Wall clock time and date at job start Fri Apr 10 2020 18:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47293 * 2 1 4 4 C 1.46501 * 119.99556 * 293.35575 * 3 2 1 5 5 C 1.50701 * 109.47099 * 274.99602 * 4 3 2 6 6 H 1.08007 * 119.99650 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99962 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47091 * 89.99870 * 9 7 5 11 11 H 1.48501 * 109.46875 * 209.99732 * 9 7 5 12 12 H 1.48498 * 109.46790 * 329.99522 * 9 7 5 13 13 S 1.65595 * 120.00304 * 113.35089 * 3 2 1 14 14 O 1.42099 * 106.40263 * 149.76233 * 13 3 2 15 15 O 1.42107 * 106.40199 * 16.84602 * 13 3 2 16 16 N 1.65596 * 107.22140 * 263.30479 * 13 3 2 17 17 C 1.46510 * 119.99810 * 65.48056 * 16 13 3 18 18 C 1.52995 * 109.46809 * 163.13326 * 17 16 13 19 19 S 1.81404 * 115.55178 * 279.65948 * 18 17 16 20 20 C 1.81401 * 103.00076 * 300.43768 * 19 18 17 21 21 O 1.42100 * 109.46867 * 184.04682 * 19 18 17 22 22 C 1.53004 * 117.49819 * 133.95365 * 18 17 16 23 23 C 1.52999 * 117.50123 * 65.32976 * 18 17 16 24 24 H 1.09002 * 109.47125 * 305.10878 * 1 2 3 25 25 H 1.08995 * 109.46909 * 65.10694 * 1 2 3 26 26 H 1.08997 * 109.47276 * 185.10905 * 1 2 3 27 27 H 1.09004 * 109.47268 * 240.00230 * 2 1 3 28 28 H 1.09000 * 109.47197 * 120.00025 * 2 1 3 29 29 H 1.08995 * 109.47587 * 34.99765 * 4 3 2 30 30 H 1.08994 * 109.47146 * 155.00232 * 4 3 2 31 31 H 0.96995 * 120.00205 * 180.02562 * 8 7 5 32 32 H 0.96997 * 120.00056 * 245.76026 * 16 13 3 33 33 H 1.08996 * 109.46835 * 283.13443 * 17 16 13 34 34 H 1.09000 * 109.46664 * 43.13549 * 17 16 13 35 35 H 1.08999 * 109.46792 * 65.52638 * 20 19 18 36 36 H 1.08991 * 109.46989 * 185.53455 * 20 19 18 37 37 H 1.08998 * 109.46738 * 305.52969 * 20 19 18 38 38 H 1.08992 * 117.49660 * 359.97438 * 22 18 17 39 39 H 1.08998 * 117.49681 * 145.01850 * 22 18 17 40 40 H 1.09003 * 117.50243 * 214.97501 * 23 18 17 41 41 H 1.09002 * 117.49741 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7883 2.2394 -1.1648 5 6 2.8757 2.0077 -2.1821 6 1 3.6595 1.2923 -1.9812 7 6 2.8700 2.7088 -3.3693 8 7 1.9153 3.5795 -3.6142 9 14 4.2175 2.4209 -4.6306 10 1 3.8050 1.3360 -5.5568 11 1 4.4485 3.6688 -5.4017 12 1 5.4702 2.0292 -3.9359 13 16 2.8303 1.9724 1.3166 14 8 3.7412 2.9450 0.8229 15 8 3.2362 0.8433 2.0780 16 7 1.7297 2.7910 2.2444 17 6 0.6308 2.0663 2.8876 18 6 0.0255 2.9341 3.9927 19 16 0.9336 2.9473 5.5631 20 6 0.9243 1.2011 6.0545 21 8 0.2139 3.7125 6.5200 22 6 -1.4999 3.0332 4.0575 23 6 -0.6757 4.2271 3.5714 24 1 -0.3633 0.5910 0.8407 25 1 -0.3633 0.4326 -0.9322 26 1 -0.3634 -1.0235 0.0915 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8208 2.0010 -1.6065 30 1 1.7983 3.2841 -0.8541 31 1 1.9110 4.0725 -4.4495 32 1 1.8102 3.7509 2.3587 33 1 -0.1346 1.8350 2.1469 34 1 1.0101 1.1402 3.3196 35 1 1.5050 0.6192 5.3388 36 1 1.3642 1.1006 7.0466 37 1 -0.1020 0.8345 6.0732 38 1 -2.0721 2.4804 3.3125 39 1 -1.9581 3.1061 5.0438 40 1 -0.5917 5.0855 4.2380 41 1 -0.7061 4.4592 2.5068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337200827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:12 Heat of formation + Delta-G solvation = -112.992819 kcal Electronic energy + Delta-G solvation = -24702.445419 eV Core-core repulsion = 21063.963154 eV Total energy + Delta-G solvation = -3638.482264 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.01823 -38.12536 -37.61345 -36.91362 -36.71245 -34.91436 -34.62218 -31.36766 -29.85858 -28.52375 -27.43993 -25.00826 -23.55526 -23.00804 -22.34804 -20.15415 -19.02294 -18.60557 -18.28798 -17.95855 -17.55479 -17.04982 -16.58459 -16.10289 -15.79776 -15.63644 -15.05320 -14.94177 -14.77391 -14.55806 -14.19763 -14.08943 -13.65168 -13.58836 -13.45643 -13.25939 -13.15554 -12.99412 -12.90902 -12.68166 -12.62295 -12.57830 -12.51819 -12.18339 -12.09618 -11.79543 -11.69931 -11.66758 -11.48447 -11.10708 -10.53168 -10.36689 -9.71101 -9.16599 -8.14832 -6.24617 -0.19703 0.55352 1.41938 1.44510 1.54628 1.61381 2.09585 2.44555 2.55815 2.72099 2.82610 3.16840 3.49409 3.67777 3.70681 3.85925 4.06753 4.28974 4.36671 4.46255 4.50695 4.56075 4.60599 4.63102 4.65878 4.85024 4.88226 4.93904 5.09247 5.11652 5.17501 5.25577 5.30235 5.50118 5.65143 5.79619 5.98612 6.18132 6.27928 6.84006 7.43777 8.92248 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.003743 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.962008 B = 7478.821998 C = 7575.611708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.108 3.892 3 N -0.998 5.998 4 C 0.275 3.725 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.274 1.274 13 S 2.796 3.204 14 O -1.009 7.009 15 O -0.998 6.998 16 N -1.117 6.117 17 C 0.173 3.827 18 C -0.456 4.456 19 S 1.301 4.699 20 C -0.487 4.487 21 O -0.907 6.907 22 C -0.144 4.144 23 C -0.127 4.127 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.029 0.971 30 H 0.017 0.983 31 H 0.265 0.735 32 H 0.425 0.575 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -5.295 15.459 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.839 5.839 4 C 0.151 3.849 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.199 1.199 13 S 2.804 3.196 14 O -0.993 6.993 15 O -0.982 6.982 16 N -0.880 5.880 17 C 0.047 3.953 18 C -0.555 4.555 19 S 1.501 4.499 20 C -0.647 4.647 21 O -0.903 6.903 22 C -0.183 4.183 23 C -0.166 4.166 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.261 0.739 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.110 -4.718 15.987 17.168 hybrid contribution -1.780 -0.117 -0.806 1.958 sum -5.890 -4.835 15.181 16.986 Atomic orbital electron populations 1.22163 0.94743 1.03065 1.02133 1.21382 0.95625 0.81471 1.03304 1.57634 1.74935 1.20727 1.30609 1.18508 0.95988 0.88025 0.82335 1.21868 1.10981 1.22852 1.02508 0.93100 1.25658 0.98031 0.94825 1.00089 1.69992 1.34206 1.26498 1.25807 0.85672 0.79786 0.77855 0.79106 1.19437 1.20671 1.19886 1.01304 0.73303 0.72595 0.72417 1.93596 1.62280 1.62994 1.80435 1.93509 1.81192 1.52525 1.70951 1.55825 1.44864 1.21290 1.66016 1.20662 0.88816 0.93440 0.92423 1.29214 1.03702 1.07654 1.14886 1.70185 1.11427 0.84986 0.83323 1.27589 1.07771 1.18862 1.10433 1.92981 1.76562 1.63248 1.57469 1.23000 0.89451 1.02345 1.03488 1.22829 1.00167 0.90179 1.03400 0.91322 0.93863 0.89627 0.92199 0.88218 0.95266 0.96508 0.92598 0.73935 0.90121 0.87970 0.84385 0.86825 0.89666 0.86271 0.89262 0.88380 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.91 71.98 0.71 -3.15 16 2 C 0.11 3.22 6.58 86.38 0.57 3.79 16 3 N -1.00 -36.74 2.92 -519.84 -1.52 -38.26 16 4 C 0.28 12.97 4.99 85.63 0.43 13.39 16 5 C -0.54 -29.57 9.38 25.60 0.24 -29.33 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.01 0.72 5.46 84.66 0.46 1.19 16 8 N -0.92 -52.81 13.29 21.45 0.28 -52.53 16 9 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 S 2.80 94.59 6.07 -56.49 -0.34 94.25 16 14 O -1.01 -44.47 17.36 -128.00 -2.22 -46.69 16 15 O -1.00 -33.22 15.93 -128.00 -2.04 -35.26 16 16 N -1.12 -25.69 6.03 -187.48 -1.13 -26.82 16 17 C 0.17 3.05 6.17 86.38 0.53 3.58 16 18 C -0.46 -7.62 2.07 -10.79 -0.02 -7.64 16 19 S 1.30 22.10 13.82 -56.49 -0.78 21.32 16 20 C -0.49 -6.50 10.35 113.37 1.17 -5.32 16 21 O -0.91 -25.78 17.82 -148.98 -2.66 -28.44 16 22 C -0.14 -2.42 9.81 30.60 0.30 -2.12 16 23 C -0.13 -2.25 9.71 30.60 0.30 -1.95 16 24 H 0.07 1.36 5.95 -2.39 -0.01 1.34 16 25 H 0.04 1.23 7.13 -2.39 -0.02 1.21 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.10 2.57 6.69 -2.39 -0.02 2.55 16 29 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 30 H 0.02 0.85 7.79 -2.39 -0.02 0.83 16 31 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.42 8.54 8.47 -96.75 -0.82 7.72 16 33 H 0.08 1.34 5.75 -2.39 -0.01 1.32 16 34 H 0.10 1.47 6.48 -2.39 -0.02 1.46 16 35 H 0.14 1.39 7.32 -2.39 -0.02 1.38 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.12 1.65 8.08 -2.39 -0.02 1.63 16 39 H 0.09 1.70 8.06 -2.39 -0.02 1.68 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -77.02 362.13 -3.46 -80.48 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.22 Total: 13.70 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 4.69 Total: -27.56 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -2.36 Total: -117.61 kcal Atomic # 8 Polarization: -103.48 SS G_CDS: -6.92 Total: -110.39 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 116.69 SS G_CDS: -1.12 Total: 115.57 kcal Total: -77.02 -3.46 -80.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337200827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.510 kcal (2) G-P(sol) polarization free energy of solvation -77.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds