Wall clock time and date at job start Fri Apr 10 2020 18:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99917 * 2 1 4 4 O 1.20828 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99708 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46871 * 179.97438 * 5 3 2 7 7 C 1.36980 * 119.99918 * 269.99818 * 6 5 3 8 8 H 1.08002 * 120.00284 * 129.18200 * 7 6 5 9 9 C 1.38971 * 120.00094 * 309.18359 * 7 6 5 10 10 N 1.31414 * 120.00213 * 182.46053 * 9 7 6 11 11 Si 1.86805 * 120.00055 * 2.46592 * 9 7 6 12 12 H 1.48493 * 109.47439 * 94.13378 * 11 9 7 13 13 H 1.48504 * 109.46928 * 214.14033 * 11 9 7 14 14 H 1.48502 * 109.46740 * 334.13377 * 11 9 7 15 15 C 1.34781 * 120.00429 * 89.99663 * 6 5 3 16 16 O 1.21635 * 119.99225 * 0.68223 * 15 6 5 17 17 C 1.47316 * 120.00275 * 180.67954 * 15 6 5 18 18 C 1.41279 * 126.46054 * 352.63089 * 17 15 6 19 19 C 1.36441 * 107.01181 * 180.02562 * 18 17 15 20 20 C 1.46638 * 125.85658 * 180.02562 * 19 18 17 21 21 O 1.21599 * 119.99574 * 353.55749 * 20 19 18 22 22 O 1.34867 * 120.00111 * 173.55559 * 20 19 18 23 23 C 1.45199 * 117.00032 * 179.97438 * 22 20 19 24 24 N 1.37836 * 108.29260 * 359.97438 * 19 18 17 25 25 C 1.46506 * 125.39195 * 179.97438 * 24 19 18 26 26 C 1.34252 * 109.21588 * 0.24996 * 24 19 18 27 27 H 1.08996 * 109.47568 * 59.99856 * 1 2 3 28 28 H 1.09003 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47120 * 299.99670 * 1 2 3 30 30 H 1.08995 * 109.47386 * 60.00018 * 5 3 2 31 31 H 1.08999 * 109.47207 * 299.99828 * 5 3 2 32 32 H 0.96996 * 120.00168 * 185.00622 * 10 9 7 33 33 H 1.08001 * 126.49978 * 0.03539 * 18 17 15 34 34 H 1.08996 * 109.47279 * 300.00624 * 23 22 20 35 35 H 1.09007 * 109.47029 * 60.00322 * 23 22 20 36 36 H 1.08992 * 109.47278 * 179.97438 * 23 22 20 37 37 H 1.09001 * 109.46865 * 89.99845 * 25 24 19 38 38 H 1.09000 * 109.46809 * 330.00692 * 25 24 19 39 39 H 1.08995 * 109.46916 * 210.00475 * 25 24 19 40 40 H 1.08005 * 125.79899 * 179.73675 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1754 3.3362 -1.1876 8 1 3.7018 4.2914 -1.3599 9 6 4.9815 2.7731 -2.1697 10 7 5.2065 3.4248 -3.2885 11 14 5.7451 1.0898 -1.8996 12 1 4.8700 0.0480 -2.4945 13 1 7.0810 1.0427 -2.5465 14 1 5.8914 0.8407 -0.4430 15 6 4.1731 3.3264 1.1659 16 8 4.0131 2.7399 2.2194 17 6 4.5763 4.7433 1.1654 18 6 4.9394 5.5125 0.0374 19 6 5.2387 6.7651 0.4879 20 6 5.6663 7.8966 -0.3410 21 8 5.8937 7.7319 -1.5241 22 8 5.8074 9.1200 0.2089 23 6 6.2344 10.1931 -0.6712 24 7 5.0691 6.7849 1.8556 25 6 5.2898 7.9461 2.7213 26 6 4.6756 5.5700 2.2697 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8891 32 1 5.7084 3.0027 -4.0031 33 1 4.9735 5.1734 -0.9875 34 1 7.2080 9.9489 -1.0960 35 1 5.5077 10.3151 -1.4745 36 1 6.3074 11.1209 -0.1039 37 1 4.3637 8.5141 2.8102 38 1 6.0643 8.5796 2.2890 39 1 5.6054 7.6086 3.7084 40 1 4.4696 5.2868 3.2914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340563041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:34 Heat of formation + Delta-G solvation = -138.970574 kcal Electronic energy + Delta-G solvation = -28198.091797 eV Core-core repulsion = 23980.286231 eV Total energy + Delta-G solvation = -4217.805566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64070 -41.63090 -40.95735 -40.01282 -37.54207 -37.51124 -36.73284 -34.07982 -33.89951 -31.13333 -30.60333 -28.47172 -28.26427 -27.31549 -26.78335 -24.25804 -23.22488 -22.25032 -20.95338 -20.76592 -19.87814 -19.00687 -18.38520 -17.94708 -17.62712 -17.53607 -17.33420 -17.01451 -16.91132 -16.37658 -16.21088 -15.59326 -15.49579 -14.84638 -14.72032 -14.59939 -14.35638 -14.29747 -14.13382 -13.73850 -13.57826 -13.38879 -13.10723 -13.05202 -12.99436 -12.92247 -12.81724 -12.16108 -11.89422 -11.83226 -11.82219 -11.79602 -11.45791 -11.08145 -10.70832 -9.79017 -9.69969 -9.33016 -8.39650 -6.28973 0.23464 0.86151 1.12771 1.24256 1.35902 1.43934 1.54308 1.62769 1.84550 2.01655 2.19296 2.61398 2.65037 3.01558 3.73497 3.85836 3.94799 4.00174 4.09402 4.16304 4.31907 4.33034 4.33221 4.34281 4.39245 4.51109 4.58291 4.66525 4.69266 4.80819 4.98723 5.14984 5.23423 5.28047 5.42050 5.67858 5.86322 6.08650 6.15581 6.19649 6.70011 6.74600 6.94498 7.29055 7.67227 8.68112 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.004439 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.578601 B = 6305.685883 C = 7306.147517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.451 3.549 4 O -0.524 6.524 5 C 0.106 3.894 6 N -0.462 5.462 7 C -0.333 4.333 8 H 0.079 0.921 9 C 0.024 3.976 10 N -0.899 5.899 11 Si 0.921 3.079 12 H -0.247 1.247 13 H -0.284 1.284 14 H -0.245 1.245 15 C 0.571 3.429 16 O -0.609 6.609 17 C -0.251 4.251 18 C -0.057 4.057 19 C -0.089 4.089 20 C 0.542 3.458 21 O -0.533 6.533 22 O -0.352 6.352 23 C 0.029 3.971 24 N -0.403 5.403 25 C 0.059 3.941 26 C 0.120 3.880 27 H 0.056 0.944 28 H 0.141 0.859 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.280 0.720 33 H 0.161 0.839 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 6.029 10.925 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.412 6.412 5 C -0.019 4.019 6 N -0.183 5.183 7 C -0.461 4.461 8 H 0.096 0.904 9 C -0.180 4.180 10 N -0.535 5.535 11 Si 0.745 3.255 12 H -0.173 1.173 13 H -0.211 1.211 14 H -0.168 1.168 15 C 0.365 3.635 16 O -0.496 6.496 17 C -0.260 4.260 18 C -0.082 4.082 19 C -0.196 4.196 20 C 0.389 3.611 21 O -0.423 6.423 22 O -0.269 6.269 23 C -0.064 4.064 24 N -0.076 5.076 25 C -0.080 4.080 26 C -0.024 4.024 27 H 0.075 0.925 28 H 0.159 0.841 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.163 0.837 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.039 6.452 11.052 12.797 hybrid contribution -0.049 -0.535 -1.122 1.244 sum -0.088 5.917 9.930 11.559 Atomic orbital electron populations 1.23560 0.74915 1.05872 1.02207 1.86495 1.25118 1.32328 1.84080 1.24698 0.92885 0.81627 0.71520 1.90604 1.67275 1.37592 1.45688 1.21533 0.87147 0.87974 1.05200 1.43177 1.60124 1.08943 1.06075 1.18884 1.28322 1.06192 0.92672 0.90403 1.26127 0.94727 1.01902 0.95247 1.69752 1.39342 1.38331 1.06089 0.86214 0.78817 0.80119 0.80366 1.17257 1.21050 1.16840 1.17816 0.76725 0.86477 0.82492 1.90580 1.57995 1.69371 1.31649 1.19459 1.17591 0.94530 0.94374 1.22509 0.94326 0.90191 1.01207 1.19093 1.22012 0.94583 0.83942 1.19827 0.73706 0.82360 0.85255 1.90936 1.48788 1.85010 1.17541 1.86564 1.79638 1.17610 1.43124 1.23608 1.00022 0.87714 0.95071 1.43988 1.47326 1.10900 1.05358 1.22702 1.05032 0.85426 0.94806 1.22659 0.97245 0.82757 0.99753 0.92537 0.84096 0.92226 0.88090 0.85228 0.91000 0.82177 0.92152 0.92490 0.83699 0.88561 0.88105 0.86067 0.76636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.91 10.57 -51.45 -0.54 -13.45 16 3 C 0.45 19.78 8.02 71.24 0.57 20.35 16 4 O -0.52 -26.27 16.18 21.96 0.36 -25.92 16 5 C 0.11 4.72 4.23 85.63 0.36 5.08 16 6 N -0.46 -23.47 1.61 -643.42 -1.04 -24.51 16 7 C -0.33 -18.43 6.87 84.06 0.58 -17.85 16 8 H 0.08 4.83 6.05 -2.91 -0.02 4.81 16 9 C 0.02 1.32 5.50 84.93 0.47 1.79 16 10 N -0.90 -52.07 13.95 21.67 0.30 -51.77 16 11 Si 0.92 40.86 24.73 68.60 1.70 42.56 16 12 H -0.25 -10.06 7.07 99.48 0.70 -9.35 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.24 -10.35 6.32 99.48 0.63 -9.72 16 15 C 0.57 28.26 7.63 86.63 0.66 28.92 16 16 O -0.61 -30.25 16.49 -4.14 -0.07 -30.32 16 17 C -0.25 -11.15 6.02 -20.13 -0.12 -11.28 16 18 C -0.06 -2.69 8.69 22.60 0.20 -2.50 16 19 C -0.09 -3.46 6.82 39.97 0.27 -3.19 16 20 C 0.54 20.12 7.89 70.01 0.55 20.67 16 21 O -0.53 -24.21 16.66 19.51 0.33 -23.89 16 22 O -0.35 -9.27 8.01 -57.81 -0.46 -9.73 16 23 C 0.03 0.55 10.57 113.37 1.20 1.75 16 24 N -0.40 -11.78 3.13 -533.94 -1.67 -13.45 16 25 C 0.06 0.96 10.43 127.77 1.33 2.29 16 26 C 0.12 3.93 11.18 84.34 0.94 4.88 16 27 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 28 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 30 H 0.10 4.34 3.28 -2.39 -0.01 4.34 16 31 H 0.13 5.29 7.41 -2.39 -0.02 5.27 16 32 H 0.28 15.09 8.32 -92.71 -0.77 14.32 16 33 H 0.16 8.99 4.91 -2.91 -0.01 8.97 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.15 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.60 6.26 -2.39 -0.01 1.58 16 39 H 0.12 1.17 8.13 -2.39 -0.02 1.15 16 40 H 0.22 5.36 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -80.37 345.62 8.13 -72.24 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.02 Total: 25.38 kcal Atomic # 6 Polarization: 44.64 SS G_CDS: 8.21 Total: 52.85 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -2.40 Total: -89.73 kcal Atomic # 8 Polarization: -102.91 SS G_CDS: -0.39 Total: -103.30 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.70 Total: 42.56 kcal Total: -80.37 8.13 -72.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340563041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.726 kcal (2) G-P(sol) polarization free energy of solvation -80.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds