 16.84602 * 13 3 2 16 16 N 1.65596 * 107.22140 * 263.30479 * 13 3 2 17 17 C 1.46510 * 119.99810 * 65.48056 * 16 13 3 18 18 C 1.52995 * 109.46809 * 163.13326 * 17 16 13 19 19 S 1.81404 * 115.55178 * 279.65948 * 18 17 16 20 20 C 1.81401 * 103.00076 * 300.43768 * 19 18 17 21 21 O 1.42100 * 109.46867 * 184.04682 * 19 18 17 22 22 C 1.53004 * 117.49819 * 133.95365 * 18 17 16 23 23 C 1.52999 * 117.50123 * 65.32976 * 18 17 16 24 24 H 1.09002 * 109.47125 * 305.10878 * 1 2 3 25 25 H 1.08995 * 109.46909 * 65.10694 * 1 2 3 26 26 H 1.08997 * 109.47276 * 185.10905 * 1 2 3 27 27 H 1.09004 * 109.47268 * 240.00230 * 2 1 3 28 28 H 1.09000 * 109.47197 * 120.00025 * 2 1 3 29 29 H 1.08995 * 109.47587 * 34.99765 * 4 3 2 30 30 H 1.08994 * 109.47146 * 155.00232 * 4 3 2 31 31 H 0.96995 * 120.00205 * 180.02562 * 8 7 5 32 32 H 0.96997 * 120.00056 * 245.76026 * 16 13 3 33 33 H 1.08996 * 109.46835 * 283.13443 * 17 16 13 34 34 H 1.09000 * 109.46664 * 43.13549 * 17 16 13 35 35 H 1.08999 * 109.46792 * 65.52638 * 20 19 18 36 36 H 1.08991 * 109.46989 * 185.53455 * 20 19 18 37 37 H 1.08998 * 109.46738 * 305.52969 * 20 19 18 38 38 H 1.08992 * 117.49660 * 359.97438 * 22 18 17 39 39 H 1.08998 * 117.49681 * 145.01850 * 22 18 17 40 40 H 1.09003 * 117.50243 * 214.97501 * 23 18 17 41 41 H 1.09002 * 117.49741 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7883 2.2394 -1.1648 5 6 2.8757 2.0077 -2.1821 6 1 3.6595 1.2923 -1.9812 7 6 2.8700 2.7088 -3.3693 8 7 1.9153 3.5795 -3.6142 9 14 4.2175 2.4209 -4.6306 10 1 3.8050 1.3360 -5.5568 11 1 4.4485 3.6688 -5.4017 12 1 5.4702 2.0292 -3.9359 13 16 2.8303 1.9724 1.3166 14 8 3.7412 2.9450 0.8229 15 8 3.2362 0.8433 2.0780 16 7 1.7297 2.7910 2.2444 17 6 0.6308 2.0663 2.8876 18 6 0.0255 2.9341 3.9927 19 16 0.9336 2.9473 5.5631 20 6 0.9243 1.2011 6.0545 21 8 0.2139 3.7125 6.5200 22 6 -1.4999 3.0332 4.0575 23 6 -0.6757 4.2271 3.5714 24 1 -0.3633 0.5910 0.8407 25 1 -0.3633 0.4326 -0.9322 26 1 -0.3634 -1.0235 0.0915 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8208 2.0010 -1.6065 30 1 1.7983 3.2841 -0.8541 31 1 1.9110 4.0725 -4.4495 32 1 1.8102 3.7509 2.3587 33 1 -0.1346 1.8350 2.1469 34 1 1.0101 1.1402 3.3196 35 1 1.5050 0.6192 5.3388 36 1 1.3642 1.1006 7.0466 37 1 -0.1020 0.8345 6.0732 38 1 -2.0721 2.4804 3.3125 39 1 -1.9581 3.1061 5.0438 40 1 -0.5917 5.0855 4.2380 41 1 -0.7061 4.4592 2.5068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337200827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:12 Heat of formation + Delta-G solvation = -84.540446 kcal Electronic energy + Delta-G solvation = -24701.211631 eV Core-core repulsion = 21063.963154 eV Total energy + Delta-G solvation = -3637.248477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.18282 -36.65922 -36.10335 -35.96203 -35.20039 -33.90194 -32.65569 -29.94030 -29.18850 -26.73505 -26.52936 -23.27914 -22.78262 -21.72702 -21.39978 -18.86048 -17.80918 -17.33023 -16.84161 -16.64948 -16.19065 -15.82138 -15.25969 -14.90559 -14.79253 -14.33593 -14.14217 -13.78570 -13.44123 -13.40527 -13.20533 -12.91641 -12.67163 -12.19916 -12.09921 -11.91552 -11.77231 -11.74355 -11.66386 -11.46399 -11.36022 -11.03506 -10.96724 -10.84691 -10.77443 -10.58641 -10.38428 -10.25741 -9.98826 -9.75866 -9.36251 -8.45203 -8.38109 -8.10040 -6.07359 -4.10573 1.18900 1.30336 2.34217 3.19905 3.31116 3.37884 3.43670 3.51168 3.58813 4.09912 4.37367 4.44423 4.49352 4.62468 4.92417 4.98981 5.07913 5.19804 5.27621 5.30385 5.35180 5.40650 5.52652 5.61857 5.70313 5.74043 5.78257 5.83416 5.90618 6.03220 6.29920 6.57841 6.61606 7.10322 7.24656 7.40936 7.60391 7.90637 8.20075 8.91822 9.54660 11.01233 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.003743 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.962008 B = 7478.821998 C = 7575.611708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 S 2.778 3.222 14 O -0.960 6.960 15 O -0.998 6.998 16 N -1.132 6.132 17 C 0.181 3.819 18 C -0.462 4.462 19 S 1.279 4.721 20 C -0.490 4.490 21 O -0.852 6.852 22 C -0.148 4.148 23 C -0.122 4.122 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -3.877 14.926 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.834 5.834 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.786 3.214 14 O -0.944 6.944 15 O -0.981 6.981 16 N -0.891 5.891 17 C 0.053 3.947 18 C -0.560 4.560 19 S 1.477 4.523 20 C -0.647 4.647 21 O -0.848 6.848 22 C -0.187 4.187 23 C -0.161 4.161 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.755 -3.291 15.446 16.233 hybrid contribution -1.863 -0.476 -0.721 2.053 sum -5.618 -3.767 14.725 16.204 Atomic orbital electron populations 1.22221 0.97006 1.01047 1.02512 1.21139 0.93645 0.83141 1.03066 1.57721 1.74595 1.19797 1.31279 1.18990 0.97509 0.88207 0.81588 1.21487 1.10371 1.23249 1.01389 0.92151 1.24916 0.96030 0.94866 0.98203 1.69909 1.32827 1.25717 1.25211 0.86529 0.82418 0.77574 0.81135 1.20716 1.21125 1.19661 1.02032 0.73517 0.73193 0.72627 1.93661 1.59801 1.61554 1.79346 1.93517 1.80898 1.52397 1.71322 1.56280 1.44912 1.20771 1.67120 1.20387 0.89328 0.92952 0.92038 1.29372 1.03519 1.07720 1.15415 1.70749 1.12610 0.84600 0.84360 1.27620 1.07229 1.20570 1.09327 1.93060 1.75487 1.60683 1.55567 1.22965 0.89674 1.02511 1.03538 1.22797 0.99884 0.90151 1.03251 0.93188 0.91643 0.92465 0.90601 0.90257 0.94593 0.94749 0.92750 0.75106 0.91059 0.89804 0.86113 0.87707 0.89755 0.87743 0.88373 0.87932 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.91 37.16 0.37 -1.85 16 2 C 0.12 1.84 6.58 -4.04 -0.03 1.81 16 3 N -0.99 -18.62 2.92 -115.66 -0.34 -18.96 16 4 C 0.26 6.05 4.99 -5.19 -0.03 6.02 16 5 C -0.53 -14.17 9.38 -34.44 -0.32 -14.50 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 S 2.78 48.50 6.07 -107.50 -0.65 47.84 16 14 O -0.96 -21.05 17.36 -57.17 -0.99 -22.04 16 15 O -1.00 -17.68 15.93 -57.17 -0.91 -18.59 16 16 N -1.13 -14.01 6.03 -10.61 -0.06 -14.07 16 17 C 0.18 1.85 6.17 -4.04 -0.02 1.82 16 18 C -0.46 -4.34 2.07 -90.62 -0.19 -4.52 16 19 S 1.28 11.80 13.82 -107.50 -1.49 10.31 16 20 C -0.49 -3.92 10.35 101.05 1.05 -2.88 16 21 O -0.85 -12.30 17.82 -35.23 -0.63 -12.92 16 22 C -0.15 -1.39 9.81 -26.73 -0.26 -1.65 16 23 C -0.12 -1.16 9.71 -26.73 -0.26 -1.42 16 24 H 0.05 0.58 5.95 -51.93 -0.31 0.27 16 25 H 0.06 0.97 7.13 -51.93 -0.37 0.60 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.13 6.69 -51.93 -0.35 0.78 16 29 H 0.04 0.86 6.91 -51.93 -0.36 0.50 16 30 H 0.03 0.85 7.79 -51.93 -0.40 0.45 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.42 4.44 8.47 -34.47 -0.29 4.15 16 33 H 0.07 0.72 5.75 -51.93 -0.30 0.42 16 34 H 0.08 0.77 6.48 -51.93 -0.34 0.43 16 35 H 0.12 0.83 7.32 -51.92 -0.38 0.45 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.10 1.00 8.06 -51.93 -0.42 0.58 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -35.84 362.13 -9.71 -45.55 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.02 Total: 1.33 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 0.21 Total: -15.55 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.33 Total: -57.74 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -2.53 Total: -53.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 60.29 SS G_CDS: -2.14 Total: 58.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.84 -9.71 -45.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337200827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.993 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds