Wall clock time and date at job start Fri Apr 10 2020 18:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99917 * 2 1 4 4 O 1.20828 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99708 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46871 * 179.97438 * 5 3 2 7 7 C 1.36980 * 119.99918 * 269.99818 * 6 5 3 8 8 H 1.08002 * 120.00284 * 129.18200 * 7 6 5 9 9 C 1.38971 * 120.00094 * 309.18359 * 7 6 5 10 10 N 1.31414 * 120.00213 * 182.46053 * 9 7 6 11 11 Si 1.86805 * 120.00055 * 2.46592 * 9 7 6 12 12 H 1.48493 * 109.47439 * 94.13378 * 11 9 7 13 13 H 1.48504 * 109.46928 * 214.14033 * 11 9 7 14 14 H 1.48502 * 109.46740 * 334.13377 * 11 9 7 15 15 C 1.34781 * 120.00429 * 89.99663 * 6 5 3 16 16 O 1.21635 * 119.99225 * 0.68223 * 15 6 5 17 17 C 1.47316 * 120.00275 * 180.67954 * 15 6 5 18 18 C 1.41279 * 126.46054 * 352.63089 * 17 15 6 19 19 C 1.36441 * 107.01181 * 180.02562 * 18 17 15 20 20 C 1.46638 * 125.85658 * 180.02562 * 19 18 17 21 21 O 1.21599 * 119.99574 * 353.55749 * 20 19 18 22 22 O 1.34867 * 120.00111 * 173.55559 * 20 19 18 23 23 C 1.45199 * 117.00032 * 179.97438 * 22 20 19 24 24 N 1.37836 * 108.29260 * 359.97438 * 19 18 17 25 25 C 1.46506 * 125.39195 * 179.97438 * 24 19 18 26 26 C 1.34252 * 109.21588 * 0.24996 * 24 19 18 27 27 H 1.08996 * 109.47568 * 59.99856 * 1 2 3 28 28 H 1.09003 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47120 * 299.99670 * 1 2 3 30 30 H 1.08995 * 109.47386 * 60.00018 * 5 3 2 31 31 H 1.08999 * 109.47207 * 299.99828 * 5 3 2 32 32 H 0.96996 * 120.00168 * 185.00622 * 10 9 7 33 33 H 1.08001 * 126.49978 * 0.03539 * 18 17 15 34 34 H 1.08996 * 109.47279 * 300.00624 * 23 22 20 35 35 H 1.09007 * 109.47029 * 60.00322 * 23 22 20 36 36 H 1.08992 * 109.47278 * 179.97438 * 23 22 20 37 37 H 1.09001 * 109.46865 * 89.99845 * 25 24 19 38 38 H 1.09000 * 109.46809 * 330.00692 * 25 24 19 39 39 H 1.08995 * 109.46916 * 210.00475 * 25 24 19 40 40 H 1.08005 * 125.79899 * 179.73675 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1754 3.3362 -1.1876 8 1 3.7018 4.2914 -1.3599 9 6 4.9815 2.7731 -2.1697 10 7 5.2065 3.4248 -3.2885 11 14 5.7451 1.0898 -1.8996 12 1 4.8700 0.0480 -2.4945 13 1 7.0810 1.0427 -2.5465 14 1 5.8914 0.8407 -0.4430 15 6 4.1731 3.3264 1.1659 16 8 4.0131 2.7399 2.2194 17 6 4.5763 4.7433 1.1654 18 6 4.9394 5.5125 0.0374 19 6 5.2387 6.7651 0.4879 20 6 5.6663 7.8966 -0.3410 21 8 5.8937 7.7319 -1.5241 22 8 5.8074 9.1200 0.2089 23 6 6.2344 10.1931 -0.6712 24 7 5.0691 6.7849 1.8556 25 6 5.2898 7.9461 2.7213 26 6 4.6756 5.5700 2.2697 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8891 32 1 5.7084 3.0027 -4.0031 33 1 4.9735 5.1734 -0.9875 34 1 7.2080 9.9489 -1.0960 35 1 5.5077 10.3151 -1.4745 36 1 6.3074 11.1209 -0.1039 37 1 4.3637 8.5141 2.8102 38 1 6.0643 8.5796 2.2890 39 1 5.6054 7.6086 3.7084 40 1 4.4696 5.2868 3.2914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340563041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:35 Heat of formation + Delta-G solvation = -116.037712 kcal Electronic energy + Delta-G solvation = -28197.097354 eV Core-core repulsion = 23980.286231 eV Total energy + Delta-G solvation = -4216.811123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17749 -39.95963 -39.54902 -38.28124 -36.14564 -35.86979 -34.85410 -32.63915 -32.01325 -29.66865 -29.03032 -27.36826 -27.03048 -25.89156 -24.97358 -22.82690 -21.66958 -20.61827 -19.51156 -19.05080 -18.20315 -17.32174 -16.82875 -16.50648 -16.26504 -16.04296 -15.67660 -15.36038 -15.32713 -14.99385 -14.89329 -13.96882 -13.83405 -13.41144 -13.15333 -13.08827 -12.99956 -12.80579 -12.56353 -12.41522 -12.02731 -11.91111 -11.85692 -11.80386 -11.55320 -11.43348 -11.14958 -10.65828 -10.41043 -10.33767 -10.28426 -10.06431 -9.68424 -9.18243 -8.79102 -8.23803 -7.95514 -7.71096 -6.40649 -4.25760 1.69111 2.50077 2.84228 2.86104 3.03734 3.06836 3.16231 3.20271 3.23865 3.53402 4.07621 4.35286 4.44924 4.90830 4.96001 4.99441 5.12416 5.22132 5.27010 5.35826 5.37864 5.45572 5.46852 5.50631 5.61092 5.66502 5.80203 5.85231 5.96164 6.10291 6.38796 6.61674 6.79096 6.87025 7.21358 7.30516 7.48205 7.55366 8.01581 8.10110 8.23729 8.41961 8.91857 9.23398 9.58044 10.63804 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.004439 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.578601 B = 6305.685883 C = 7306.147517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.447 3.553 4 O -0.488 6.488 5 C 0.113 3.887 6 N -0.450 5.450 7 C -0.344 4.344 8 H 0.116 0.884 9 C 0.068 3.932 10 N -0.856 5.856 11 Si 0.870 3.130 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.255 1.255 15 C 0.578 3.422 16 O -0.597 6.597 17 C -0.205 4.205 18 C -0.026 4.026 19 C -0.086 4.086 20 C 0.535 3.465 21 O -0.489 6.489 22 O -0.370 6.370 23 C 0.037 3.963 24 N -0.423 5.423 25 C 0.070 3.930 26 C 0.088 3.912 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.278 0.722 33 H 0.204 0.796 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 5.828 8.136 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.287 3.713 4 O -0.373 6.373 5 C -0.011 4.011 6 N -0.171 5.171 7 C -0.471 4.471 8 H 0.133 0.867 9 C -0.141 4.141 10 N -0.490 5.490 11 Si 0.698 3.302 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.180 1.180 15 C 0.371 3.629 16 O -0.482 6.482 17 C -0.215 4.215 18 C -0.051 4.051 19 C -0.191 4.191 20 C 0.381 3.619 21 O -0.375 6.375 22 O -0.288 6.288 23 C -0.056 4.056 24 N -0.099 5.099 25 C -0.071 4.071 26 C -0.053 4.053 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.221 0.779 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.116 6.228 8.233 10.324 hybrid contribution 0.058 -0.640 -0.349 0.732 sum -0.058 5.588 7.883 9.663 Atomic orbital electron populations 1.23127 0.77654 1.02783 1.02229 1.86531 1.22597 1.34632 1.84951 1.24880 0.92958 0.81173 0.72269 1.90618 1.66594 1.36237 1.43856 1.21440 0.86321 0.89153 1.04223 1.43133 1.59388 1.08052 1.06509 1.19254 1.28755 1.07118 0.91982 0.86703 1.25502 0.94513 0.98334 0.95741 1.69633 1.37808 1.36558 1.04981 0.87020 0.79494 0.83900 0.79798 1.19579 1.20947 1.17974 1.17386 0.77286 0.85465 0.82788 1.90624 1.57145 1.68776 1.31661 1.19399 1.14463 0.94832 0.92773 1.23017 0.91585 0.87964 1.02535 1.19242 1.22501 0.95307 0.82098 1.19912 0.74670 0.81237 0.86125 1.90954 1.46775 1.84121 1.15680 1.86579 1.80382 1.18713 1.43162 1.23186 1.00463 0.87494 0.94495 1.43689 1.50024 1.09864 1.06300 1.22201 1.03554 0.87132 0.94239 1.22255 1.00097 0.83360 0.99585 0.92222 0.88780 0.92365 0.88631 0.86856 0.91160 0.77938 0.91964 0.91886 0.88524 0.90667 0.88716 0.89854 0.80436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.84 10.57 -39.27 -0.41 -7.26 16 3 C 0.45 9.82 8.02 36.01 0.29 10.11 16 4 O -0.49 -12.01 16.18 -18.75 -0.30 -12.31 16 5 C 0.11 2.53 4.23 -5.19 -0.02 2.51 16 6 N -0.45 -11.09 1.61 -117.35 -0.19 -11.28 16 7 C -0.34 -8.97 6.87 -14.98 -0.10 -9.07 16 8 H 0.12 3.23 6.05 -52.49 -0.32 2.92 16 9 C 0.07 1.76 5.50 -17.46 -0.10 1.66 16 10 N -0.86 -23.38 13.95 55.50 0.77 -22.61 16 11 Si 0.87 19.63 24.73 -169.99 -4.20 15.42 16 12 H -0.27 -5.80 7.07 56.52 0.40 -5.40 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.26 -5.60 6.32 56.52 0.36 -5.24 16 15 C 0.58 14.03 7.63 -12.57 -0.10 13.94 16 16 O -0.60 -14.90 16.49 5.25 0.09 -14.82 16 17 C -0.21 -4.47 6.02 -105.03 -0.63 -5.10 16 18 C -0.03 -0.59 8.69 -39.07 -0.34 -0.93 16 19 C -0.09 -1.65 6.82 -82.42 -0.56 -2.21 16 20 C 0.54 9.81 7.89 34.12 0.27 10.08 16 21 O -0.49 -10.56 16.66 -19.34 -0.32 -10.88 16 22 O -0.37 -5.20 8.01 -40.95 -0.33 -5.53 16 23 C 0.04 0.40 10.57 101.05 1.07 1.47 16 24 N -0.42 -6.66 3.13 -120.12 -0.38 -7.03 16 25 C 0.07 0.72 10.43 59.85 0.62 1.35 16 26 C 0.09 1.53 11.18 -16.47 -0.18 1.34 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 30 H 0.10 2.09 3.28 -51.93 -0.17 1.92 16 31 H 0.11 2.36 7.41 -51.93 -0.38 1.98 16 32 H 0.28 7.11 8.32 -40.82 -0.34 6.77 16 33 H 0.20 5.15 4.91 -52.49 -0.26 4.89 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.95 6.26 -51.93 -0.33 0.62 16 39 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.18 2.56 8.06 -52.48 -0.42 2.14 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -33.92 345.62 -3.23 -37.15 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.44 Total: 7.21 kcal Atomic # 6 Polarization: 25.45 SS G_CDS: 1.28 Total: 26.74 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.21 Total: -40.93 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.28 Total: -50.80 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.20 Total: 15.42 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.92 -3.23 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340563041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.890 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds